{"pairs":[{"id":"1ARJ_ARG_N_B_1_pocket","title":"1ARJ (ARG) vs 8THV (apo)","struct_title":"ARG-BOUND TAR RNA, NMR","holo_pdb":"1ARJ","ligand":"ARG","holo_chain":"N","holo_rna_chain":"N","lig_auth_chain":"N","nearest_rna_chain":"N","lig_resseq":"1","apo_pdb":"8THV","apo_chain":"A","holo_len":29,"apo_len":29,"pocket_size":17,"thumb":{"holo":[[0.89,0.744],[0.779,0.663],[0.704,0.606],[0.655,0.514],[0.633,0.395],[0.581,0.254],[0.407,0.159],[0.482,0.0],[0.557,0.039],[0.453,0.096],[0.366,0.145],[0.296,0.247],[0.218,0.362],[0.119,0.461],[0.059,0.647],[0.079,0.693],[0.07,0.509],[0.224,0.538],[0.357,0.649],[0.309,0.568],[0.398,0.508],[0.451,0.403],[0.49,0.256],[0.59,0.187],[0.684,0.204],[0.78,0.273],[0.867,0.383],[0.932,0.461],[0.844,0.488]],"apo":[[0.921,0.571],[0.868,0.624],[0.8,0.605],[0.721,0.528],[0.633,0.419],[0.532,0.35],[0.374,0.363],[0.552,0.205],[0.52,0.098],[0.445,0.102],[0.368,0.17],[0.289,0.28],[0.208,0.398],[0.051,0.454],[0.201,0.58],[0.162,0.503],[0.0,0.428],[0.139,0.446],[0.303,0.469],[0.259,0.519],[0.334,0.518],[0.412,0.449],[0.49,0.335],[0.563,0.221],[0.646,0.21],[0.737,0.249],[0.83,0.343],[0.916,0.461],[1.0,0.555]]},"method":"NMR","resolution":null,"rna_type":"HIV TAR","rna_group":"Transcription regulation","num_chains":1,"total_rna_len":29,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["hairpin loop","bulge","stem"],"rmsd":5.06,"host_chain_rmsd":5.06,"pocket_rmsd":4.23,"lig_bsa":260.1,"ligand_burial":0.8,"tm_score":0.181,"rg_apo":13.08,"rg_holo":13.18,"rg_delta":0.1,"bp_rewire_src":"dssr","bp_formed":1,"bp_broken":4,"bp_conserved":9,"bp_formed_wc":0,"bp_broken_wc":2,"bp_conserved_wc":9,"maxd":10.7,"water":0,"hbonds":4,"mw":176.2,"logp":-3.87,"thumb_img":true,"thumb_v":1785389617,"apo_alts":[{"pdb":"1ANR","rmsd":6.11,"host_chain_rmsd":6.11,"apo_chain":"A","apo_len":29,"identity":100,"global_identity":100,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.138,"rg_delta":-1.12,"pocket_rmsd":5.62,"maxd":11.7,"bp_formed":1,"bp_broken":3,"bp_conserved":9},{"pdb":"7JU1","rmsd":4.56,"host_chain_rmsd":4.56,"apo_chain":"X","apo_len":29,"identity":100,"global_identity":100,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.236,"rg_delta":-0.55,"pocket_rmsd":4.29,"maxd":11.1,"bp_formed":1,"bp_broken":3,"bp_conserved":9},{"pdb":"8U3M","rmsd":5.75,"host_chain_rmsd":5.75,"apo_chain":"A","apo_len":31,"identity":94,"global_identity":94,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.195,"rg_delta":-0.4,"pocket_rmsd":5.09,"maxd":11.2,"bp_formed":5,"bp_broken":9,"bp_conserved":5}],"n_apo_copies":0},{"id":"1EHT_TEP_A_B_34_pocket","title":"1EHT (TEP) vs 9JA9 (apo)","struct_title":"THEOPHYLLINE-BINDING RNA IN COMPLEX WITH THEOPHYLLINE, NMR, 10 STRUCTURES","holo_pdb":"1EHT","ligand":"TEP","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"34","apo_pdb":"9JA9","apo_chain":"A","holo_len":33,"apo_len":33,"pocket_size":13,"thumb":{"holo":[[0.048,0.419],[0.128,0.418],[0.185,0.449],[0.229,0.422],[0.289,0.365],[0.328,0.278],[0.488,0.205],[0.445,0.086],[0.513,0.039],[0.593,0.041],[0.653,0.105],[0.71,0.193],[0.765,0.296],[0.865,0.362],[1.0,0.394],[0.945,0.405],[0.857,0.44],[0.758,0.413],[0.676,0.382],[0.612,0.324],[0.553,0.224],[0.386,0.255],[0.339,0.181],[0.402,0.126],[0.532,0.066],[0.402,0.0],[0.298,0.042],[0.3,0.08],[0.209,0.113],[0.164,0.22],[0.106,0.346],[0.04,0.391],[0.0,0.46]],"apo":[[0.044,0.275],[0.105,0.38],[0.186,0.432],[0.255,0.421],[0.315,0.387],[0.355,0.301],[0.412,0.18],[0.472,0.098],[0.53,0.036],[0.583,0.052],[0.631,0.134],[0.683,0.235],[0.76,0.326],[0.852,0.351],[0.996,0.343],[0.937,0.359],[0.859,0.418],[0.775,0.399],[0.695,0.4],[0.623,0.353],[0.544,0.275],[0.393,0.241],[0.304,0.159],[0.324,0.144],[0.484,0.081],[0.434,0.022],[0.356,0.042],[0.277,0.071],[0.228,0.146],[0.192,0.266],[0.153,0.383],[0.094,0.449],[0.021,0.439]]},"method":"NMR","resolution":null,"rna_type":"Aptamer","rna_group":"Aptamer","num_chains":1,"total_rna_len":33,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":97,"pocket_motifs":["internal loop","stem"],"rmsd":3.32,"host_chain_rmsd":3.32,"pocket_rmsd":4.01,"lig_bsa":289.3,"ligand_burial":0.89,"tm_score":0.212,"rg_apo":14.78,"rg_holo":14.98,"rg_delta":0.2,"bp_rewire_src":"dssr","bp_formed":6,"bp_broken":4,"bp_conserved":14,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":9,"maxd":8.5,"water":0,"hbonds":3,"mw":180.2,"logp":-1.04,"thumb_img":true,"thumb_v":1785451614,"apo_alts":[{"pdb":"9JA7","rmsd":3.32,"host_chain_rmsd":3.32,"apo_chain":"A","apo_len":33,"identity":100,"global_identity":97,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.237,"rg_delta":0.19,"pocket_rmsd":4.01,"maxd":8.5,"bp_formed":6,"bp_broken":4,"bp_conserved":14}],"n_apo_copies":0},{"id":"1EI2_NMY_A_B_26_pocket","title":"1EI2 (NMY) vs 1QC8 (apo)","struct_title":"STRUCTURAL BASIS FOR RECOGNITION OF THE RNA MAJOR GROOVE IN THE TAU EXON 10 SPLICING REGULATORY ELEMENT BY AMINOGLYCOSIDE ANTIBIOTICS","holo_pdb":"1EI2","ligand":"NMY","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"26","apo_pdb":"1QC8","apo_chain":"A","holo_len":25,"apo_len":25,"pocket_size":18,"thumb":{"holo":[[0.097,0.256],[0.158,0.383],[0.25,0.396],[0.355,0.399],[0.416,0.342],[0.484,0.231],[0.567,0.112],[0.673,0.072],[0.769,0.033],[0.849,0.094],[0.887,0.21],[0.916,0.248],[0.835,0.352],[0.764,0.445],[0.785,0.592],[0.77,0.414],[0.728,0.297],[0.681,0.166],[0.611,0.063],[0.534,0.0],[0.435,0.01],[0.336,0.095],[0.227,0.186],[0.121,0.243],[0.006,0.227]],"apo":[[0.057,0.176],[0.013,0.301],[0.128,0.37],[0.245,0.376],[0.354,0.382],[0.437,0.302],[0.503,0.194],[0.603,0.123],[0.711,0.051],[0.837,0.069],[0.93,0.159],[1.0,0.272],[0.921,0.304],[0.845,0.367],[0.822,0.534],[0.865,0.403],[0.816,0.3],[0.751,0.183],[0.653,0.091],[0.546,0.047],[0.448,0.06],[0.362,0.123],[0.264,0.213],[0.145,0.25],[0.0,0.216]]},"method":"NMR","resolution":null,"rna_type":"Alternative splicing element","rna_group":"Post-transcriptional","num_chains":1,"total_rna_len":25,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["hairpin loop","bulge","stem"],"rmsd":4.29,"host_chain_rmsd":4.29,"pocket_rmsd":4.0,"lig_bsa":469.6,"ligand_burial":0.661,"tm_score":0.242,"rg_apo":14.15,"rg_holo":13.35,"rg_delta":-0.8,"bp_rewire_src":"dssr","bp_formed":1,"bp_broken":3,"bp_conserved":7,"bp_formed_wc":0,"bp_broken_wc":1,"bp_conserved_wc":7,"maxd":7.4,"water":0,"hbonds":6,"mw":614.7,"logp":-8.9,"thumb_img":true,"thumb_v":1785389617,"apo_alts":[],"n_apo_copies":0},{"id":"1FYP_PAR_A_B_28_pocket","title":"1FYP (PAR) vs 1FYO (apo)","struct_title":"EUKARYOTIC DECODING REGION A-SITE RNA-PAROMOMYCIN COMPLEX","holo_pdb":"1FYP","ligand":"PAR","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"28","apo_pdb":"1FYO","apo_chain":"A","holo_len":27,"apo_len":27,"pocket_size":20,"thumb":{"holo":[[0.799,0.333],[0.757,0.217],[0.704,0.125],[0.656,0.071],[0.611,0.088],[0.572,0.153],[0.505,0.227],[0.445,0.342],[0.358,0.385],[0.28,0.355],[0.211,0.277],[0.158,0.183],[0.088,0.057],[0.145,0.133],[0.19,0.0],[0.282,0.055],[0.333,0.126],[0.36,0.232],[0.422,0.337],[0.524,0.415],[0.601,0.418],[0.638,0.376],[0.703,0.302],[0.726,0.202],[0.762,0.074],[0.823,0.051],[0.879,0.105]],"apo":[[0.886,0.313],[0.846,0.192],[0.793,0.103],[0.748,0.054],[0.697,0.083],[0.632,0.141],[0.544,0.208],[0.447,0.316],[0.344,0.364],[0.247,0.359],[0.168,0.304],[0.103,0.209],[0.0,0.099],[0.064,0.129],[0.079,0.006],[0.176,0.072],[0.233,0.146],[0.289,0.246],[0.355,0.333],[0.479,0.417],[0.563,0.384],[0.624,0.352],[0.686,0.266],[0.763,0.187],[0.84,0.095],[0.927,0.068],[1.0,0.191]]},"method":"NMR","resolution":null,"rna_type":"Ribosomal RNA","rna_group":"Protein synthesis","num_chains":1,"total_rna_len":27,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["internal loop","hairpin loop","stem"],"rmsd":3.73,"host_chain_rmsd":3.73,"pocket_rmsd":3.29,"lig_bsa":634.6,"ligand_burial":0.825,"tm_score":0.26,"rg_apo":14.71,"rg_holo":12.48,"rg_delta":-2.23,"bp_rewire_src":"dssr","bp_formed":1,"bp_broken":1,"bp_conserved":13,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":9,"maxd":8.1,"water":0,"hbonds":12,"mw":615.6,"logp":-8.86,"thumb_img":true,"thumb_v":1785389617,"apo_alts":[],"n_apo_copies":0},{"id":"1I9V_NMY_A_B_200_pocket","title":"1I9V (NMY) vs 1ZO3 (apo)","struct_title":"CRYSTAL STRUCTURE ANALYSIS OF A TRNA-NEOMYCIN COMPLEX","holo_pdb":"1I9V","ligand":"NMY","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"200","apo_pdb":"1ZO3","apo_chain":"B","holo_len":76,"apo_len":76,"pocket_size":14,"thumb":{"holo":[[0.896,0.256],[0.874,0.282],[0.826,0.307],[0.76,0.315],[0.698,0.318],[0.652,0.328],[0.621,0.367],[0.536,0.426],[0.446,0.404],[0.422,0.331],[0.446,0.291],[0.467,0.298],[0.497,0.348],[0.498,0.411],[0.524,0.47],[0.588,0.504],[0.578,0.607],[0.617,0.608],[0.543,0.645],[0.458,0.588],[0.48,0.517],[0.444,0.47],[0.415,0.411],[0.39,0.351],[0.371,0.312],[0.349,0.315],[0.316,0.349],[0.259,0.389],[0.202,0.416],[0.157,0.432],[0.117,0.413],[0.088,0.358],[0.06,0.295],[0.0,0.246],[0.066,0.232],[0.121,0.231],[0.164,0.23],[0.175,0.279],[0.184,0.332],[0.174,0.408],[0.188,0.457],[0.222,0.48],[0.269,0.471],[0.324,0.448],[0.385,0.426],[0.476,0.461],[0.568,0.453],[0.558,0.466],[0.633,0.399],[0.672,0.439],[0.719,0.492],[0.747,0.542],[0.757,0.586],[0.742,0.623],[0.685,0.659],[0.628,0.73],[0.605,0.668],[0.629,0.578],[0.583,0.497],[0.624,0.525],[0.709,0.558],[0.767,0.542],[0.8,0.508],[0.796,0.463],[0.766,0.411],[0.714,0.36],[0.675,0.313],[0.658,0.272],[0.679,0.248],[0.718,0.225],[0.776,0.215],[0.845,0.211],[0.889,0.194],[0.897,0.154],[0.887,0.087],[1.0,0.052]],"apo":[[0.886,0.256],[0.868,0.281],[0.821,0.301],[0.758,0.312],[0.693,0.32],[0.649,0.335],[0.626,0.367],[0.533,0.431],[0.451,0.411],[0.433,0.323],[0.449,0.293],[0.468,0.302],[0.496,0.356],[0.495,0.418],[0.519,0.472],[0.603,0.532],[0.574,0.617],[0.613,0.616],[0.544,0.648],[0.456,0.589],[0.476,0.518],[0.441,0.473],[0.41,0.415],[0.384,0.352],[0.369,0.311],[0.35,0.311],[0.316,0.337],[0.262,0.375],[0.209,0.405],[0.163,0.421],[0.126,0.407],[0.093,0.355],[0.063,0.297],[0.008,0.256],[0.063,0.249],[0.119,0.227],[0.165,0.23],[0.189,0.264],[0.191,0.327],[0.192,0.392],[0.207,0.439],[0.237,0.464],[0.281,0.464],[0.332,0.446],[0.385,0.423],[0.487,0.461],[0.564,0.475],[0.553,0.466],[0.635,0.405],[0.672,0.443],[0.717,0.496],[0.748,0.546],[0.755,0.587],[0.734,0.626],[0.682,0.672],[0.629,0.729],[0.605,0.672],[0.626,0.586],[0.58,0.505],[0.614,0.533],[0.7,0.561],[0.764,0.547],[0.795,0.512],[0.795,0.467],[0.763,0.416],[0.718,0.363],[0.678,0.317],[0.658,0.276],[0.677,0.246],[0.719,0.226],[0.78,0.212],[0.838,0.202],[0.884,0.188],[0.898,0.145],[0.892,0.083],[0.947,0.0]]},"method":"X-ray","resolution":2.6,"rna_type":"Transfer RNA","rna_group":"Protein synthesis","num_chains":1,"total_rna_len":74,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["junction","hairpin loop","stem"],"rmsd":1.29,"host_chain_rmsd":1.29,"pocket_rmsd":0.8,"lig_bsa":274.6,"ligand_burial":0.34,"tm_score":0.884,"rg_apo":23.05,"rg_holo":23.25,"rg_delta":0.2,"bp_rewire_src":"dssr","bp_formed":1,"bp_broken":6,"bp_conserved":30,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":21,"maxd":6.7,"water":0,"hbonds":3,"mw":614.7,"logp":-8.9,"thumb_img":true,"thumb_v":1785444644,"apo_alts":[],"n_apo_copies":2},{"id":"1J7T_PAR_A_C_45_pocket","title":"1J7T (PAR) vs 3BNL (apo)","struct_title":"Complex between Paromomycin and the 16S-rRNA A-site at 2.5 A resolution","holo_pdb":"1J7T","ligand":"PAR","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"45","apo_pdb":"3BNL","apo_chain":"B","holo_len":21,"apo_len":22,"pocket_size":17,"thumb":{"holo":[[0.062,0.168],[0.122,0.235],[0.196,0.266],[0.263,0.257],[0.31,0.178],[0.352,0.1],[0.4,0.03],[0.455,0.0],[0.498,0.023],[0.528,0.073],[0.563,0.154],[0.602,0.239],[0.647,0.299],[0.695,0.329],[0.845,0.394],[0.872,0.35],[0.821,0.208],[0.847,0.11],[0.88,0.038],[0.923,0.004],[0.987,0.024]],"apo":[[0.0,0.052],[0.052,0.128],[0.114,0.203],[0.174,0.249],[0.235,0.242],[0.299,0.21],[0.355,0.141],[0.398,0.075],[0.434,0.04],[0.475,0.036],[0.511,0.082],[0.557,0.159],[0.608,0.236],[0.664,0.283],[0.732,0.298],[0.879,0.377],[0.844,0.294],[0.843,0.2],[0.853,0.093],[0.894,0.037],[0.946,0.033],[1.0,0.064]]},"method":"X-ray","resolution":2.5,"rna_type":"Ribosomal RNA","rna_group":"Protein synthesis","num_chains":2,"total_rna_len":42,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":95,"pocket_motifs":["internal loop","stem"],"rmsd":2.53,"host_chain_rmsd":2.12,"pocket_rmsd":2.4,"lig_bsa":481.3,"ligand_burial":0.63,"tm_score":0.273,"rg_apo":18.21,"rg_holo":18.0,"rg_delta":-0.21,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":2,"bp_conserved":18,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":16,"maxd":5.2,"water":2,"hbonds":9,"mw":615.6,"logp":-8.86,"thumb_img":true,"thumb_v":1785389617,"apo_alts":[],"n_apo_copies":0},{"id":"1J7T_PAR_B_D_46_pocket","title":"1J7T (PAR) vs 3BNL (apo)","struct_title":"Complex between Paromomycin and the 16S-rRNA A-site at 2.5 A resolution","holo_pdb":"1J7T","ligand":"PAR","holo_chain":"B","holo_rna_chain":"B","lig_auth_chain":"B","nearest_rna_chain":"A","lig_resseq":"46","apo_pdb":"3BNL","apo_chain":"A","holo_len":21,"apo_len":22,"pocket_size":17,"thumb":{"holo":[[0.054,0.165],[0.12,0.244],[0.191,0.282],[0.267,0.298],[0.319,0.244],[0.362,0.161],[0.401,0.076],[0.442,0.02],[0.481,0.0],[0.519,0.029],[0.56,0.097],[0.588,0.186],[0.626,0.272],[0.676,0.327],[0.795,0.421],[0.851,0.391],[0.83,0.27],[0.857,0.169],[0.894,0.085],[0.937,0.033],[0.99,0.03]],"apo":[[0.0,0.061],[0.05,0.124],[0.109,0.193],[0.171,0.256],[0.234,0.275],[0.3,0.261],[0.355,0.203],[0.398,0.127],[0.436,0.071],[0.476,0.04],[0.507,0.061],[0.553,0.122],[0.603,0.199],[0.66,0.262],[0.726,0.301],[0.803,0.367],[0.843,0.341],[0.844,0.257],[0.853,0.15],[0.895,0.083],[0.946,0.048],[1.0,0.059]]},"method":"X-ray","resolution":2.5,"rna_type":"Ribosomal RNA","rna_group":"Protein synthesis","num_chains":2,"total_rna_len":42,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":95,"pocket_motifs":["internal loop","stem"],"rmsd":2.54,"host_chain_rmsd":2.32,"pocket_rmsd":2.29,"lig_bsa":468.8,"ligand_burial":0.617,"tm_score":0.324,"rg_apo":17.97,"rg_holo":17.98,"rg_delta":0.01,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":2,"bp_conserved":18,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":16,"maxd":4.7,"water":7,"hbonds":8,"mw":615.6,"logp":-8.86,"thumb_img":true,"thumb_v":1785488729,"apo_alts":[],"n_apo_copies":0},{"id":"1LC4_TOY_A_C_47_pocket","title":"1LC4 (TOY) vs 3BNL (apo)","struct_title":"Crystal Structure of Tobramycin Bound to the Eubacterial 16S rRNA A Site","holo_pdb":"1LC4","ligand":"TOY","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"47","apo_pdb":"3BNL","apo_chain":"A","holo_len":21,"apo_len":22,"pocket_size":17,"thumb":{"holo":[[0.046,0.245],[0.105,0.174],[0.181,0.138],[0.255,0.141],[0.309,0.199],[0.354,0.281],[0.401,0.355],[0.454,0.409],[0.493,0.395],[0.524,0.36],[0.562,0.293],[0.598,0.21],[0.639,0.139],[0.685,0.087],[0.811,0.0],[0.859,0.036],[0.821,0.165],[0.849,0.265],[0.889,0.347],[0.936,0.391],[0.987,0.383]],"apo":[[0.0,0.36],[0.05,0.291],[0.11,0.22],[0.171,0.161],[0.234,0.15],[0.299,0.171],[0.355,0.232],[0.398,0.306],[0.435,0.355],[0.476,0.377],[0.507,0.347],[0.554,0.279],[0.603,0.202],[0.66,0.143],[0.726,0.112],[0.803,0.052],[0.842,0.086],[0.843,0.175],[0.852,0.283],[0.894,0.345],[0.946,0.371],[1.0,0.353]]},"method":"X-ray","resolution":2.54,"rna_type":"Ribosomal RNA","rna_group":"Protein synthesis","num_chains":2,"total_rna_len":42,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":96,"pocket_motifs":["internal loop","stem"],"rmsd":2.69,"host_chain_rmsd":2.15,"pocket_rmsd":2.57,"lig_bsa":426.8,"ligand_burial":0.674,"tm_score":0.306,"rg_apo":17.97,"rg_holo":18.13,"rg_delta":0.16,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":2,"bp_conserved":18,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":16,"maxd":6.2,"water":2,"hbonds":6,"mw":467.5,"logp":-6.3,"thumb_img":true,"thumb_v":1785389617,"apo_alts":[],"n_apo_copies":0},{"id":"1LC4_TOY_B_D_48_pocket","title":"1LC4 (TOY) vs 3BNL (apo)","struct_title":"Crystal Structure of Tobramycin Bound to the Eubacterial 16S rRNA A Site","holo_pdb":"1LC4","ligand":"TOY","holo_chain":"B","holo_rna_chain":"B","lig_auth_chain":"B","nearest_rna_chain":"B","lig_resseq":"48","apo_pdb":"3BNL","apo_chain":"A","holo_len":21,"apo_len":22,"pocket_size":17,"thumb":{"holo":[[0.053,0.251],[0.115,0.179],[0.187,0.136],[0.255,0.141],[0.312,0.193],[0.359,0.273],[0.406,0.35],[0.452,0.405],[0.488,0.416],[0.518,0.381],[0.554,0.31],[0.591,0.229],[0.621,0.136],[0.681,0.095],[0.806,0.0],[0.859,0.029],[0.82,0.165],[0.854,0.256],[0.896,0.34],[0.938,0.392],[0.992,0.4]],"apo":[[0.0,0.363],[0.05,0.298],[0.109,0.227],[0.171,0.166],[0.234,0.151],[0.299,0.168],[0.355,0.227],[0.398,0.302],[0.436,0.355],[0.476,0.382],[0.507,0.357],[0.553,0.292],[0.602,0.215],[0.659,0.153],[0.726,0.118],[0.802,0.055],[0.842,0.085],[0.844,0.171],[0.853,0.279],[0.895,0.344],[0.946,0.375],[1.0,0.36]]},"method":"X-ray","resolution":2.54,"rna_type":"Ribosomal RNA","rna_group":"Protein synthesis","num_chains":2,"total_rna_len":42,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":96,"pocket_motifs":["internal loop","stem"],"rmsd":2.69,"host_chain_rmsd":2.38,"pocket_rmsd":2.77,"lig_bsa":433.1,"ligand_burial":0.674,"tm_score":0.224,"rg_apo":17.97,"rg_holo":18.1,"rg_delta":0.13,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":2,"bp_conserved":18,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":16,"maxd":5.9,"water":3,"hbonds":6,"mw":467.5,"logp":-6.3,"thumb_img":true,"thumb_v":1785389618,"apo_alts":[],"n_apo_copies":0},{"id":"1MWL_GET_A_C_45_pocket","title":"1MWL (GET) vs 3BNL (apo)","struct_title":"Crystal structure of geneticin bound to the eubacterial 16S rRNA A site","holo_pdb":"1MWL","ligand":"GET","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"45","apo_pdb":"3BNL","apo_chain":"A","holo_len":21,"apo_len":22,"pocket_size":17,"thumb":{"holo":[[0.043,0.234],[0.116,0.175],[0.189,0.15],[0.257,0.151],[0.312,0.219],[0.357,0.301],[0.409,0.378],[0.464,0.418],[0.503,0.394],[0.531,0.355],[0.561,0.28],[0.599,0.195],[0.632,0.116],[0.683,0.073],[0.795,0.0],[0.885,0.044],[0.822,0.172],[0.842,0.27],[0.878,0.353],[0.915,0.403],[0.971,0.404]],"apo":[[0.0,0.363],[0.05,0.291],[0.11,0.219],[0.171,0.163],[0.235,0.157],[0.3,0.183],[0.355,0.246],[0.398,0.318],[0.435,0.362],[0.476,0.379],[0.507,0.342],[0.554,0.27],[0.603,0.193],[0.66,0.137],[0.727,0.112],[0.803,0.056],[0.843,0.096],[0.844,0.188],[0.853,0.296],[0.894,0.354],[0.946,0.374],[1.0,0.35]]},"method":"X-ray","resolution":2.4,"rna_type":"Ribosomal RNA","rna_group":"Protein synthesis","num_chains":2,"total_rna_len":42,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":95,"pocket_motifs":["internal loop","stem"],"rmsd":3.09,"host_chain_rmsd":2.61,"pocket_rmsd":3.19,"lig_bsa":453.0,"ligand_burial":0.699,"tm_score":0.257,"rg_apo":17.97,"rg_holo":17.98,"rg_delta":0.01,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":2,"bp_conserved":18,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":16,"maxd":7.3,"water":1,"hbonds":8,"mw":496.6,"logp":-5.61,"thumb_img":true,"thumb_v":1785389618,"apo_alts":[],"n_apo_copies":0},{"id":"1MWL_GET_A_D_46_pocket","title":"1MWL (GET) vs 3BNL (apo)","struct_title":"Crystal structure of geneticin bound to the eubacterial 16S rRNA A site","holo_pdb":"1MWL","ligand":"GET","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"B","lig_resseq":"46","apo_pdb":"3BNL","apo_chain":"A","holo_len":21,"apo_len":22,"pocket_size":16,"thumb":{"holo":[[0.043,0.234],[0.116,0.175],[0.189,0.15],[0.257,0.151],[0.312,0.219],[0.357,0.301],[0.409,0.378],[0.464,0.418],[0.503,0.394],[0.531,0.355],[0.561,0.28],[0.599,0.195],[0.632,0.116],[0.683,0.073],[0.795,0.0],[0.885,0.044],[0.822,0.172],[0.842,0.27],[0.878,0.353],[0.915,0.403],[0.971,0.404]],"apo":[[0.0,0.363],[0.05,0.291],[0.11,0.219],[0.171,0.163],[0.235,0.157],[0.3,0.183],[0.355,0.246],[0.398,0.318],[0.435,0.362],[0.476,0.379],[0.507,0.342],[0.554,0.27],[0.603,0.193],[0.66,0.137],[0.727,0.112],[0.803,0.056],[0.843,0.096],[0.844,0.188],[0.853,0.296],[0.894,0.354],[0.946,0.374],[1.0,0.35]]},"method":"X-ray","resolution":2.4,"rna_type":"Ribosomal RNA","rna_group":"Protein synthesis","num_chains":2,"total_rna_len":42,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":95,"pocket_motifs":["internal loop","stem"],"rmsd":3.09,"host_chain_rmsd":2.61,"pocket_rmsd":3.6,"lig_bsa":473.9,"ligand_burial":0.703,"tm_score":0.257,"rg_apo":17.97,"rg_holo":17.98,"rg_delta":0.01,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":2,"bp_conserved":18,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":16,"maxd":7.3,"water":0,"hbonds":8,"mw":496.6,"logp":-5.61,"thumb_img":true,"thumb_v":1785488729,"apo_alts":[],"n_apo_copies":0},{"id":"1NYI_5GP_A_D_500_pocket","title":"1NYI (5GP) vs 1MME (apo)","struct_title":"Crosslinked Hammerhead Ribozyme Initial State","holo_pdb":"1NYI","ligand":"5GP","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"500","apo_pdb":"1MME","apo_chain":"C","holo_len":16,"apo_len":16,"pocket_size":7,"thumb":{"holo":[[0.498,0.733],[0.598,0.754],[0.733,0.708],[0.855,0.617],[0.973,0.502],[1.0,0.352],[0.961,0.195],[0.886,0.008],[0.805,0.114],[0.63,0.145],[0.483,0.243],[0.375,0.24],[0.248,0.272],[0.138,0.293],[0.074,0.341],[0.06,0.437]],"apo":[[0.541,0.757],[0.611,0.774],[0.745,0.718],[0.864,0.621],[0.979,0.499],[0.985,0.355],[0.957,0.189],[0.897,0.0],[0.807,0.112],[0.637,0.155],[0.483,0.234],[0.39,0.242],[0.251,0.267],[0.127,0.288],[0.046,0.326],[0.0,0.418]]},"method":"X-ray","resolution":2.85,"rna_type":"Hammerhead ribozyme","rna_group":"Catalytic (ribozyme)","num_chains":2,"total_rna_len":40,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["stem"],"rmsd":0.97,"host_chain_rmsd":0.92,"pocket_rmsd":1.35,"lig_bsa":215.5,"ligand_burial":0.514,"tm_score":0.505,"rg_apo":13.79,"rg_holo":13.46,"rg_delta":-0.33,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":1,"bp_conserved":17,"bp_formed_wc":0,"bp_broken_wc":1,"bp_conserved_wc":12,"maxd":2.1,"water":0,"hbonds":2,"mw":363.2,"logp":-2.57,"thumb_img":true,"thumb_v":1785389618,"apo_alts":[{"pdb":"299D","rmsd":0.63,"host_chain_rmsd":0.63,"apo_chain":"A","apo_len":16,"identity":100,"global_identity":100,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.562,"rg_delta":-0.05,"pocket_rmsd":0.98,"maxd":1.4,"bp_formed":0,"bp_broken":2,"bp_conserved":17},{"pdb":"301D","rmsd":0.69,"host_chain_rmsd":0.69,"apo_chain":"A","apo_len":16,"identity":100,"global_identity":100,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.506,"rg_delta":-0.05,"pocket_rmsd":0.9,"maxd":1.4,"bp_formed":0,"bp_broken":2,"bp_conserved":17},{"pdb":"359D","rmsd":0.77,"host_chain_rmsd":0.77,"apo_chain":"A","apo_len":16,"identity":100,"global_identity":100,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.559,"rg_delta":-0.28,"pocket_rmsd":1.14,"maxd":1.8,"bp_formed":0,"bp_broken":1,"bp_conserved":17}],"n_apo_copies":0},{"id":"1O15_TEP_A_B_34_pocket","title":"1O15 (TEP) vs 9JA9 (apo)","struct_title":"THEOPHYLLINE-BINDING RNA IN COMPLEX WITH THEOPHYLLINE, NMR, REGULARIZED MEAN STRUCTURE, REFINEMENT WITH TORSION ANGLE AND BASE-BASE POSITIONAL DATABASE POTENTIALS AND DIPOLAR COUPLINGS","holo_pdb":"1O15","ligand":"TEP","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"34","apo_pdb":"9JA9","apo_chain":"A","holo_len":33,"apo_len":33,"pocket_size":13,"thumb":{"holo":[[0.082,0.244],[0.117,0.353],[0.162,0.434],[0.222,0.468],[0.29,0.447],[0.364,0.373],[0.502,0.319],[0.521,0.212],[0.569,0.12],[0.615,0.094],[0.658,0.131],[0.711,0.212],[0.786,0.304],[0.869,0.347],[1.0,0.357],[0.924,0.382],[0.835,0.436],[0.764,0.438],[0.703,0.416],[0.633,0.351],[0.538,0.286],[0.396,0.285],[0.317,0.193],[0.38,0.146],[0.509,0.067],[0.434,0.057],[0.277,0.0],[0.315,0.146],[0.263,0.225],[0.205,0.33],[0.138,0.409],[0.071,0.435],[0.0,0.417]],"apo":[[0.056,0.253],[0.116,0.359],[0.196,0.427],[0.266,0.439],[0.326,0.429],[0.368,0.361],[0.426,0.256],[0.486,0.169],[0.542,0.087],[0.594,0.079],[0.639,0.142],[0.689,0.231],[0.765,0.325],[0.856,0.366],[0.999,0.37],[0.942,0.408],[0.865,0.476],[0.781,0.446],[0.701,0.426],[0.629,0.362],[0.552,0.281],[0.404,0.259],[0.316,0.175],[0.334,0.118],[0.493,0.078],[0.446,0.045],[0.37,0.085],[0.292,0.129],[0.244,0.216],[0.207,0.328],[0.167,0.434],[0.107,0.478],[0.033,0.446]]},"method":"NMR","resolution":null,"rna_type":"Aptamer","rna_group":"Aptamer","num_chains":1,"total_rna_len":33,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":97,"pocket_motifs":["internal loop","stem"],"rmsd":2.66,"host_chain_rmsd":2.66,"pocket_rmsd":3.59,"lig_bsa":244.9,"ligand_burial":0.776,"tm_score":0.304,"rg_apo":14.78,"rg_holo":14.75,"rg_delta":-0.03,"bp_rewire_src":"dssr","bp_formed":1,"bp_broken":4,"bp_conserved":14,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":9,"maxd":7.2,"water":0,"hbonds":2,"mw":180.2,"logp":-1.04,"thumb_img":true,"thumb_v":1785451615,"apo_alts":[{"pdb":"9JA7","rmsd":2.64,"host_chain_rmsd":2.64,"apo_chain":"A","apo_len":33,"identity":100,"global_identity":97,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.305,"rg_delta":-0.04,"pocket_rmsd":3.58,"maxd":7.2,"bp_formed":1,"bp_broken":4,"bp_conserved":14}],"n_apo_copies":0},{"id":"1O9M_42B_B_F_2502_pocket","title":"1O9M (42B) vs 3BNL (apo)","struct_title":"The Complex of a novel antibiotic with the Aminoacyl Site of the Bacterial Ribosome Revealed by X-Ray Crystallography.","holo_pdb":"1O9M","ligand":"42B","holo_chain":"B","holo_rna_chain":"B","lig_auth_chain":"B","nearest_rna_chain":"B","lig_resseq":"2502","apo_pdb":"3BNL","apo_chain":"A","holo_len":21,"apo_len":22,"pocket_size":10,"thumb":{"holo":[[0.045,0.162],[0.115,0.235],[0.184,0.271],[0.253,0.273],[0.323,0.257],[0.371,0.175],[0.408,0.094],[0.439,0.028],[0.474,0.0],[0.51,0.022],[0.55,0.09],[0.591,0.172],[0.629,0.265],[0.686,0.317],[0.808,0.414],[0.864,0.395],[0.835,0.269],[0.867,0.179],[0.899,0.087],[0.938,0.032],[0.983,0.01]],"apo":[[0.0,0.064],[0.05,0.122],[0.11,0.19],[0.172,0.254],[0.235,0.276],[0.301,0.265],[0.357,0.21],[0.399,0.133],[0.436,0.073],[0.476,0.038],[0.507,0.053],[0.553,0.11],[0.603,0.186],[0.66,0.251],[0.727,0.293],[0.804,0.361],[0.844,0.34],[0.845,0.259],[0.854,0.153],[0.895,0.083],[0.946,0.043],[1.0,0.05]]},"method":"X-ray","resolution":2.4,"rna_type":"Ribosomal RNA","rna_group":"Protein synthesis","num_chains":2,"total_rna_len":42,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":95,"pocket_motifs":["internal loop","stem"],"rmsd":2.58,"host_chain_rmsd":2.23,"pocket_rmsd":2.93,"lig_bsa":119.6,"ligand_burial":0.485,"tm_score":0.271,"rg_apo":17.97,"rg_holo":18.14,"rg_delta":0.17,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":2,"bp_conserved":18,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":16,"maxd":8.0,"water":3,"hbonds":0,"mw":119.1,"logp":-1.22,"thumb_img":true,"thumb_v":1785389618,"apo_alts":[],"n_apo_copies":0},{"id":"1O9M_BDG_B_C_2499_pocket","title":"1O9M (BDG) vs 3BNL (apo)","struct_title":"The Complex of a novel antibiotic with the Aminoacyl Site of the Bacterial Ribosome Revealed by X-Ray Crystallography.","holo_pdb":"1O9M","ligand":"BDG","holo_chain":"B","holo_rna_chain":"B","lig_auth_chain":"B","nearest_rna_chain":"B","lig_resseq":"2499","apo_pdb":"3BNL","apo_chain":"A","holo_len":21,"apo_len":22,"pocket_size":10,"thumb":{"holo":[[0.045,0.162],[0.115,0.235],[0.184,0.271],[0.253,0.273],[0.323,0.257],[0.371,0.175],[0.408,0.094],[0.439,0.028],[0.474,0.0],[0.51,0.022],[0.55,0.09],[0.591,0.172],[0.629,0.265],[0.686,0.317],[0.808,0.414],[0.864,0.395],[0.835,0.269],[0.867,0.179],[0.899,0.087],[0.938,0.032],[0.983,0.01]],"apo":[[0.0,0.064],[0.05,0.122],[0.11,0.19],[0.172,0.254],[0.235,0.276],[0.301,0.265],[0.357,0.21],[0.399,0.133],[0.436,0.073],[0.476,0.038],[0.507,0.053],[0.553,0.11],[0.603,0.186],[0.66,0.251],[0.727,0.293],[0.804,0.361],[0.844,0.34],[0.845,0.259],[0.854,0.153],[0.895,0.083],[0.946,0.043],[1.0,0.05]]},"method":"X-ray","resolution":2.4,"rna_type":"Ribosomal RNA","rna_group":"Protein synthesis","num_chains":2,"total_rna_len":42,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":95,"pocket_motifs":["internal loop","stem"],"rmsd":2.58,"host_chain_rmsd":2.23,"pocket_rmsd":2.14,"lig_bsa":222.7,"ligand_burial":0.697,"tm_score":0.271,"rg_apo":17.97,"rg_holo":18.14,"rg_delta":0.17,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":2,"bp_conserved":18,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":16,"maxd":8.0,"water":2,"hbonds":3,"mw":178.2,"logp":-3.29,"thumb_img":true,"thumb_v":1785389618,"apo_alts":[],"n_apo_copies":0},{"id":"1O9M_P24_B_E_2501_pocket","title":"1O9M (P24) vs 3BNL (apo)","struct_title":"The Complex of a novel antibiotic with the Aminoacyl Site of the Bacterial Ribosome Revealed by X-Ray Crystallography.","holo_pdb":"1O9M","ligand":"P24","holo_chain":"B","holo_rna_chain":"B","lig_auth_chain":"B","nearest_rna_chain":"A","lig_resseq":"2501","apo_pdb":"3BNL","apo_chain":"A","holo_len":21,"apo_len":22,"pocket_size":10,"thumb":{"holo":[[0.045,0.162],[0.115,0.235],[0.184,0.271],[0.253,0.273],[0.323,0.257],[0.371,0.175],[0.408,0.094],[0.439,0.028],[0.474,0.0],[0.51,0.022],[0.55,0.09],[0.591,0.172],[0.629,0.265],[0.686,0.317],[0.808,0.414],[0.864,0.395],[0.835,0.269],[0.867,0.179],[0.899,0.087],[0.938,0.032],[0.983,0.01]],"apo":[[0.0,0.064],[0.05,0.122],[0.11,0.19],[0.172,0.254],[0.235,0.276],[0.301,0.265],[0.357,0.21],[0.399,0.133],[0.436,0.073],[0.476,0.038],[0.507,0.053],[0.553,0.11],[0.603,0.186],[0.66,0.251],[0.727,0.293],[0.804,0.361],[0.844,0.34],[0.845,0.259],[0.854,0.153],[0.895,0.083],[0.946,0.043],[1.0,0.05]]},"method":"X-ray","resolution":2.4,"rna_type":"Ribosomal RNA","rna_group":"Protein synthesis","num_chains":2,"total_rna_len":42,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":95,"pocket_motifs":["internal loop","stem"],"rmsd":2.58,"host_chain_rmsd":2.23,"pocket_rmsd":3.65,"lig_bsa":154.7,"ligand_burial":0.531,"tm_score":0.271,"rg_apo":17.97,"rg_holo":18.14,"rg_delta":0.17,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":2,"bp_conserved":18,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":16,"maxd":8.0,"water":0,"hbonds":0,"mw":131.2,"logp":-0.73,"thumb_img":true,"thumb_v":1785488729,"apo_alts":[],"n_apo_copies":0},{"id":"1O9M_PA2_B_D_2500_pocket","title":"1O9M (PA2) vs 3BNL (apo)","struct_title":"The Complex of a novel antibiotic with the Aminoacyl Site of the Bacterial Ribosome Revealed by X-Ray Crystallography.","holo_pdb":"1O9M","ligand":"PA2","holo_chain":"B","holo_rna_chain":"B","lig_auth_chain":"B","nearest_rna_chain":"B","lig_resseq":"2500","apo_pdb":"3BNL","apo_chain":"A","holo_len":21,"apo_len":22,"pocket_size":12,"thumb":{"holo":[[0.045,0.162],[0.115,0.235],[0.184,0.271],[0.253,0.273],[0.323,0.257],[0.371,0.175],[0.408,0.094],[0.439,0.028],[0.474,0.0],[0.51,0.022],[0.55,0.09],[0.591,0.172],[0.629,0.265],[0.686,0.317],[0.808,0.414],[0.864,0.395],[0.835,0.269],[0.867,0.179],[0.899,0.087],[0.938,0.032],[0.983,0.01]],"apo":[[0.0,0.064],[0.05,0.122],[0.11,0.19],[0.172,0.254],[0.235,0.276],[0.301,0.265],[0.357,0.21],[0.399,0.133],[0.436,0.073],[0.476,0.038],[0.507,0.053],[0.553,0.11],[0.603,0.186],[0.66,0.251],[0.727,0.293],[0.804,0.361],[0.844,0.34],[0.845,0.259],[0.854,0.153],[0.895,0.083],[0.946,0.043],[1.0,0.05]]},"method":"X-ray","resolution":2.4,"rna_type":"Ribosomal RNA","rna_group":"Protein synthesis","num_chains":2,"total_rna_len":42,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":95,"pocket_motifs":["internal loop","stem"],"rmsd":2.58,"host_chain_rmsd":2.23,"pocket_rmsd":2.51,"lig_bsa":159.9,"ligand_burial":0.565,"tm_score":0.271,"rg_apo":17.97,"rg_holo":18.14,"rg_delta":0.17,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":2,"bp_conserved":18,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":16,"maxd":8.0,"water":2,"hbonds":4,"mw":146.2,"logp":-1.84,"thumb_img":true,"thumb_v":1785389618,"apo_alts":[],"n_apo_copies":0},{"id":"1UTS_P13_B_B_1046_pocket","title":"1UTS (P13) vs 8THV (apo)","struct_title":"Designed HIV-1 TAR Binding Ligand","holo_pdb":"1UTS","ligand":"P13","holo_chain":"B","holo_rna_chain":"B","lig_auth_chain":"B","nearest_rna_chain":"B","lig_resseq":"1046","apo_pdb":"8THV","apo_chain":"A","holo_len":29,"apo_len":29,"pocket_size":11,"thumb":{"holo":[[0.806,0.496],[0.862,0.48],[0.872,0.37],[0.841,0.265],[0.772,0.182],[0.693,0.146],[0.58,0.125],[0.531,0.0],[0.367,0.06],[0.483,0.167],[0.443,0.152],[0.355,0.205],[0.255,0.265],[0.174,0.244],[0.056,0.257],[0.0,0.377],[0.147,0.379],[0.202,0.451],[0.318,0.379],[0.251,0.443],[0.304,0.414],[0.39,0.361],[0.502,0.323],[0.61,0.271],[0.705,0.217],[0.794,0.198],[0.901,0.206],[0.966,0.292],[1.0,0.397]],"apo":[[0.855,0.473],[0.817,0.479],[0.766,0.432],[0.705,0.352],[0.636,0.264],[0.555,0.23],[0.436,0.191],[0.573,0.08],[0.544,0.045],[0.483,0.078],[0.421,0.155],[0.359,0.248],[0.298,0.33],[0.178,0.345],[0.296,0.447],[0.267,0.351],[0.142,0.275],[0.251,0.276],[0.382,0.262],[0.344,0.356],[0.4,0.387],[0.458,0.363],[0.517,0.289],[0.574,0.194],[0.641,0.158],[0.714,0.158],[0.789,0.212],[0.857,0.301],[0.922,0.392]]},"method":"NMR","resolution":null,"rna_type":"HIV TAR","rna_group":"Transcription regulation","num_chains":1,"total_rna_len":29,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["bulge","stem"],"rmsd":7.54,"host_chain_rmsd":7.54,"pocket_rmsd":7.25,"lig_bsa":280.7,"ligand_burial":0.418,"tm_score":0.178,"rg_apo":13.08,"rg_holo":15.7,"rg_delta":2.62,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":3,"bp_conserved":10,"bp_formed_wc":0,"bp_broken_wc":1,"bp_conserved_wc":10,"maxd":15.6,"water":0,"hbonds":1,"mw":407.6,"logp":2.56,"thumb_img":true,"thumb_v":1785389618,"apo_alts":[{"pdb":"1ANR","rmsd":5.38,"host_chain_rmsd":5.38,"apo_chain":"A","apo_len":29,"identity":100,"global_identity":100,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.153,"rg_delta":1.4,"pocket_rmsd":4.62,"maxd":10.7,"bp_formed":0,"bp_broken":2,"bp_conserved":10},{"pdb":"7JU1","rmsd":6.18,"host_chain_rmsd":6.18,"apo_chain":"X","apo_len":29,"identity":100,"global_identity":100,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.221,"rg_delta":1.97,"pocket_rmsd":5.0,"maxd":10.3,"bp_formed":0,"bp_broken":2,"bp_conserved":10},{"pdb":"8U3M","rmsd":9.09,"host_chain_rmsd":9.09,"apo_chain":"A","apo_len":31,"identity":94,"global_identity":94,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.219,"rg_delta":2.12,"pocket_rmsd":9.15,"maxd":16.9,"bp_formed":4,"bp_broken":8,"bp_conserved":6}],"n_apo_copies":0},{"id":"1UUD_P14_B_B_1046_pocket","title":"1UUD (P14) vs 8THV (apo)","struct_title":"NMR structure of a synthetic small molecule, rbt203, bound to HIV-1 TAR RNA","holo_pdb":"1UUD","ligand":"P14","holo_chain":"B","holo_rna_chain":"B","lig_auth_chain":"B","nearest_rna_chain":"B","lig_resseq":"1046","apo_pdb":"8THV","apo_chain":"A","holo_len":29,"apo_len":29,"pocket_size":18,"thumb":{"holo":[[0.821,0.473],[0.827,0.517],[0.825,0.477],[0.805,0.38],[0.741,0.283],[0.666,0.186],[0.51,0.119],[0.542,0.0],[0.667,0.073],[0.543,0.097],[0.45,0.141],[0.397,0.235],[0.306,0.337],[0.239,0.335],[0.093,0.367],[0.0,0.442],[0.142,0.393],[0.247,0.438],[0.339,0.413],[0.334,0.477],[0.421,0.456],[0.497,0.385],[0.555,0.283],[0.661,0.207],[0.743,0.171],[0.838,0.186],[0.927,0.264],[0.984,0.368],[1.0,0.452]],"apo":[[0.912,0.499],[0.866,0.525],[0.81,0.491],[0.746,0.413],[0.675,0.316],[0.591,0.264],[0.459,0.246],[0.612,0.122],[0.587,0.054],[0.523,0.07],[0.456,0.139],[0.386,0.234],[0.315,0.327],[0.182,0.357],[0.305,0.47],[0.275,0.385],[0.141,0.308],[0.257,0.321],[0.396,0.329],[0.356,0.398],[0.419,0.415],[0.486,0.373],[0.554,0.285],[0.619,0.187],[0.69,0.166],[0.766,0.186],[0.843,0.26],[0.913,0.361],[0.98,0.453]]},"method":"NMR","resolution":null,"rna_type":"HIV TAR","rna_group":"Transcription regulation","num_chains":1,"total_rna_len":29,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["hairpin loop","bulge","stem"],"rmsd":4.95,"host_chain_rmsd":4.95,"pocket_rmsd":4.26,"lig_bsa":389.3,"ligand_burial":0.668,"tm_score":0.187,"rg_apo":13.08,"rg_holo":14.4,"rg_delta":1.32,"bp_rewire_src":"dssr","bp_formed":2,"bp_broken":3,"bp_conserved":10,"bp_formed_wc":0,"bp_broken_wc":1,"bp_conserved_wc":10,"maxd":12.6,"water":0,"hbonds":5,"mw":353.5,"logp":-3.73,"thumb_img":true,"thumb_v":1785389618,"apo_alts":[{"pdb":"1ANR","rmsd":5.21,"host_chain_rmsd":5.21,"apo_chain":"A","apo_len":29,"identity":100,"global_identity":100,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.157,"rg_delta":0.1,"pocket_rmsd":4.86,"maxd":11.3,"bp_formed":2,"bp_broken":2,"bp_conserved":10},{"pdb":"7JU1","rmsd":4.17,"host_chain_rmsd":4.17,"apo_chain":"X","apo_len":29,"identity":100,"global_identity":100,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.202,"rg_delta":0.67,"pocket_rmsd":4.36,"maxd":11.1,"bp_formed":2,"bp_broken":2,"bp_conserved":10},{"pdb":"8U3M","rmsd":5.97,"host_chain_rmsd":5.97,"apo_chain":"A","apo_len":31,"identity":94,"global_identity":94,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.238,"rg_delta":0.82,"pocket_rmsd":6.06,"maxd":11.9,"bp_formed":6,"bp_broken":8,"bp_conserved":6}],"n_apo_copies":0},{"id":"1UUI_P12_B_B_1046_pocket","title":"1UUI (P12) vs 8THV (apo)","struct_title":"NMR structure of a synthetic small molecule, rbt158, bound to HIV-1 TAR RNA","holo_pdb":"1UUI","ligand":"P12","holo_chain":"B","holo_rna_chain":"B","lig_auth_chain":"B","nearest_rna_chain":"B","lig_resseq":"1046","apo_pdb":"8THV","apo_chain":"A","holo_len":29,"apo_len":29,"pocket_size":16,"thumb":{"holo":[[0.175,0.0],[0.138,0.018],[0.135,0.103],[0.174,0.207],[0.253,0.28],[0.341,0.311],[0.503,0.367],[0.507,0.497],[0.362,0.454],[0.476,0.375],[0.559,0.313],[0.616,0.217],[0.699,0.122],[0.803,0.157],[0.925,0.225],[1.0,0.234],[0.863,0.189],[0.797,0.127],[0.741,0.099],[0.694,0.044],[0.608,0.037],[0.543,0.084],[0.488,0.157],[0.413,0.228],[0.324,0.301],[0.22,0.34],[0.108,0.308],[0.032,0.219],[0.0,0.124]],"apo":[[0.117,0.0],[0.16,0.004],[0.215,0.061],[0.279,0.148],[0.351,0.238],[0.433,0.267],[0.561,0.32],[0.418,0.43],[0.444,0.452],[0.505,0.41],[0.568,0.324],[0.631,0.227],[0.696,0.148],[0.822,0.14],[0.7,0.035],[0.732,0.143],[0.864,0.226],[0.751,0.228],[0.618,0.251],[0.654,0.14],[0.593,0.099],[0.53,0.116],[0.468,0.187],[0.41,0.286],[0.342,0.33],[0.268,0.339],[0.192,0.288],[0.121,0.199],[0.053,0.102]]},"method":"NMR","resolution":null,"rna_type":"HIV TAR","rna_group":"Transcription regulation","num_chains":1,"total_rna_len":29,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["hairpin loop","bulge","stem"],"rmsd":5.59,"host_chain_rmsd":5.59,"pocket_rmsd":4.58,"lig_bsa":315.4,"ligand_burial":0.552,"tm_score":0.17,"rg_apo":13.08,"rg_holo":14.86,"rg_delta":1.78,"bp_rewire_src":"dssr","bp_formed":1,"bp_broken":3,"bp_conserved":10,"bp_formed_wc":0,"bp_broken_wc":1,"bp_conserved_wc":10,"maxd":13.8,"water":0,"hbonds":3,"mw":323.4,"logp":-1.7,"thumb_img":true,"thumb_v":1785389618,"apo_alts":[{"pdb":"1ANR","rmsd":5.06,"host_chain_rmsd":5.06,"apo_chain":"A","apo_len":29,"identity":100,"global_identity":100,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.189,"rg_delta":0.56,"pocket_rmsd":5.04,"maxd":11.2,"bp_formed":1,"bp_broken":2,"bp_conserved":10},{"pdb":"7JU1","rmsd":5.65,"host_chain_rmsd":5.65,"apo_chain":"X","apo_len":29,"identity":100,"global_identity":100,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.178,"rg_delta":1.13,"pocket_rmsd":5.31,"maxd":11.8,"bp_formed":1,"bp_broken":2,"bp_conserved":10},{"pdb":"8U3M","rmsd":7.51,"host_chain_rmsd":7.51,"apo_chain":"A","apo_len":31,"identity":94,"global_identity":94,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.252,"rg_delta":1.28,"pocket_rmsd":7.5,"maxd":11.1,"bp_formed":5,"bp_broken":8,"bp_conserved":6}],"n_apo_copies":0},{"id":"1YKV_DAI_A_E_100_pocket","title":"1YKV (DAI) vs 1YKQ (apo)","struct_title":"Crystal structure of the Diels-Alder ribozyme complexed with the product of the reaction between N-pentylmaleimide and covalently attached 9-hydroxymethylanthracene","holo_pdb":"1YKV","ligand":"DAI","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"100","apo_pdb":"1YKQ","apo_chain":"C","holo_len":11,"apo_len":11,"pocket_size":15,"thumb":{"holo":[[0.0,0.614],[0.002,0.464],[0.128,0.274],[0.275,0.157],[0.45,0.06],[0.643,0.02],[0.81,0.068],[0.934,0.21],[1.0,0.388],[0.997,0.571],[0.956,0.685]],"apo":[[0.002,0.604],[0.019,0.449],[0.14,0.306],[0.288,0.174],[0.448,0.054],[0.639,0.0],[0.81,0.076],[0.928,0.197],[0.994,0.407],[0.981,0.563],[0.946,0.68]]},"method":"X-ray","resolution":3.3,"rna_type":"Catalytic","rna_group":"Catalytic (ribozyme)","num_chains":2,"total_rna_len":98,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["junction","stem"],"rmsd":1.28,"host_chain_rmsd":0.59,"pocket_rmsd":0.78,"lig_bsa":419.2,"ligand_burial":0.795,"tm_score":0.299,"rg_apo":12.52,"rg_holo":12.67,"rg_delta":0.15,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":3,"bp_conserved":22,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":19,"maxd":3.3,"water":0,"hbonds":2,"mw":375.5,"logp":3.22,"thumb_img":true,"thumb_v":1785389618,"apo_alts":[],"n_apo_copies":0},{"id":"1YLS_DAI_A_E_100_pocket","title":"1YLS (DAI) vs 1YKQ (apo)","struct_title":"Crystal structure of selenium-modified Diels-Alder ribozyme complexed with the product of the reaction between N-pentylmaleimide and covalently attached 9-hydroxymethylanthracene","holo_pdb":"1YLS","ligand":"DAI","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"100","apo_pdb":"1YKQ","apo_chain":"C","holo_len":11,"apo_len":11,"pocket_size":15,"thumb":{"holo":[[0.002,0.595],[0.004,0.459],[0.116,0.284],[0.263,0.158],[0.432,0.053],[0.62,0.018],[0.799,0.07],[0.921,0.212],[1.0,0.39],[0.978,0.56],[0.931,0.663]],"apo":[[0.0,0.597],[0.016,0.444],[0.134,0.303],[0.28,0.172],[0.437,0.054],[0.625,0.0],[0.794,0.074],[0.911,0.193],[0.977,0.4],[0.963,0.554],[0.929,0.669]]},"method":"X-ray","resolution":3.0,"rna_type":"Catalytic","rna_group":"Catalytic (ribozyme)","num_chains":2,"total_rna_len":86,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["junction","stem"],"rmsd":1.64,"host_chain_rmsd":0.59,"pocket_rmsd":1.0,"lig_bsa":418.6,"ligand_burial":0.796,"tm_score":0.249,"rg_apo":12.52,"rg_holo":12.67,"rg_delta":0.15,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":2,"bp_conserved":23,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":19,"maxd":4.5,"water":0,"hbonds":2,"mw":375.5,"logp":3.22,"thumb_img":true,"thumb_v":1785451616,"apo_alts":[],"n_apo_copies":0},{"id":"1YRJ_AM2_A_C_151_pocket","title":"1YRJ (AM2) vs 3BNL (apo)","struct_title":"Crystal Structure of Apramycin bound to a Ribosomal RNA A site oligonucleotide","holo_pdb":"1YRJ","ligand":"AM2","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"151","apo_pdb":"3BNL","apo_chain":"A","holo_len":23,"apo_len":22,"pocket_size":16,"thumb":{"holo":[[0.0,0.041],[0.154,0.066],[0.096,0.205],[0.173,0.263],[0.245,0.288],[0.313,0.306],[0.379,0.278],[0.417,0.207],[0.444,0.119],[0.47,0.051],[0.504,0.048],[0.53,0.075],[0.575,0.129],[0.618,0.216],[0.665,0.284],[0.713,0.334],[0.821,0.397],[0.871,0.372],[0.832,0.269],[0.841,0.17],[0.867,0.087],[0.898,0.027],[0.949,0.0]],"apo":[[0.048,0.108],[0.098,0.165],[0.158,0.229],[0.22,0.285],[0.281,0.3],[0.343,0.283],[0.393,0.226],[0.43,0.151],[0.463,0.095],[0.5,0.065],[0.531,0.082],[0.578,0.139],[0.629,0.21],[0.686,0.267],[0.751,0.301],[0.827,0.359],[0.864,0.333],[0.861,0.253],[0.864,0.15],[0.901,0.084],[0.948,0.048],[1.0,0.056]]},"method":"X-ray","resolution":2.7,"rna_type":"Ribosomal RNA","rna_group":"Protein synthesis","num_chains":2,"total_rna_len":45,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":96,"pocket_motifs":["internal loop","stem"],"rmsd":3.07,"host_chain_rmsd":2.79,"pocket_rmsd":3.03,"lig_bsa":445.1,"ligand_burial":0.619,"tm_score":0.288,"rg_apo":18.84,"rg_holo":17.92,"rg_delta":-0.92,"bp_rewire_src":"dssr","bp_formed":1,"bp_broken":2,"bp_conserved":18,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":16,"maxd":7.2,"water":1,"hbonds":7,"mw":539.6,"logp":-6.95,"thumb_img":true,"thumb_v":1785389618,"apo_alts":[],"n_apo_copies":0},{"id":"1YRJ_AM2_B_E_150_pocket","title":"1YRJ (AM2) vs 3BNL (apo)","struct_title":"Crystal Structure of Apramycin bound to a Ribosomal RNA A site oligonucleotide","holo_pdb":"1YRJ","ligand":"AM2","holo_chain":"B","holo_rna_chain":"B","lig_auth_chain":"B","nearest_rna_chain":"B","lig_resseq":"150","apo_pdb":"3BNL","apo_chain":"B","holo_len":22,"apo_len":22,"pocket_size":19,"thumb":{"holo":[[1.0,0.093],[0.936,0.183],[0.861,0.236],[0.789,0.262],[0.711,0.256],[0.659,0.212],[0.611,0.124],[0.572,0.041],[0.535,0.0],[0.502,0.0],[0.472,0.046],[0.445,0.121],[0.404,0.209],[0.358,0.288],[0.29,0.318],[0.138,0.325],[0.131,0.354],[0.191,0.231],[0.17,0.143],[0.12,0.068],[0.09,0.017],[0.039,0.031]],"apo":[[0.995,0.064],[0.942,0.132],[0.879,0.205],[0.818,0.257],[0.757,0.258],[0.692,0.233],[0.639,0.167],[0.597,0.095],[0.563,0.049],[0.522,0.034],[0.487,0.066],[0.44,0.137],[0.387,0.214],[0.33,0.266],[0.261,0.29],[0.114,0.366],[0.149,0.302],[0.151,0.213],[0.144,0.104],[0.104,0.04],[0.054,0.023],[0.0,0.042]]},"method":"X-ray","resolution":2.7,"rna_type":"Ribosomal RNA","rna_group":"Protein synthesis","num_chains":2,"total_rna_len":45,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":96,"pocket_motifs":["internal loop","stem"],"rmsd":3.0,"host_chain_rmsd":2.54,"pocket_rmsd":3.18,"lig_bsa":467.7,"ligand_burial":0.625,"tm_score":0.24,"rg_apo":19.07,"rg_holo":18.41,"rg_delta":-0.66,"bp_rewire_src":"dssr","bp_formed":1,"bp_broken":2,"bp_conserved":18,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":16,"maxd":8.9,"water":4,"hbonds":5,"mw":539.6,"logp":-6.95,"thumb_img":true,"thumb_v":1785389618,"apo_alts":[],"n_apo_copies":0},{"id":"1ZZ5_CNY_A_F_42_pocket","title":"1ZZ5 (CNY) vs 1ZX7 (apo)","struct_title":"Molecular Recognition of RNA by Neomycin and a Restricted Neomycin Derivative","holo_pdb":"1ZZ5","ligand":"CNY","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"42","apo_pdb":"1ZX7","apo_chain":"A","holo_len":15,"apo_len":15,"pocket_size":17,"thumb":{"holo":[[0.931,0.001],[0.935,0.028],[0.925,0.142],[0.884,0.28],[0.805,0.432],[0.703,0.529],[0.463,0.669],[0.372,0.661],[0.429,0.454],[0.36,0.29],[0.283,0.16],[0.231,0.052],[0.154,0.0],[0.077,0.047],[0.0,0.172]],"apo":[[1.0,0.044],[0.978,0.024],[0.918,0.123],[0.848,0.261],[0.75,0.38],[0.632,0.462],[0.392,0.609],[0.384,0.675],[0.477,0.446],[0.385,0.308],[0.275,0.198],[0.222,0.085],[0.164,0.044],[0.101,0.084],[0.027,0.172]]},"method":"X-ray","resolution":3.0,"rna_type":"Ribosomal RNA","rna_group":"Protein synthesis","num_chains":2,"total_rna_len":58,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["internal loop","stem"],"rmsd":1.97,"host_chain_rmsd":2.06,"pocket_rmsd":1.94,"lig_bsa":428.0,"ligand_burial":0.546,"tm_score":0.261,"rg_apo":13.93,"rg_holo":14.33,"rg_delta":0.4,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":0,"bp_conserved":12,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":11,"maxd":3.5,"water":0,"hbonds":8,"mw":596.6,"logp":-8.24,"thumb_img":true,"thumb_v":1785389618,"apo_alts":[],"n_apo_copies":0},{"id":"1ZZ5_CNY_A_G_43_pocket","title":"1ZZ5 (CNY) vs 1ZX7 (apo)","struct_title":"Molecular Recognition of RNA by Neomycin and a Restricted Neomycin Derivative","holo_pdb":"1ZZ5","ligand":"CNY","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"43","apo_pdb":"1ZX7","apo_chain":"A","holo_len":15,"apo_len":15,"pocket_size":11,"thumb":{"holo":[[0.931,0.001],[0.935,0.028],[0.925,0.142],[0.884,0.28],[0.805,0.432],[0.703,0.529],[0.463,0.669],[0.372,0.661],[0.429,0.454],[0.36,0.29],[0.283,0.16],[0.231,0.052],[0.154,0.0],[0.077,0.047],[0.0,0.172]],"apo":[[1.0,0.044],[0.978,0.024],[0.918,0.123],[0.848,0.261],[0.75,0.38],[0.632,0.462],[0.392,0.609],[0.384,0.675],[0.477,0.446],[0.385,0.308],[0.275,0.198],[0.222,0.085],[0.164,0.044],[0.101,0.084],[0.027,0.172]]},"method":"X-ray","resolution":3.0,"rna_type":"Ribosomal RNA","rna_group":"Protein synthesis","num_chains":2,"total_rna_len":58,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["internal loop","stem","single strand"],"rmsd":1.97,"host_chain_rmsd":2.06,"pocket_rmsd":1.74,"lig_bsa":236.0,"ligand_burial":0.305,"tm_score":0.261,"rg_apo":13.93,"rg_holo":14.33,"rg_delta":0.4,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":0,"bp_conserved":12,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":11,"maxd":3.5,"water":0,"hbonds":4,"mw":596.6,"logp":-8.24,"thumb_img":true,"thumb_v":1785389618,"apo_alts":[],"n_apo_copies":0},{"id":"1ZZ5_CNY_C_H_41_pocket","title":"1ZZ5 (CNY) vs 1ZX7 (apo)","struct_title":"Molecular Recognition of RNA by Neomycin and a Restricted Neomycin Derivative","holo_pdb":"1ZZ5","ligand":"CNY","holo_chain":"C","holo_rna_chain":"C","lig_auth_chain":"C","nearest_rna_chain":"C","lig_resseq":"41","apo_pdb":"1ZX7","apo_chain":"A","holo_len":15,"apo_len":15,"pocket_size":16,"thumb":{"holo":[[0.072,0.0],[0.061,0.034],[0.076,0.148],[0.113,0.291],[0.19,0.434],[0.292,0.536],[0.529,0.673],[0.618,0.671],[0.565,0.467],[0.635,0.304],[0.71,0.183],[0.769,0.054],[0.848,0.004],[0.927,0.056],[1.0,0.175]],"apo":[[0.0,0.05],[0.022,0.029],[0.082,0.127],[0.151,0.265],[0.247,0.385],[0.364,0.468],[0.602,0.616],[0.61,0.682],[0.518,0.454],[0.611,0.318],[0.722,0.209],[0.776,0.096],[0.834,0.054],[0.897,0.094],[0.97,0.181]]},"method":"X-ray","resolution":3.0,"rna_type":"Ribosomal RNA","rna_group":"Protein synthesis","num_chains":2,"total_rna_len":58,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["internal loop","stem"],"rmsd":1.99,"host_chain_rmsd":2.11,"pocket_rmsd":1.94,"lig_bsa":387.5,"ligand_burial":0.513,"tm_score":0.242,"rg_apo":13.93,"rg_holo":14.38,"rg_delta":0.45,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":0,"bp_conserved":12,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":11,"maxd":3.5,"water":1,"hbonds":7,"mw":596.6,"logp":-8.24,"thumb_img":true,"thumb_v":1785389618,"apo_alts":[],"n_apo_copies":0},{"id":"1ZZ5_CNY_C_I_44_pocket","title":"1ZZ5 (CNY) vs 1ZX7 (apo)","struct_title":"Molecular Recognition of RNA by Neomycin and a Restricted Neomycin Derivative","holo_pdb":"1ZZ5","ligand":"CNY","holo_chain":"C","holo_rna_chain":"C","lig_auth_chain":"C","nearest_rna_chain":"C","lig_resseq":"44","apo_pdb":"1ZX7","apo_chain":"A","holo_len":15,"apo_len":15,"pocket_size":11,"thumb":{"holo":[[0.072,0.0],[0.061,0.034],[0.076,0.148],[0.113,0.291],[0.19,0.434],[0.292,0.536],[0.529,0.673],[0.618,0.671],[0.565,0.467],[0.635,0.304],[0.71,0.183],[0.769,0.054],[0.848,0.004],[0.927,0.056],[1.0,0.175]],"apo":[[0.0,0.05],[0.022,0.029],[0.082,0.127],[0.151,0.265],[0.247,0.385],[0.364,0.468],[0.602,0.616],[0.61,0.682],[0.518,0.454],[0.611,0.318],[0.722,0.209],[0.776,0.096],[0.834,0.054],[0.897,0.094],[0.97,0.181]]},"method":"X-ray","resolution":3.0,"rna_type":"Ribosomal RNA","rna_group":"Protein synthesis","num_chains":2,"total_rna_len":58,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["internal loop","stem"],"rmsd":1.99,"host_chain_rmsd":2.11,"pocket_rmsd":1.75,"lig_bsa":248.5,"ligand_burial":0.324,"tm_score":0.242,"rg_apo":13.93,"rg_holo":14.38,"rg_delta":0.45,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":0,"bp_conserved":12,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":11,"maxd":3.5,"water":0,"hbonds":4,"mw":596.6,"logp":-8.24,"thumb_img":true,"thumb_v":1785389618,"apo_alts":[],"n_apo_copies":0},{"id":"2A04_NMY_A_E_17_pocket","title":"2A04 (NMY) vs 1ZX7 (apo)","struct_title":"Molecular Recognition of RNA by Neomycin and a Restricted Neomycin Derivative","holo_pdb":"2A04","ligand":"NMY","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"B","lig_resseq":"17","apo_pdb":"1ZX7","apo_chain":"E","holo_len":15,"apo_len":15,"pocket_size":17,"thumb":{"holo":[[0.918,0.0],[0.906,0.032],[0.893,0.136],[0.863,0.289],[0.793,0.419],[0.697,0.529],[0.459,0.669],[0.367,0.657],[0.42,0.468],[0.354,0.304],[0.295,0.161],[0.242,0.059],[0.169,0.02],[0.085,0.054],[0.0,0.16]],"apo":[[1.0,0.03],[0.956,0.041],[0.906,0.123],[0.828,0.262],[0.746,0.389],[0.639,0.476],[0.403,0.584],[0.379,0.679],[0.469,0.457],[0.375,0.314],[0.273,0.217],[0.203,0.086],[0.156,0.07],[0.11,0.064],[0.019,0.165]]},"method":"X-ray","resolution":2.95,"rna_type":"Ribosomal RNA","rna_group":"Protein synthesis","num_chains":2,"total_rna_len":58,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["internal loop","stem"],"rmsd":2.03,"host_chain_rmsd":2.09,"pocket_rmsd":1.95,"lig_bsa":505.8,"ligand_burial":0.638,"tm_score":0.245,"rg_apo":13.9,"rg_holo":14.04,"rg_delta":0.14,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":0,"bp_conserved":12,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":11,"maxd":3.9,"water":0,"hbonds":10,"mw":614.7,"logp":-8.9,"thumb_img":true,"thumb_v":1785488729,"apo_alts":[],"n_apo_copies":0},{"id":"2A04_NMY_A_F_18_pocket","title":"2A04 (NMY) vs 1ZX7 (apo)","struct_title":"Molecular Recognition of RNA by Neomycin and a Restricted Neomycin Derivative","holo_pdb":"2A04","ligand":"NMY","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"18","apo_pdb":"1ZX7","apo_chain":"E","holo_len":15,"apo_len":15,"pocket_size":10,"thumb":{"holo":[[0.918,0.0],[0.906,0.032],[0.893,0.136],[0.863,0.289],[0.793,0.419],[0.697,0.529],[0.459,0.669],[0.367,0.657],[0.42,0.468],[0.354,0.304],[0.295,0.161],[0.242,0.059],[0.169,0.02],[0.085,0.054],[0.0,0.16]],"apo":[[1.0,0.03],[0.956,0.041],[0.906,0.123],[0.828,0.262],[0.746,0.389],[0.639,0.476],[0.403,0.584],[0.379,0.679],[0.469,0.457],[0.375,0.314],[0.273,0.217],[0.203,0.086],[0.156,0.07],[0.11,0.064],[0.019,0.165]]},"method":"X-ray","resolution":2.95,"rna_type":"Ribosomal RNA","rna_group":"Protein synthesis","num_chains":2,"total_rna_len":58,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["internal loop","stem","single strand"],"rmsd":2.03,"host_chain_rmsd":2.09,"pocket_rmsd":1.85,"lig_bsa":233.1,"ligand_burial":0.285,"tm_score":0.245,"rg_apo":13.9,"rg_holo":14.04,"rg_delta":0.14,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":0,"bp_conserved":12,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":11,"maxd":3.9,"water":0,"hbonds":4,"mw":614.7,"logp":-8.9,"thumb_img":true,"thumb_v":1785389618,"apo_alts":[],"n_apo_copies":0},{"id":"2A04_NMY_C_H_1_pocket","title":"2A04 (NMY) vs 1ZX7 (apo)","struct_title":"Molecular Recognition of RNA by Neomycin and a Restricted Neomycin Derivative","holo_pdb":"2A04","ligand":"NMY","holo_chain":"C","holo_rna_chain":"C","lig_auth_chain":"C","nearest_rna_chain":"C","lig_resseq":"1","apo_pdb":"1ZX7","apo_chain":"E","holo_len":15,"apo_len":15,"pocket_size":17,"thumb":{"holo":[[0.084,0.677],[0.092,0.648],[0.107,0.543],[0.137,0.388],[0.204,0.26],[0.3,0.154],[0.537,0.014],[0.626,0.02],[0.577,0.217],[0.643,0.373],[0.704,0.511],[0.758,0.618],[0.83,0.667],[0.913,0.626],[1.0,0.511]],"apo":[[0.0,0.651],[0.044,0.639],[0.093,0.557],[0.171,0.418],[0.252,0.291],[0.359,0.204],[0.594,0.095],[0.618,0.0],[0.529,0.223],[0.623,0.365],[0.725,0.461],[0.795,0.591],[0.843,0.607],[0.888,0.614],[0.979,0.512]]},"method":"X-ray","resolution":2.95,"rna_type":"Ribosomal RNA","rna_group":"Protein synthesis","num_chains":2,"total_rna_len":58,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["internal loop","stem"],"rmsd":2.05,"host_chain_rmsd":2.09,"pocket_rmsd":1.89,"lig_bsa":495.4,"ligand_burial":0.635,"tm_score":0.253,"rg_apo":13.9,"rg_holo":14.03,"rg_delta":0.13,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":0,"bp_conserved":12,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":11,"maxd":3.8,"water":2,"hbonds":10,"mw":614.7,"logp":-8.9,"thumb_img":true,"thumb_v":1785389618,"apo_alts":[],"n_apo_copies":0},{"id":"2A04_NMY_C_I_17_pocket","title":"2A04 (NMY) vs 1ZX7 (apo)","struct_title":"Molecular Recognition of RNA by Neomycin and a Restricted Neomycin Derivative","holo_pdb":"2A04","ligand":"NMY","holo_chain":"C","holo_rna_chain":"C","lig_auth_chain":"C","nearest_rna_chain":"C","lig_resseq":"17","apo_pdb":"1ZX7","apo_chain":"E","holo_len":15,"apo_len":15,"pocket_size":11,"thumb":{"holo":[[0.084,0.677],[0.092,0.648],[0.107,0.543],[0.137,0.388],[0.204,0.26],[0.3,0.154],[0.537,0.014],[0.626,0.02],[0.577,0.217],[0.643,0.373],[0.704,0.511],[0.758,0.618],[0.83,0.667],[0.913,0.626],[1.0,0.511]],"apo":[[0.0,0.651],[0.044,0.639],[0.093,0.557],[0.171,0.418],[0.252,0.291],[0.359,0.204],[0.594,0.095],[0.618,0.0],[0.529,0.223],[0.623,0.365],[0.725,0.461],[0.795,0.591],[0.843,0.607],[0.888,0.614],[0.979,0.512]]},"method":"X-ray","resolution":2.95,"rna_type":"Ribosomal RNA","rna_group":"Protein synthesis","num_chains":2,"total_rna_len":58,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["internal loop","stem"],"rmsd":2.05,"host_chain_rmsd":2.09,"pocket_rmsd":1.84,"lig_bsa":242.8,"ligand_burial":0.31,"tm_score":0.253,"rg_apo":13.9,"rg_holo":14.03,"rg_delta":0.13,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":0,"bp_conserved":12,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":11,"maxd":3.8,"water":0,"hbonds":4,"mw":614.7,"logp":-8.9,"thumb_img":true,"thumb_v":1785389618,"apo_alts":[],"n_apo_copies":0},{"id":"2BE0_JS5_A_C_50_pocket","title":"2BE0 (JS5) vs 3BNL (apo)","struct_title":"Complex Between Paromomycin Derivative JS5-39 and the 16S-Rrna A-Site.","holo_pdb":"2BE0","ligand":"JS5","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"50","apo_pdb":"3BNL","apo_chain":"A","holo_len":21,"apo_len":22,"pocket_size":21,"thumb":{"holo":[[0.062,0.239],[0.128,0.179],[0.2,0.143],[0.263,0.164],[0.315,0.199],[0.361,0.275],[0.403,0.355],[0.456,0.401],[0.499,0.411],[0.533,0.373],[0.563,0.298],[0.587,0.21],[0.623,0.13],[0.674,0.078],[0.797,0.0],[0.859,0.04],[0.83,0.15],[0.844,0.268],[0.879,0.343],[0.918,0.4],[0.967,0.407]],"apo":[[0.0,0.362],[0.05,0.294],[0.11,0.223],[0.171,0.163],[0.234,0.152],[0.3,0.172],[0.355,0.233],[0.398,0.307],[0.436,0.357],[0.476,0.38],[0.507,0.351],[0.553,0.284],[0.603,0.207],[0.66,0.147],[0.726,0.115],[0.803,0.054],[0.843,0.087],[0.844,0.176],[0.853,0.284],[0.894,0.347],[0.946,0.374],[1.0,0.356]]},"method":"X-ray","resolution":2.63,"rna_type":"Ribosomal RNA","rna_group":"Protein synthesis","num_chains":2,"total_rna_len":42,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":95,"pocket_motifs":["internal loop","stem"],"rmsd":2.92,"host_chain_rmsd":2.48,"pocket_rmsd":2.69,"lig_bsa":577.2,"ligand_burial":0.59,"tm_score":0.252,"rg_apo":17.97,"rg_holo":17.69,"rg_delta":-0.28,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":2,"bp_conserved":18,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":16,"maxd":7.4,"water":4,"hbonds":9,"mw":755.9,"logp":-8.25,"thumb_img":true,"thumb_v":1785389618,"apo_alts":[],"n_apo_copies":0},{"id":"2BE0_JS5_B_D_51_pocket","title":"2BE0 (JS5) vs 3BNL (apo)","struct_title":"Complex Between Paromomycin Derivative JS5-39 and the 16S-Rrna A-Site.","holo_pdb":"2BE0","ligand":"JS5","holo_chain":"B","holo_rna_chain":"B","lig_auth_chain":"B","nearest_rna_chain":"B","lig_resseq":"51","apo_pdb":"3BNL","apo_chain":"A","holo_len":21,"apo_len":22,"pocket_size":21,"thumb":{"holo":[[0.062,0.172],[0.127,0.232],[0.2,0.269],[0.263,0.248],[0.316,0.213],[0.362,0.135],[0.405,0.056],[0.454,0.01],[0.499,0.0],[0.533,0.041],[0.561,0.115],[0.587,0.203],[0.622,0.284],[0.674,0.336],[0.796,0.413],[0.859,0.373],[0.831,0.258],[0.845,0.144],[0.879,0.069],[0.917,0.012],[0.969,0.001]],"apo":[[0.0,0.049],[0.05,0.118],[0.109,0.189],[0.171,0.248],[0.234,0.26],[0.3,0.239],[0.355,0.178],[0.398,0.104],[0.436,0.054],[0.476,0.032],[0.507,0.061],[0.553,0.129],[0.603,0.206],[0.66,0.266],[0.726,0.297],[0.803,0.357],[0.843,0.324],[0.844,0.235],[0.853,0.127],[0.894,0.064],[0.946,0.038],[1.0,0.056]]},"method":"X-ray","resolution":2.63,"rna_type":"Ribosomal RNA","rna_group":"Protein synthesis","num_chains":2,"total_rna_len":42,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":95,"pocket_motifs":["internal loop","stem"],"rmsd":2.92,"host_chain_rmsd":2.5,"pocket_rmsd":2.69,"lig_bsa":580.6,"ligand_burial":0.601,"tm_score":0.256,"rg_apo":17.97,"rg_holo":17.71,"rg_delta":-0.26,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":2,"bp_conserved":18,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":16,"maxd":7.5,"water":3,"hbonds":9,"mw":755.9,"logp":-8.25,"thumb_img":true,"thumb_v":1785389618,"apo_alts":[],"n_apo_copies":0},{"id":"2BEE_JS4_A_C_50_pocket","title":"2BEE (JS4) vs 3BNL (apo)","struct_title":"Complex Between Paromomycin derivative JS4 and the 16S-Rrna A Site","holo_pdb":"2BEE","ligand":"JS4","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"50","apo_pdb":"3BNL","apo_chain":"A","holo_len":21,"apo_len":22,"pocket_size":21,"thumb":{"holo":[[0.062,0.24],[0.126,0.177],[0.199,0.142],[0.261,0.164],[0.315,0.197],[0.361,0.278],[0.404,0.356],[0.454,0.404],[0.498,0.41],[0.533,0.372],[0.561,0.298],[0.588,0.21],[0.625,0.129],[0.676,0.077],[0.798,0.0],[0.859,0.04],[0.832,0.153],[0.846,0.269],[0.88,0.345],[0.918,0.402],[0.966,0.404]],"apo":[[0.0,0.362],[0.05,0.294],[0.11,0.223],[0.171,0.163],[0.235,0.152],[0.3,0.173],[0.355,0.234],[0.398,0.308],[0.436,0.358],[0.476,0.38],[0.507,0.351],[0.553,0.283],[0.603,0.206],[0.66,0.146],[0.726,0.115],[0.803,0.055],[0.843,0.088],[0.844,0.177],[0.853,0.285],[0.894,0.348],[0.946,0.374],[1.0,0.356]]},"method":"X-ray","resolution":2.6,"rna_type":"Ribosomal RNA","rna_group":"Protein synthesis","num_chains":2,"total_rna_len":42,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":95,"pocket_motifs":["internal loop","stem"],"rmsd":2.89,"host_chain_rmsd":2.46,"pocket_rmsd":2.67,"lig_bsa":568.3,"ligand_burial":0.597,"tm_score":0.255,"rg_apo":17.97,"rg_holo":17.73,"rg_delta":-0.24,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":2,"bp_conserved":18,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":16,"maxd":7.4,"water":5,"hbonds":9,"mw":715.8,"logp":-8.9,"thumb_img":true,"thumb_v":1785389618,"apo_alts":[],"n_apo_copies":0},{"id":"2BEE_JS4_B_D_51_pocket","title":"2BEE (JS4) vs 3BNL (apo)","struct_title":"Complex Between Paromomycin derivative JS4 and the 16S-Rrna A Site","holo_pdb":"2BEE","ligand":"JS4","holo_chain":"B","holo_rna_chain":"B","lig_auth_chain":"B","nearest_rna_chain":"B","lig_resseq":"51","apo_pdb":"3BNL","apo_chain":"A","holo_len":21,"apo_len":22,"pocket_size":21,"thumb":{"holo":[[0.062,0.168],[0.126,0.233],[0.199,0.267],[0.262,0.247],[0.315,0.213],[0.362,0.132],[0.404,0.056],[0.453,0.006],[0.498,0.0],[0.534,0.04],[0.562,0.113],[0.588,0.2],[0.624,0.283],[0.675,0.335],[0.797,0.411],[0.858,0.373],[0.83,0.257],[0.845,0.143],[0.881,0.067],[0.918,0.007],[0.969,0.002]],"apo":[[0.0,0.048],[0.05,0.116],[0.11,0.188],[0.171,0.247],[0.234,0.258],[0.3,0.238],[0.355,0.177],[0.398,0.103],[0.436,0.053],[0.476,0.03],[0.507,0.06],[0.553,0.127],[0.603,0.204],[0.66,0.264],[0.726,0.296],[0.803,0.356],[0.843,0.323],[0.844,0.234],[0.853,0.125],[0.894,0.063],[0.946,0.036],[1.0,0.055]]},"method":"X-ray","resolution":2.6,"rna_type":"Ribosomal RNA","rna_group":"Protein synthesis","num_chains":2,"total_rna_len":42,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":95,"pocket_motifs":["internal loop","stem"],"rmsd":2.89,"host_chain_rmsd":2.49,"pocket_rmsd":2.67,"lig_bsa":565.6,"ligand_burial":0.608,"tm_score":0.257,"rg_apo":17.97,"rg_holo":17.74,"rg_delta":-0.23,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":2,"bp_conserved":18,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":16,"maxd":7.4,"water":3,"hbonds":9,"mw":715.8,"logp":-8.9,"thumb_img":true,"thumb_v":1785389618,"apo_alts":[],"n_apo_copies":0},{"id":"2ESI_KAN_A_C_51_pocket","title":"2ESI (KAN) vs 3BNL (apo)","struct_title":"Complex between Kanamycin A and the 16S-Rrna A Site.","holo_pdb":"2ESI","ligand":"KAN","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"B","lig_resseq":"51","apo_pdb":"3BNL","apo_chain":"A","holo_len":23,"apo_len":22,"pocket_size":19,"thumb":{"holo":[[0.13,0.006],[0.059,0.08],[0.041,0.19],[0.108,0.264],[0.181,0.295],[0.261,0.284],[0.311,0.218],[0.353,0.131],[0.398,0.056],[0.459,0.0],[0.494,0.015],[0.522,0.061],[0.562,0.137],[0.601,0.226],[0.641,0.288],[0.689,0.329],[0.82,0.408],[0.863,0.367],[0.814,0.229],[0.845,0.132],[0.888,0.052],[0.934,0.015],[0.984,0.015]],"apo":[[0.0,0.073],[0.053,0.144],[0.115,0.215],[0.177,0.269],[0.24,0.272],[0.304,0.244],[0.357,0.179],[0.398,0.106],[0.434,0.061],[0.475,0.043],[0.509,0.079],[0.558,0.15],[0.609,0.225],[0.668,0.279],[0.734,0.302],[0.812,0.355],[0.849,0.314],[0.847,0.222],[0.853,0.114],[0.893,0.055],[0.944,0.034],[1.0,0.056]]},"method":"X-ray","resolution":3.0,"rna_type":"Ribosomal RNA","rna_group":"Protein synthesis","num_chains":2,"total_rna_len":44,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":96,"pocket_motifs":["internal loop","stem","single strand"],"rmsd":2.82,"host_chain_rmsd":2.4,"pocket_rmsd":3.3,"lig_bsa":481.7,"ligand_burial":0.754,"tm_score":0.245,"rg_apo":18.84,"rg_holo":18.81,"rg_delta":-0.03,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":2,"bp_conserved":18,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":16,"maxd":6.0,"water":2,"hbonds":8,"mw":484.5,"logp":-7.29,"thumb_img":true,"thumb_v":1785488729,"apo_alts":[],"n_apo_copies":0},{"id":"2ESI_KAN_A_D_50_pocket","title":"2ESI (KAN) vs 3BNL (apo)","struct_title":"Complex between Kanamycin A and the 16S-Rrna A Site.","holo_pdb":"2ESI","ligand":"KAN","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"50","apo_pdb":"3BNL","apo_chain":"A","holo_len":23,"apo_len":22,"pocket_size":17,"thumb":{"holo":[[0.13,0.006],[0.059,0.08],[0.041,0.19],[0.108,0.264],[0.181,0.295],[0.261,0.284],[0.311,0.218],[0.353,0.131],[0.398,0.056],[0.459,0.0],[0.494,0.015],[0.522,0.061],[0.562,0.137],[0.601,0.226],[0.641,0.288],[0.689,0.329],[0.82,0.408],[0.863,0.367],[0.814,0.229],[0.845,0.132],[0.888,0.052],[0.934,0.015],[0.984,0.015]],"apo":[[0.0,0.073],[0.053,0.144],[0.115,0.215],[0.177,0.269],[0.24,0.272],[0.304,0.244],[0.357,0.179],[0.398,0.106],[0.434,0.061],[0.475,0.043],[0.509,0.079],[0.558,0.15],[0.609,0.225],[0.668,0.279],[0.734,0.302],[0.812,0.355],[0.849,0.314],[0.847,0.222],[0.853,0.114],[0.893,0.055],[0.944,0.034],[1.0,0.056]]},"method":"X-ray","resolution":3.0,"rna_type":"Ribosomal RNA","rna_group":"Protein synthesis","num_chains":2,"total_rna_len":44,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":96,"pocket_motifs":["internal loop","stem"],"rmsd":2.82,"host_chain_rmsd":2.4,"pocket_rmsd":2.73,"lig_bsa":429.6,"ligand_burial":0.669,"tm_score":0.245,"rg_apo":18.84,"rg_holo":18.81,"rg_delta":-0.03,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":2,"bp_conserved":18,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":16,"maxd":6.0,"water":2,"hbonds":7,"mw":484.5,"logp":-7.29,"thumb_img":true,"thumb_v":1785389618,"apo_alts":[],"n_apo_copies":0},{"id":"2ESI_KAN_B_E_52_pocket","title":"2ESI (KAN) vs 3BNL (apo)","struct_title":"Complex between Kanamycin A and the 16S-Rrna A Site.","holo_pdb":"2ESI","ligand":"KAN","holo_chain":"B","holo_rna_chain":"B","lig_auth_chain":"B","nearest_rna_chain":"B","lig_resseq":"52","apo_pdb":"3BNL","apo_chain":"A","holo_len":21,"apo_len":22,"pocket_size":14,"thumb":{"holo":[[0.05,0.262],[0.112,0.179],[0.179,0.138],[0.256,0.145],[0.314,0.191],[0.356,0.277],[0.406,0.355],[0.455,0.415],[0.49,0.418],[0.524,0.377],[0.558,0.305],[0.591,0.223],[0.621,0.131],[0.68,0.09],[0.807,0.0],[0.858,0.029],[0.822,0.166],[0.852,0.263],[0.892,0.35],[0.939,0.395],[0.994,0.409]],"apo":[[0.0,0.366],[0.05,0.299],[0.109,0.228],[0.17,0.168],[0.234,0.154],[0.299,0.172],[0.355,0.232],[0.398,0.307],[0.436,0.359],[0.476,0.384],[0.507,0.357],[0.553,0.291],[0.602,0.214],[0.659,0.152],[0.726,0.119],[0.802,0.056],[0.842,0.087],[0.843,0.175],[0.853,0.283],[0.894,0.347],[0.946,0.376],[1.0,0.36]]},"method":"X-ray","resolution":3.0,"rna_type":"Ribosomal RNA","rna_group":"Protein synthesis","num_chains":2,"total_rna_len":44,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":96,"pocket_motifs":["internal loop","stem"],"rmsd":2.85,"host_chain_rmsd":2.49,"pocket_rmsd":3.2,"lig_bsa":220.8,"ligand_burial":0.356,"tm_score":0.3,"rg_apo":17.97,"rg_holo":18.2,"rg_delta":0.23,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":2,"bp_conserved":18,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":16,"maxd":5.9,"water":1,"hbonds":4,"mw":484.5,"logp":-7.29,"thumb_img":true,"thumb_v":1785389618,"apo_alts":[],"n_apo_copies":0},{"id":"2ESJ_LIV_A_C_50_pocket","title":"2ESJ (LIV) vs 3BNL (apo)","struct_title":"Complex between Lividomycin A and the 16S-Rrna A Site","holo_pdb":"2ESJ","ligand":"LIV","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"50","apo_pdb":"3BNL","apo_chain":"B","holo_len":21,"apo_len":22,"pocket_size":18,"thumb":{"holo":[[0.074,0.15],[0.129,0.226],[0.204,0.272],[0.274,0.265],[0.318,0.195],[0.357,0.109],[0.404,0.032],[0.453,0.0],[0.504,0.001],[0.532,0.049],[0.563,0.135],[0.593,0.221],[0.638,0.287],[0.686,0.325],[0.835,0.393],[0.855,0.349],[0.818,0.215],[0.842,0.119],[0.877,0.038],[0.922,0.001],[0.98,0.014]],"apo":[[0.0,0.045],[0.052,0.118],[0.113,0.193],[0.173,0.244],[0.234,0.242],[0.299,0.215],[0.354,0.148],[0.398,0.079],[0.434,0.038],[0.475,0.029],[0.511,0.068],[0.556,0.142],[0.607,0.221],[0.664,0.271],[0.731,0.292],[0.878,0.373],[0.844,0.299],[0.843,0.207],[0.853,0.099],[0.895,0.039],[0.946,0.028],[1.0,0.053]]},"method":"X-ray","resolution":2.2,"rna_type":"Ribosomal RNA","rna_group":"Protein synthesis","num_chains":2,"total_rna_len":42,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":95,"pocket_motifs":["internal loop","stem"],"rmsd":2.44,"host_chain_rmsd":2.23,"pocket_rmsd":2.5,"lig_bsa":499.5,"ligand_burial":0.538,"tm_score":0.244,"rg_apo":18.21,"rg_holo":17.7,"rg_delta":-0.51,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":2,"bp_conserved":18,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":16,"maxd":4.3,"water":4,"hbonds":8,"mw":761.8,"logp":-10.01,"thumb_img":true,"thumb_v":1785389618,"apo_alts":[],"n_apo_copies":0},{"id":"2ESJ_LIV_B_D_51_pocket","title":"2ESJ (LIV) vs 3BNL (apo)","struct_title":"Complex between Lividomycin A and the 16S-Rrna A Site","holo_pdb":"2ESJ","ligand":"LIV","holo_chain":"B","holo_rna_chain":"B","lig_auth_chain":"B","nearest_rna_chain":"B","lig_resseq":"51","apo_pdb":"3BNL","apo_chain":"A","holo_len":21,"apo_len":22,"pocket_size":18,"thumb":{"holo":[[0.06,0.143],[0.118,0.224],[0.195,0.281],[0.266,0.291],[0.32,0.242],[0.367,0.168],[0.411,0.083],[0.454,0.023],[0.497,0.0],[0.53,0.029],[0.563,0.1],[0.583,0.191],[0.625,0.27],[0.675,0.327],[0.782,0.394],[0.828,0.374],[0.828,0.265],[0.854,0.169],[0.889,0.08],[0.925,0.027],[0.977,0.025]],"apo":[[0.0,0.054],[0.049,0.116],[0.109,0.186],[0.17,0.249],[0.233,0.269],[0.299,0.255],[0.355,0.199],[0.398,0.123],[0.436,0.066],[0.476,0.035],[0.507,0.055],[0.553,0.117],[0.602,0.194],[0.658,0.257],[0.725,0.297],[0.801,0.363],[0.841,0.339],[0.843,0.255],[0.853,0.148],[0.895,0.081],[0.946,0.045],[1.0,0.056]]},"method":"X-ray","resolution":2.2,"rna_type":"Ribosomal RNA","rna_group":"Protein synthesis","num_chains":2,"total_rna_len":42,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":95,"pocket_motifs":["internal loop","stem"],"rmsd":2.45,"host_chain_rmsd":2.06,"pocket_rmsd":2.38,"lig_bsa":543.4,"ligand_burial":0.577,"tm_score":0.234,"rg_apo":17.97,"rg_holo":17.6,"rg_delta":-0.37,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":2,"bp_conserved":18,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":16,"maxd":4.7,"water":10,"hbonds":10,"mw":761.8,"logp":-10.01,"thumb_img":true,"thumb_v":1785389619,"apo_alts":[],"n_apo_copies":0},{"id":"2ET3_LLL_A_C_50_pocket","title":"2ET3 (LLL) vs 3BNL (apo)","struct_title":"Complex Between Gentamicin C1A and the 16S-RRNA A-Site","holo_pdb":"2ET3","ligand":"LLL","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"50","apo_pdb":"3BNL","apo_chain":"B","holo_len":21,"apo_len":22,"pocket_size":17,"thumb":{"holo":[[0.062,0.168],[0.128,0.237],[0.198,0.266],[0.266,0.254],[0.316,0.188],[0.355,0.103],[0.405,0.032],[0.459,0.0],[0.503,0.034],[0.531,0.09],[0.567,0.172],[0.602,0.252],[0.65,0.316],[0.704,0.349],[0.857,0.398],[0.879,0.356],[0.817,0.215],[0.836,0.113],[0.867,0.037],[0.91,0.005],[0.968,0.009]],"apo":[[0.0,0.061],[0.053,0.137],[0.115,0.212],[0.175,0.257],[0.236,0.248],[0.3,0.215],[0.355,0.145],[0.398,0.079],[0.434,0.046],[0.475,0.043],[0.511,0.09],[0.557,0.168],[0.609,0.244],[0.666,0.289],[0.733,0.303],[0.881,0.381],[0.845,0.296],[0.844,0.201],[0.853,0.095],[0.894,0.04],[0.946,0.037],[1.0,0.068]]},"method":"X-ray","resolution":2.8,"rna_type":"Ribosomal RNA","rna_group":"Protein synthesis","num_chains":2,"total_rna_len":42,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":95,"pocket_motifs":["internal loop","stem"],"rmsd":2.94,"host_chain_rmsd":2.34,"pocket_rmsd":3.33,"lig_bsa":437.3,"ligand_burial":0.702,"tm_score":0.293,"rg_apo":18.21,"rg_holo":17.85,"rg_delta":-0.36,"bp_rewire_src":"dssr","bp_formed":1,"bp_broken":2,"bp_conserved":18,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":16,"maxd":5.9,"water":0,"hbonds":7,"mw":449.5,"logp":-3.98,"thumb_img":true,"thumb_v":1785389619,"apo_alts":[],"n_apo_copies":0},{"id":"2ET3_LLL_B_D_51_pocket","title":"2ET3 (LLL) vs 3BNL (apo)","struct_title":"Complex Between Gentamicin C1A and the 16S-RRNA A-Site","holo_pdb":"2ET3","ligand":"LLL","holo_chain":"B","holo_rna_chain":"B","lig_auth_chain":"B","nearest_rna_chain":"B","lig_resseq":"51","apo_pdb":"3BNL","apo_chain":"A","holo_len":21,"apo_len":22,"pocket_size":16,"thumb":{"holo":[[0.061,0.203],[0.134,0.27],[0.208,0.309],[0.292,0.313],[0.334,0.258],[0.369,0.168],[0.403,0.08],[0.443,0.017],[0.48,0.0],[0.514,0.029],[0.557,0.1],[0.585,0.189],[0.618,0.278],[0.672,0.34],[0.79,0.438],[0.848,0.411],[0.822,0.292],[0.851,0.194],[0.887,0.111],[0.923,0.055],[0.979,0.047]],"apo":[[0.0,0.079],[0.05,0.14],[0.11,0.209],[0.171,0.272],[0.235,0.291],[0.301,0.278],[0.356,0.221],[0.399,0.144],[0.436,0.087],[0.476,0.055],[0.507,0.074],[0.553,0.134],[0.603,0.211],[0.66,0.274],[0.727,0.314],[0.804,0.38],[0.844,0.355],[0.845,0.272],[0.854,0.165],[0.895,0.097],[0.946,0.061],[1.0,0.07]]},"method":"X-ray","resolution":2.8,"rna_type":"Ribosomal RNA","rna_group":"Protein synthesis","num_chains":2,"total_rna_len":42,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":95,"pocket_motifs":["internal loop","stem"],"rmsd":2.94,"host_chain_rmsd":2.99,"pocket_rmsd":2.65,"lig_bsa":459.2,"ligand_burial":0.731,"tm_score":0.29,"rg_apo":17.97,"rg_holo":17.64,"rg_delta":-0.33,"bp_rewire_src":"dssr","bp_formed":1,"bp_broken":2,"bp_conserved":18,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":16,"maxd":4.8,"water":0,"hbonds":8,"mw":449.5,"logp":-3.98,"thumb_img":true,"thumb_v":1785389618,"apo_alts":[],"n_apo_copies":0},{"id":"2ET4_NMY_A_C_50_pocket","title":"2ET4 (NMY) vs 3BNL (apo)","struct_title":"Complex Between Neomycin B and the 16S-RRNA A-Site","holo_pdb":"2ET4","ligand":"NMY","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"50","apo_pdb":"3BNL","apo_chain":"B","holo_len":21,"apo_len":22,"pocket_size":18,"thumb":{"holo":[[0.054,0.14],[0.11,0.221],[0.186,0.265],[0.258,0.266],[0.308,0.194],[0.356,0.123],[0.401,0.041],[0.455,0.0],[0.497,0.019],[0.527,0.062],[0.564,0.14],[0.603,0.223],[0.647,0.29],[0.693,0.323],[0.844,0.39],[0.88,0.348],[0.822,0.211],[0.847,0.11],[0.887,0.035],[0.932,0.0],[0.991,0.021]],"apo":[[0.0,0.047],[0.052,0.12],[0.113,0.196],[0.174,0.245],[0.234,0.243],[0.299,0.215],[0.354,0.149],[0.398,0.079],[0.434,0.039],[0.475,0.03],[0.511,0.07],[0.557,0.145],[0.608,0.223],[0.664,0.273],[0.732,0.294],[0.878,0.374],[0.844,0.299],[0.843,0.207],[0.853,0.098],[0.894,0.039],[0.946,0.029],[1.0,0.055]]},"method":"X-ray","resolution":2.4,"rna_type":"Ribosomal RNA","rna_group":"Protein synthesis","num_chains":2,"total_rna_len":42,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":95,"pocket_motifs":["internal loop","stem"],"rmsd":2.41,"host_chain_rmsd":1.86,"pocket_rmsd":2.6,"lig_bsa":483.8,"ligand_burial":0.61,"tm_score":0.259,"rg_apo":18.21,"rg_holo":18.17,"rg_delta":-0.04,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":2,"bp_conserved":18,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":16,"maxd":4.9,"water":3,"hbonds":8,"mw":614.7,"logp":-8.9,"thumb_img":true,"thumb_v":1785389619,"apo_alts":[],"n_apo_copies":0},{"id":"2ET4_NMY_B_D_51_pocket","title":"2ET4 (NMY) vs 3BNL (apo)","struct_title":"Complex Between Neomycin B and the 16S-RRNA A-Site","holo_pdb":"2ET4","ligand":"NMY","holo_chain":"B","holo_rna_chain":"B","lig_auth_chain":"B","nearest_rna_chain":"B","lig_resseq":"51","apo_pdb":"3BNL","apo_chain":"A","holo_len":21,"apo_len":22,"pocket_size":18,"thumb":{"holo":[[0.06,0.156],[0.119,0.239],[0.186,0.289],[0.258,0.296],[0.318,0.24],[0.36,0.158],[0.406,0.076],[0.448,0.017],[0.488,0.0],[0.517,0.031],[0.56,0.096],[0.588,0.187],[0.622,0.273],[0.673,0.323],[0.798,0.418],[0.852,0.387],[0.823,0.26],[0.854,0.162],[0.89,0.079],[0.937,0.029],[0.995,0.039]],"apo":[[0.0,0.057],[0.05,0.121],[0.109,0.191],[0.17,0.253],[0.234,0.271],[0.299,0.256],[0.355,0.199],[0.398,0.123],[0.436,0.067],[0.476,0.038],[0.507,0.06],[0.553,0.122],[0.602,0.2],[0.659,0.263],[0.726,0.3],[0.802,0.365],[0.842,0.339],[0.843,0.254],[0.853,0.147],[0.895,0.08],[0.946,0.047],[1.0,0.059]]},"method":"X-ray","resolution":2.4,"rna_type":"Ribosomal RNA","rna_group":"Protein synthesis","num_chains":2,"total_rna_len":42,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":95,"pocket_motifs":["internal loop","stem"],"rmsd":2.43,"host_chain_rmsd":2.25,"pocket_rmsd":2.27,"lig_bsa":470.7,"ligand_burial":0.599,"tm_score":0.27,"rg_apo":17.97,"rg_holo":17.98,"rg_delta":0.01,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":2,"bp_conserved":18,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":16,"maxd":4.6,"water":5,"hbonds":8,"mw":614.7,"logp":-8.9,"thumb_img":true,"thumb_v":1785389618,"apo_alts":[],"n_apo_copies":0},{"id":"2ET5_RIO_A_C_54_pocket","title":"2ET5 (RIO) vs 3BNL (apo)","struct_title":"Complex Between Ribostamycin and the 16S-RRNA A-Site","holo_pdb":"2ET5","ligand":"RIO","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"54","apo_pdb":"3BNL","apo_chain":"A","holo_len":21,"apo_len":22,"pocket_size":18,"thumb":{"holo":[[0.06,0.13],[0.114,0.209],[0.188,0.26],[0.251,0.266],[0.304,0.201],[0.35,0.125],[0.402,0.045],[0.455,0.0],[0.495,0.003],[0.524,0.034],[0.558,0.103],[0.595,0.183],[0.63,0.265],[0.674,0.314],[0.827,0.388],[0.874,0.353],[0.817,0.22],[0.844,0.125],[0.885,0.039],[0.931,0.002],[0.985,0.021]],"apo":[[0.0,0.036],[0.05,0.105],[0.11,0.176],[0.171,0.235],[0.235,0.246],[0.3,0.225],[0.355,0.164],[0.398,0.09],[0.435,0.04],[0.476,0.018],[0.508,0.048],[0.554,0.115],[0.604,0.192],[0.661,0.252],[0.727,0.283],[0.803,0.343],[0.843,0.309],[0.843,0.22],[0.853,0.112],[0.894,0.049],[0.946,0.023],[1.0,0.041]]},"method":"X-ray","resolution":2.2,"rna_type":"Ribosomal RNA","rna_group":"Protein synthesis","num_chains":2,"total_rna_len":42,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":95,"pocket_motifs":["internal loop","stem"],"rmsd":2.63,"host_chain_rmsd":2.02,"pocket_rmsd":2.57,"lig_bsa":377.4,"ligand_burial":0.629,"tm_score":0.292,"rg_apo":17.97,"rg_holo":17.99,"rg_delta":0.02,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":2,"bp_conserved":18,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":16,"maxd":6.8,"water":4,"hbonds":7,"mw":454.5,"logp":-6.65,"thumb_img":true,"thumb_v":1785389618,"apo_alts":[],"n_apo_copies":0},{"id":"2ET5_RIO_B_E_51_pocket","title":"2ET5 (RIO) vs 3BNL (apo)","struct_title":"Complex Between Ribostamycin and the 16S-RRNA A-Site","holo_pdb":"2ET5","ligand":"RIO","holo_chain":"B","holo_rna_chain":"B","lig_auth_chain":"B","nearest_rna_chain":"B","lig_resseq":"51","apo_pdb":"3BNL","apo_chain":"A","holo_len":21,"apo_len":22,"pocket_size":17,"thumb":{"holo":[[0.065,0.129],[0.118,0.213],[0.188,0.266],[0.257,0.28],[0.308,0.219],[0.357,0.143],[0.409,0.062],[0.457,0.01],[0.495,0.0],[0.527,0.024],[0.557,0.09],[0.589,0.172],[0.618,0.265],[0.67,0.319],[0.799,0.405],[0.853,0.369],[0.825,0.245],[0.851,0.146],[0.888,0.057],[0.931,0.005],[0.988,0.005]],"apo":[[0.0,0.041],[0.05,0.105],[0.109,0.175],[0.17,0.237],[0.233,0.254],[0.299,0.239],[0.355,0.181],[0.398,0.105],[0.436,0.051],[0.476,0.022],[0.507,0.045],[0.553,0.109],[0.602,0.186],[0.659,0.249],[0.725,0.286],[0.801,0.35],[0.841,0.323],[0.843,0.237],[0.853,0.13],[0.894,0.064],[0.946,0.031],[1.0,0.044]]},"method":"X-ray","resolution":2.2,"rna_type":"Ribosomal RNA","rna_group":"Protein synthesis","num_chains":2,"total_rna_len":42,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":95,"pocket_motifs":["internal loop","stem"],"rmsd":2.55,"host_chain_rmsd":2.23,"pocket_rmsd":2.62,"lig_bsa":375.8,"ligand_burial":0.636,"tm_score":0.268,"rg_apo":17.97,"rg_holo":17.91,"rg_delta":-0.06,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":2,"bp_conserved":18,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":16,"maxd":5.1,"water":6,"hbonds":7,"mw":454.5,"logp":-6.65,"thumb_img":true,"thumb_v":1785389618,"apo_alts":[],"n_apo_copies":0},{"id":"2ET5_RIO_B_F_52_pocket","title":"2ET5 (RIO) vs 3BNL (apo)","struct_title":"Complex Between Ribostamycin and the 16S-RRNA A-Site","holo_pdb":"2ET5","ligand":"RIO","holo_chain":"B","holo_rna_chain":"B","lig_auth_chain":"B","nearest_rna_chain":"A","lig_resseq":"52","apo_pdb":"3BNL","apo_chain":"A","holo_len":21,"apo_len":22,"pocket_size":16,"thumb":{"holo":[[0.065,0.129],[0.118,0.213],[0.188,0.266],[0.257,0.28],[0.308,0.219],[0.357,0.143],[0.409,0.062],[0.457,0.01],[0.495,0.0],[0.527,0.024],[0.557,0.09],[0.589,0.172],[0.618,0.265],[0.67,0.319],[0.799,0.405],[0.853,0.369],[0.825,0.245],[0.851,0.146],[0.888,0.057],[0.931,0.005],[0.988,0.005]],"apo":[[0.0,0.041],[0.05,0.105],[0.109,0.175],[0.17,0.237],[0.233,0.254],[0.299,0.239],[0.355,0.181],[0.398,0.105],[0.436,0.051],[0.476,0.022],[0.507,0.045],[0.553,0.109],[0.602,0.186],[0.659,0.249],[0.725,0.286],[0.801,0.35],[0.841,0.323],[0.843,0.237],[0.853,0.13],[0.894,0.064],[0.946,0.031],[1.0,0.044]]},"method":"X-ray","resolution":2.2,"rna_type":"Ribosomal RNA","rna_group":"Protein synthesis","num_chains":2,"total_rna_len":42,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":95,"pocket_motifs":["internal loop","stem"],"rmsd":2.55,"host_chain_rmsd":2.23,"pocket_rmsd":2.09,"lig_bsa":407.3,"ligand_burial":0.678,"tm_score":0.268,"rg_apo":17.97,"rg_holo":17.91,"rg_delta":-0.06,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":2,"bp_conserved":18,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":16,"maxd":5.1,"water":7,"hbonds":7,"mw":454.5,"logp":-6.65,"thumb_img":true,"thumb_v":1785488729,"apo_alts":[],"n_apo_copies":0},{"id":"2ET5_RIO_B_G_53_pocket","title":"2ET5 (RIO) vs 3BNL (apo)","struct_title":"Complex Between Ribostamycin and the 16S-RRNA A-Site","holo_pdb":"2ET5","ligand":"RIO","holo_chain":"B","holo_rna_chain":"B","lig_auth_chain":"B","nearest_rna_chain":"B","lig_resseq":"53","apo_pdb":"3BNL","apo_chain":"A","holo_len":21,"apo_len":22,"pocket_size":16,"thumb":{"holo":[[0.065,0.129],[0.118,0.213],[0.188,0.266],[0.257,0.28],[0.308,0.219],[0.357,0.143],[0.409,0.062],[0.457,0.01],[0.495,0.0],[0.527,0.024],[0.557,0.09],[0.589,0.172],[0.618,0.265],[0.67,0.319],[0.799,0.405],[0.853,0.369],[0.825,0.245],[0.851,0.146],[0.888,0.057],[0.931,0.005],[0.988,0.005]],"apo":[[0.0,0.041],[0.05,0.105],[0.109,0.175],[0.17,0.237],[0.233,0.254],[0.299,0.239],[0.355,0.181],[0.398,0.105],[0.436,0.051],[0.476,0.022],[0.507,0.045],[0.553,0.109],[0.602,0.186],[0.659,0.249],[0.725,0.286],[0.801,0.35],[0.841,0.323],[0.843,0.237],[0.853,0.13],[0.894,0.064],[0.946,0.031],[1.0,0.044]]},"method":"X-ray","resolution":2.2,"rna_type":"Ribosomal RNA","rna_group":"Protein synthesis","num_chains":2,"total_rna_len":42,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":95,"pocket_motifs":["internal loop","stem"],"rmsd":2.55,"host_chain_rmsd":2.23,"pocket_rmsd":2.28,"lig_bsa":416.6,"ligand_burial":0.696,"tm_score":0.268,"rg_apo":17.97,"rg_holo":17.91,"rg_delta":-0.06,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":2,"bp_conserved":18,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":16,"maxd":5.1,"water":10,"hbonds":7,"mw":454.5,"logp":-6.65,"thumb_img":true,"thumb_v":1785389619,"apo_alts":[],"n_apo_copies":0},{"id":"2ET8_XXX_B_C_51_pocket","title":"2ET8 (XXX) vs 3BNL (apo)","struct_title":"Complex Between Neamine and the 16S-RRNA A-Site","holo_pdb":"2ET8","ligand":"XXX","holo_chain":"B","holo_rna_chain":"B","lig_auth_chain":"B","nearest_rna_chain":"B","lig_resseq":"51","apo_pdb":"3BNL","apo_chain":"A","holo_len":21,"apo_len":22,"pocket_size":17,"thumb":{"holo":[[0.045,0.171],[0.105,0.242],[0.177,0.272],[0.239,0.262],[0.313,0.241],[0.362,0.155],[0.403,0.078],[0.433,0.018],[0.47,0.0],[0.505,0.033],[0.547,0.101],[0.588,0.183],[0.625,0.271],[0.686,0.315],[0.816,0.402],[0.867,0.378],[0.827,0.249],[0.857,0.157],[0.904,0.08],[0.95,0.037],[1.0,0.038]],"apo":[[0.0,0.057],[0.05,0.121],[0.109,0.19],[0.17,0.252],[0.234,0.269],[0.299,0.253],[0.354,0.194],[0.397,0.119],[0.434,0.064],[0.474,0.036],[0.505,0.058],[0.551,0.121],[0.6,0.198],[0.657,0.26],[0.724,0.296],[0.8,0.36],[0.84,0.333],[0.841,0.248],[0.85,0.14],[0.891,0.075],[0.942,0.042],[0.996,0.054]]},"method":"X-ray","resolution":2.5,"rna_type":"Ribosomal RNA","rna_group":"Protein synthesis","num_chains":2,"total_rna_len":42,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":95,"pocket_motifs":["internal loop","stem"],"rmsd":2.48,"host_chain_rmsd":2.14,"pocket_rmsd":2.83,"lig_bsa":336.7,"ligand_burial":0.699,"tm_score":0.273,"rg_apo":17.97,"rg_holo":18.38,"rg_delta":0.41,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":2,"bp_conserved":18,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":16,"maxd":7.8,"water":2,"hbonds":6,"mw":322.4,"logp":-5.12,"thumb_img":true,"thumb_v":1785389619,"apo_alts":[],"n_apo_copies":0},{"id":"2F4S_XXX_B_C_501_pocket","title":"2F4S (XXX) vs 3BNL (apo)","struct_title":"A-site RNA in complex with neamine","holo_pdb":"2F4S","ligand":"XXX","holo_chain":"B","holo_rna_chain":"B","lig_auth_chain":"B","nearest_rna_chain":"A","lig_resseq":"501","apo_pdb":"3BNL","apo_chain":"A","holo_len":21,"apo_len":22,"pocket_size":15,"thumb":{"holo":[[0.045,0.169],[0.106,0.243],[0.176,0.273],[0.242,0.265],[0.312,0.238],[0.361,0.15],[0.401,0.079],[0.433,0.018],[0.47,0.0],[0.505,0.035],[0.547,0.101],[0.587,0.184],[0.624,0.27],[0.685,0.315],[0.815,0.403],[0.865,0.376],[0.826,0.248],[0.856,0.156],[0.9,0.08],[0.949,0.036],[1.0,0.039]],"apo":[[0.0,0.057],[0.05,0.121],[0.109,0.19],[0.17,0.252],[0.234,0.268],[0.299,0.252],[0.354,0.193],[0.396,0.118],[0.433,0.064],[0.473,0.036],[0.504,0.059],[0.55,0.122],[0.6,0.198],[0.657,0.26],[0.723,0.296],[0.799,0.36],[0.839,0.332],[0.84,0.247],[0.849,0.14],[0.89,0.074],[0.941,0.042],[0.995,0.055]]},"method":"X-ray","resolution":2.8,"rna_type":"Ribosomal RNA","rna_group":"Protein synthesis","num_chains":2,"total_rna_len":42,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":95,"pocket_motifs":["internal loop","stem"],"rmsd":2.68,"host_chain_rmsd":2.13,"pocket_rmsd":2.8,"lig_bsa":338.7,"ligand_burial":0.699,"tm_score":0.289,"rg_apo":17.97,"rg_holo":18.35,"rg_delta":0.38,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":3,"bp_conserved":17,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":16,"maxd":7.7,"water":2,"hbonds":7,"mw":322.4,"logp":-5.12,"thumb_img":true,"thumb_v":1785488730,"apo_alts":[],"n_apo_copies":0},{"id":"2F4T_AB9_B_C_1_pocket","title":"2F4T (AB9) vs 3BNL (apo)","struct_title":"Asite RNA + designer antibiotic","holo_pdb":"2F4T","ligand":"AB9","holo_chain":"B","holo_rna_chain":"B","lig_auth_chain":"B","nearest_rna_chain":"B","lig_resseq":"1","apo_pdb":"3BNL","apo_chain":"A","holo_len":23,"apo_len":22,"pocket_size":17,"thumb":{"holo":[[0.0,0.094],[0.052,0.034],[0.089,0.174],[0.145,0.246],[0.209,0.296],[0.269,0.288],[0.336,0.262],[0.383,0.19],[0.423,0.116],[0.451,0.049],[0.479,0.014],[0.511,0.034],[0.556,0.102],[0.595,0.181],[0.639,0.27],[0.698,0.313],[0.823,0.401],[0.876,0.37],[0.835,0.252],[0.859,0.156],[0.891,0.069],[0.926,0.015],[0.985,0.0]],"apo":[[0.018,0.081],[0.07,0.14],[0.131,0.205],[0.193,0.265],[0.255,0.283],[0.318,0.268],[0.371,0.21],[0.41,0.134],[0.445,0.076],[0.485,0.043],[0.517,0.061],[0.565,0.118],[0.616,0.192],[0.674,0.253],[0.74,0.289],[0.817,0.352],[0.854,0.327],[0.852,0.245],[0.857,0.14],[0.896,0.072],[0.946,0.035],[1.0,0.042]]},"method":"X-ray","resolution":3.0,"rna_type":"Ribosomal RNA","rna_group":"Protein synthesis","num_chains":2,"total_rna_len":44,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":96,"pocket_motifs":["internal loop","stem"],"rmsd":2.51,"host_chain_rmsd":2.33,"pocket_rmsd":2.74,"lig_bsa":483.2,"ligand_burial":0.626,"tm_score":0.31,"rg_apo":18.84,"rg_holo":18.73,"rg_delta":-0.11,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":2,"bp_conserved":18,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":16,"maxd":5.7,"water":0,"hbonds":9,"mw":509.6,"logp":-6.68,"thumb_img":true,"thumb_v":1785389619,"apo_alts":[],"n_apo_copies":0},{"id":"2F4U_AB6_B_C_41_pocket","title":"2F4U (AB6) vs 3BNL (apo)","struct_title":"Asite RNA + designer antibiotic","holo_pdb":"2F4U","ligand":"AB6","holo_chain":"B","holo_rna_chain":"B","lig_auth_chain":"B","nearest_rna_chain":"B","lig_resseq":"41","apo_pdb":"3BNL","apo_chain":"A","holo_len":21,"apo_len":22,"pocket_size":17,"thumb":{"holo":[[0.044,0.157],[0.113,0.241],[0.185,0.273],[0.252,0.276],[0.319,0.26],[0.37,0.18],[0.415,0.106],[0.438,0.035],[0.474,0.0],[0.512,0.025],[0.55,0.095],[0.591,0.176],[0.627,0.27],[0.688,0.32],[0.805,0.416],[0.866,0.398],[0.836,0.269],[0.867,0.182],[0.9,0.093],[0.94,0.034],[0.982,0.012]],"apo":[[0.0,0.067],[0.05,0.125],[0.11,0.193],[0.171,0.257],[0.235,0.28],[0.301,0.269],[0.357,0.214],[0.399,0.137],[0.436,0.077],[0.476,0.041],[0.507,0.056],[0.553,0.113],[0.603,0.189],[0.66,0.254],[0.727,0.297],[0.804,0.365],[0.844,0.344],[0.845,0.264],[0.854,0.157],[0.895,0.087],[0.946,0.047],[1.0,0.053]]},"method":"X-ray","resolution":2.6,"rna_type":"Ribosomal RNA","rna_group":"Protein synthesis","num_chains":2,"total_rna_len":42,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":95,"pocket_motifs":["internal loop","stem"],"rmsd":2.59,"host_chain_rmsd":2.18,"pocket_rmsd":3.23,"lig_bsa":454.3,"ligand_burial":0.575,"tm_score":0.258,"rg_apo":17.97,"rg_holo":18.14,"rg_delta":0.17,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":2,"bp_conserved":18,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":16,"maxd":8.3,"water":3,"hbonds":7,"mw":524.6,"logp":-6.25,"thumb_img":true,"thumb_v":1785389619,"apo_alts":[],"n_apo_copies":0},{"id":"2FCX_XXX_A_F_101_pocket","title":"2FCX (XXX) vs 1XP7 (apo)","struct_title":"HIV-1 DIS kissing-loop in complex with neamine","holo_pdb":"2FCX","ligand":"XXX","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"B","lig_resseq":"101","apo_pdb":"1XP7","apo_chain":"B","holo_len":23,"apo_len":23,"pocket_size":19,"thumb":{"holo":[[0.068,0.372],[0.132,0.401],[0.196,0.335],[0.283,0.235],[0.376,0.139],[0.465,0.067],[0.549,0.045],[0.769,0.024],[0.875,0.053],[0.986,0.176],[0.891,0.276],[0.791,0.374],[0.69,0.453],[0.616,0.497],[0.56,0.459],[0.528,0.367],[0.492,0.231],[0.434,0.108],[0.369,0.02],[0.283,0.012],[0.201,0.067],[0.105,0.17],[0.0,0.264]],"apo":[[0.103,0.385],[0.132,0.39],[0.19,0.33],[0.272,0.23],[0.355,0.129],[0.452,0.064],[0.565,0.075],[0.783,0.0],[0.888,0.059],[1.0,0.207],[0.905,0.281],[0.798,0.369],[0.701,0.444],[0.618,0.481],[0.562,0.457],[0.523,0.363],[0.484,0.233],[0.43,0.113],[0.362,0.028],[0.274,0.013],[0.176,0.069],[0.08,0.16],[0.006,0.264]]},"method":"X-ray","resolution":2.0,"rna_type":"Virus NA","rna_group":"Viral","num_chains":2,"total_rna_len":44,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["junction","hairpin loop","stem"],"rmsd":1.93,"host_chain_rmsd":0.94,"pocket_rmsd":0.94,"lig_bsa":310.8,"ligand_burial":0.666,"tm_score":0.502,"rg_apo":13.29,"rg_holo":13.22,"rg_delta":-0.07,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":0,"bp_conserved":20,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":20,"maxd":5.3,"water":3,"hbonds":8,"mw":322.4,"logp":-5.12,"thumb_img":true,"thumb_v":1785488730,"apo_alts":[],"n_apo_copies":0},{"id":"2FCX_XXX_B_H_201_pocket","title":"2FCX (XXX) vs 1XP7 (apo)","struct_title":"HIV-1 DIS kissing-loop in complex with neamine","holo_pdb":"2FCX","ligand":"XXX","holo_chain":"B","holo_rna_chain":"B","lig_auth_chain":"B","nearest_rna_chain":"B","lig_resseq":"201","apo_pdb":"1XP7","apo_chain":"B","holo_len":23,"apo_len":23,"pocket_size":19,"thumb":{"holo":[[0.085,0.432],[0.162,0.411],[0.227,0.335],[0.303,0.225],[0.385,0.118],[0.468,0.04],[0.546,0.025],[0.768,0.021],[0.865,0.07],[0.97,0.212],[0.881,0.312],[0.766,0.41],[0.662,0.474],[0.587,0.492],[0.539,0.438],[0.513,0.333],[0.471,0.196],[0.413,0.071],[0.338,0.003],[0.269,0.0],[0.194,0.071],[0.117,0.197],[0.04,0.316]],"apo":[[0.095,0.379],[0.126,0.393],[0.185,0.34],[0.269,0.243],[0.352,0.14],[0.448,0.069],[0.561,0.075],[0.781,0.002],[0.886,0.056],[1.0,0.211],[0.905,0.292],[0.798,0.381],[0.699,0.454],[0.615,0.485],[0.557,0.453],[0.517,0.353],[0.477,0.221],[0.424,0.103],[0.357,0.022],[0.269,0.015],[0.172,0.076],[0.075,0.17],[0.0,0.272]]},"method":"X-ray","resolution":2.0,"rna_type":"Virus NA","rna_group":"Viral","num_chains":2,"total_rna_len":44,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["junction","hairpin loop","stem"],"rmsd":2.06,"host_chain_rmsd":1.57,"pocket_rmsd":1.36,"lig_bsa":323.2,"ligand_burial":0.705,"tm_score":0.426,"rg_apo":13.29,"rg_holo":12.95,"rg_delta":-0.34,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":0,"bp_conserved":20,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":20,"maxd":4.7,"water":3,"hbonds":6,"mw":322.4,"logp":-5.12,"thumb_img":true,"thumb_v":1785444646,"apo_alts":[],"n_apo_copies":0},{"id":"2FCY_NMY_A_C_1001_pocket","title":"2FCY (NMY) vs 1XP7 (apo)","struct_title":"HIV-1 DIS kissing-loop in complex with Neomycin","holo_pdb":"2FCY","ligand":"NMY","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"B","lig_resseq":"1001","apo_pdb":"1XP7","apo_chain":"B","holo_len":23,"apo_len":23,"pocket_size":21,"thumb":{"holo":[[0.095,0.384],[0.141,0.41],[0.216,0.361],[0.298,0.266],[0.371,0.144],[0.452,0.061],[0.526,0.033],[0.753,0.007],[0.851,0.048],[0.967,0.186],[0.897,0.304],[0.807,0.422],[0.704,0.505],[0.622,0.501],[0.567,0.455],[0.528,0.348],[0.481,0.215],[0.408,0.096],[0.334,0.021],[0.262,0.027],[0.185,0.094],[0.097,0.195],[0.005,0.29]],"apo":[[0.099,0.395],[0.13,0.409],[0.187,0.356],[0.268,0.257],[0.349,0.151],[0.443,0.078],[0.557,0.079],[0.775,0.0],[0.882,0.051],[1.0,0.205],[0.907,0.289],[0.801,0.38],[0.705,0.456],[0.622,0.488],[0.564,0.457],[0.521,0.356],[0.478,0.225],[0.421,0.109],[0.351,0.031],[0.263,0.027],[0.166,0.092],[0.073,0.189],[0.0,0.292]]},"method":"X-ray","resolution":2.2,"rna_type":"Virus NA","rna_group":"Viral","num_chains":2,"total_rna_len":44,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["junction","hairpin loop","stem"],"rmsd":1.72,"host_chain_rmsd":1.25,"pocket_rmsd":1.21,"lig_bsa":470.5,"ligand_burial":0.612,"tm_score":0.392,"rg_apo":13.29,"rg_holo":13.18,"rg_delta":-0.11,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":0,"bp_conserved":20,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":20,"maxd":4.2,"water":8,"hbonds":8,"mw":614.7,"logp":-8.9,"thumb_img":true,"thumb_v":1785488730,"apo_alts":[],"n_apo_copies":0},{"id":"2FCY_NMY_B_H_2001_pocket","title":"2FCY (NMY) vs 1XP7 (apo)","struct_title":"HIV-1 DIS kissing-loop in complex with Neomycin","holo_pdb":"2FCY","ligand":"NMY","holo_chain":"B","holo_rna_chain":"B","lig_auth_chain":"B","nearest_rna_chain":"B","lig_resseq":"2001","apo_pdb":"1XP7","apo_chain":"B","holo_len":23,"apo_len":23,"pocket_size":20,"thumb":{"holo":[[0.091,0.413],[0.15,0.416],[0.21,0.339],[0.287,0.23],[0.372,0.117],[0.461,0.052],[0.536,0.036],[0.755,0.018],[0.866,0.054],[0.988,0.193],[0.903,0.3],[0.798,0.409],[0.691,0.479],[0.599,0.504],[0.542,0.457],[0.504,0.357],[0.469,0.222],[0.413,0.09],[0.345,0.007],[0.268,0.003],[0.182,0.068],[0.106,0.188],[0.029,0.309]],"apo":[[0.096,0.391],[0.127,0.399],[0.186,0.342],[0.269,0.242],[0.351,0.139],[0.446,0.07],[0.559,0.077],[0.779,0.0],[0.884,0.056],[1.0,0.207],[0.906,0.286],[0.799,0.375],[0.702,0.451],[0.618,0.486],[0.559,0.459],[0.518,0.362],[0.477,0.231],[0.422,0.112],[0.354,0.029],[0.266,0.019],[0.17,0.079],[0.074,0.173],[0.0,0.277]]},"method":"X-ray","resolution":2.2,"rna_type":"Virus NA","rna_group":"Viral","num_chains":2,"total_rna_len":44,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["junction","hairpin loop","stem"],"rmsd":1.75,"host_chain_rmsd":1.12,"pocket_rmsd":1.17,"lig_bsa":468.9,"ligand_burial":0.618,"tm_score":0.375,"rg_apo":13.29,"rg_holo":13.16,"rg_delta":-0.13,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":0,"bp_conserved":20,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":20,"maxd":3.7,"water":7,"hbonds":9,"mw":614.7,"logp":-8.9,"thumb_img":true,"thumb_v":1785444647,"apo_alts":[],"n_apo_copies":0},{"id":"2FCZ_RIO_A_F_1024_pocket","title":"2FCZ (RIO) vs 1XP7 (apo)","struct_title":"HIV-1 DIS kissing-loop in complex with ribostamycin","holo_pdb":"2FCZ","ligand":"RIO","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"1024","apo_pdb":"1XP7","apo_chain":"B","holo_len":23,"apo_len":23,"pocket_size":20,"thumb":{"holo":[[0.09,0.093],[0.15,0.091],[0.215,0.17],[0.294,0.281],[0.384,0.387],[0.467,0.453],[0.534,0.47],[0.765,0.488],[0.862,0.449],[0.977,0.312],[0.89,0.206],[0.789,0.104],[0.685,0.033],[0.595,0.0],[0.544,0.048],[0.502,0.147],[0.466,0.281],[0.411,0.411],[0.341,0.491],[0.265,0.501],[0.186,0.441],[0.113,0.32],[0.037,0.198]],"apo":[[0.096,0.114],[0.127,0.107],[0.186,0.166],[0.269,0.266],[0.352,0.369],[0.447,0.437],[0.56,0.428],[0.779,0.505],[0.885,0.448],[1.0,0.298],[0.906,0.22],[0.799,0.131],[0.701,0.055],[0.617,0.019],[0.558,0.045],[0.517,0.141],[0.476,0.272],[0.422,0.392],[0.354,0.476],[0.267,0.488],[0.17,0.429],[0.075,0.336],[0.0,0.231]]},"method":"X-ray","resolution":2.01,"rna_type":"Virus NA","rna_group":"Viral","num_chains":2,"total_rna_len":88,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["junction","hairpin loop","stem"],"rmsd":1.96,"host_chain_rmsd":1.2,"pocket_rmsd":1.16,"lig_bsa":387.5,"ligand_burial":0.677,"tm_score":0.391,"rg_apo":13.29,"rg_holo":13.03,"rg_delta":-0.26,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":0,"bp_conserved":20,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":20,"maxd":4.5,"water":7,"hbonds":9,"mw":454.5,"logp":-6.65,"thumb_img":true,"thumb_v":1785444648,"apo_alts":[],"n_apo_copies":0},{"id":"2FCZ_RIO_B_H_2024_pocket","title":"2FCZ (RIO) vs 1XP7 (apo)","struct_title":"HIV-1 DIS kissing-loop in complex with ribostamycin","holo_pdb":"2FCZ","ligand":"RIO","holo_chain":"B","holo_rna_chain":"B","lig_auth_chain":"B","nearest_rna_chain":"A","lig_resseq":"2024","apo_pdb":"1XP7","apo_chain":"B","holo_len":23,"apo_len":23,"pocket_size":20,"thumb":{"holo":[[0.096,0.376],[0.143,0.406],[0.223,0.36],[0.307,0.269],[0.379,0.145],[0.46,0.06],[0.533,0.023],[0.745,0.01],[0.847,0.055],[0.964,0.186],[0.879,0.302],[0.789,0.409],[0.689,0.498],[0.61,0.5],[0.563,0.45],[0.53,0.345],[0.487,0.206],[0.416,0.089],[0.342,0.023],[0.269,0.028],[0.193,0.088],[0.102,0.191],[0.006,0.282]],"apo":[[0.099,0.388],[0.129,0.403],[0.187,0.351],[0.268,0.253],[0.35,0.148],[0.445,0.075],[0.559,0.077],[0.777,0.0],[0.884,0.052],[1.0,0.206],[0.906,0.29],[0.8,0.381],[0.703,0.455],[0.62,0.486],[0.562,0.454],[0.521,0.353],[0.479,0.221],[0.423,0.105],[0.354,0.027],[0.265,0.022],[0.168,0.087],[0.073,0.183],[0.0,0.286]]},"method":"X-ray","resolution":2.01,"rna_type":"Virus NA","rna_group":"Viral","num_chains":2,"total_rna_len":88,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["junction","hairpin loop","stem"],"rmsd":1.95,"host_chain_rmsd":1.41,"pocket_rmsd":1.32,"lig_bsa":376.4,"ligand_burial":0.638,"tm_score":0.345,"rg_apo":13.29,"rg_holo":13.02,"rg_delta":-0.27,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":0,"bp_conserved":20,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":20,"maxd":4.2,"water":10,"hbonds":8,"mw":454.5,"logp":-6.65,"thumb_img":true,"thumb_v":1785488730,"apo_alts":[],"n_apo_copies":0},{"id":"2FCZ_RIO_C_J_3024_pocket","title":"2FCZ (RIO) vs 1XP7 (apo)","struct_title":"HIV-1 DIS kissing-loop in complex with ribostamycin","holo_pdb":"2FCZ","ligand":"RIO","holo_chain":"C","holo_rna_chain":"C","lig_auth_chain":"C","nearest_rna_chain":"C","lig_resseq":"3024","apo_pdb":"1XP7","apo_chain":"B","holo_len":23,"apo_len":23,"pocket_size":20,"thumb":{"holo":[[0.073,0.132],[0.14,0.102],[0.207,0.159],[0.286,0.263],[0.379,0.364],[0.461,0.438],[0.536,0.468],[0.747,0.491],[0.851,0.454],[0.968,0.332],[0.882,0.224],[0.79,0.114],[0.694,0.028],[0.614,0.0],[0.56,0.049],[0.532,0.142],[0.492,0.282],[0.426,0.396],[0.355,0.474],[0.277,0.487],[0.195,0.434],[0.107,0.327],[0.009,0.235]],"apo":[[0.099,0.114],[0.128,0.107],[0.186,0.165],[0.267,0.266],[0.35,0.37],[0.446,0.437],[0.56,0.429],[0.779,0.507],[0.885,0.45],[1.0,0.301],[0.905,0.223],[0.799,0.133],[0.702,0.057],[0.619,0.021],[0.561,0.047],[0.521,0.143],[0.48,0.274],[0.425,0.393],[0.356,0.476],[0.267,0.488],[0.169,0.429],[0.074,0.335],[0.0,0.23]]},"method":"X-ray","resolution":2.01,"rna_type":"Virus NA","rna_group":"Viral","num_chains":2,"total_rna_len":88,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["junction","hairpin loop","stem"],"rmsd":2.16,"host_chain_rmsd":1.22,"pocket_rmsd":1.22,"lig_bsa":380.3,"ligand_burial":0.663,"tm_score":0.381,"rg_apo":13.29,"rg_holo":13.06,"rg_delta":-0.23,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":0,"bp_conserved":20,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":20,"maxd":5.6,"water":9,"hbonds":9,"mw":454.5,"logp":-6.65,"thumb_img":true,"thumb_v":1785444649,"apo_alts":[],"n_apo_copies":0},{"id":"2FCZ_RIO_D_L_4024_pocket","title":"2FCZ (RIO) vs 1XP7 (apo)","struct_title":"HIV-1 DIS kissing-loop in complex with ribostamycin","holo_pdb":"2FCZ","ligand":"RIO","holo_chain":"D","holo_rna_chain":"D","lig_auth_chain":"D","nearest_rna_chain":"C","lig_resseq":"4024","apo_pdb":"1XP7","apo_chain":"B","holo_len":23,"apo_len":23,"pocket_size":20,"thumb":{"holo":[[0.076,0.063],[0.159,0.085],[0.229,0.156],[0.306,0.26],[0.393,0.37],[0.474,0.447],[0.548,0.478],[0.766,0.47],[0.858,0.421],[0.963,0.282],[0.869,0.179],[0.76,0.081],[0.655,0.013],[0.581,0.0],[0.536,0.057],[0.512,0.162],[0.476,0.306],[0.416,0.424],[0.351,0.495],[0.277,0.489],[0.205,0.425],[0.123,0.299],[0.04,0.179]],"apo":[[0.094,0.119],[0.125,0.104],[0.185,0.154],[0.269,0.25],[0.353,0.353],[0.45,0.423],[0.563,0.418],[0.783,0.489],[0.888,0.434],[1.0,0.277],[0.905,0.196],[0.796,0.108],[0.697,0.036],[0.613,0.008],[0.555,0.041],[0.516,0.143],[0.477,0.276],[0.425,0.393],[0.359,0.473],[0.271,0.48],[0.173,0.418],[0.076,0.325],[0.0,0.224]]},"method":"X-ray","resolution":2.01,"rna_type":"Virus NA","rna_group":"Viral","num_chains":2,"total_rna_len":88,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["junction","hairpin loop","stem"],"rmsd":2.27,"host_chain_rmsd":1.72,"pocket_rmsd":1.65,"lig_bsa":383.2,"ligand_burial":0.664,"tm_score":0.417,"rg_apo":13.29,"rg_holo":12.89,"rg_delta":-0.4,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":0,"bp_conserved":20,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":20,"maxd":5.1,"water":8,"hbonds":10,"mw":454.5,"logp":-6.65,"thumb_img":true,"thumb_v":1785488730,"apo_alts":[],"n_apo_copies":0},{"id":"2FD0_LIV_A_C_1001_pocket","title":"2FD0 (LIV) vs 1XP7 (apo)","struct_title":"HIV-1 DIS kissing-loop in complex with lividomycin","holo_pdb":"2FD0","ligand":"LIV","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"1001","apo_pdb":"1XP7","apo_chain":"B","holo_len":23,"apo_len":23,"pocket_size":22,"thumb":{"holo":[[0.094,0.386],[0.141,0.409],[0.211,0.357],[0.291,0.257],[0.366,0.138],[0.453,0.06],[0.53,0.035],[0.751,0.011],[0.86,0.049],[0.985,0.187],[0.909,0.302],[0.823,0.411],[0.715,0.499],[0.631,0.5],[0.574,0.462],[0.532,0.356],[0.482,0.225],[0.413,0.103],[0.339,0.027],[0.257,0.031],[0.179,0.092],[0.088,0.195],[0.0,0.295]],"apo":[[0.105,0.4],[0.135,0.411],[0.192,0.355],[0.271,0.255],[0.351,0.15],[0.445,0.078],[0.559,0.08],[0.775,0.0],[0.882,0.052],[1.0,0.202],[0.908,0.284],[0.803,0.376],[0.708,0.453],[0.625,0.487],[0.567,0.459],[0.525,0.361],[0.481,0.231],[0.424,0.114],[0.354,0.035],[0.265,0.029],[0.169,0.092],[0.076,0.189],[0.005,0.293]]},"method":"X-ray","resolution":1.8,"rna_type":"Virus NA","rna_group":"Viral","num_chains":2,"total_rna_len":44,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["junction","hairpin loop","stem"],"rmsd":1.71,"host_chain_rmsd":1.05,"pocket_rmsd":1.06,"lig_bsa":541.3,"ligand_burial":0.565,"tm_score":0.413,"rg_apo":13.29,"rg_holo":13.37,"rg_delta":0.08,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":0,"bp_conserved":20,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":20,"maxd":4.2,"water":7,"hbonds":7,"mw":761.8,"logp":-10.01,"thumb_img":true,"thumb_v":1785444650,"apo_alts":[],"n_apo_copies":0},{"id":"2FD0_LIV_B_F_2001_pocket","title":"2FD0 (LIV) vs 1XP7 (apo)","struct_title":"HIV-1 DIS kissing-loop in complex with lividomycin","holo_pdb":"2FD0","ligand":"LIV","holo_chain":"B","holo_rna_chain":"B","lig_auth_chain":"B","nearest_rna_chain":"B","lig_resseq":"2001","apo_pdb":"1XP7","apo_chain":"B","holo_len":23,"apo_len":23,"pocket_size":21,"thumb":{"holo":[[0.089,0.417],[0.147,0.42],[0.203,0.344],[0.278,0.234],[0.367,0.117],[0.454,0.054],[0.535,0.037],[0.76,0.024],[0.872,0.053],[0.996,0.195],[0.914,0.302],[0.812,0.409],[0.703,0.483],[0.609,0.507],[0.548,0.461],[0.507,0.356],[0.466,0.225],[0.409,0.093],[0.339,0.011],[0.259,0.007],[0.171,0.065],[0.099,0.191],[0.026,0.319]],"apo":[[0.097,0.397],[0.128,0.405],[0.187,0.347],[0.268,0.246],[0.35,0.142],[0.445,0.073],[0.558,0.079],[0.777,0.0],[0.883,0.056],[1.0,0.205],[0.907,0.285],[0.801,0.375],[0.704,0.452],[0.62,0.488],[0.561,0.461],[0.519,0.365],[0.477,0.233],[0.421,0.115],[0.352,0.033],[0.265,0.023],[0.168,0.083],[0.074,0.178],[0.0,0.283]]},"method":"X-ray","resolution":1.8,"rna_type":"Virus NA","rna_group":"Viral","num_chains":2,"total_rna_len":44,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["junction","hairpin loop","stem"],"rmsd":1.82,"host_chain_rmsd":1.07,"pocket_rmsd":1.08,"lig_bsa":587.3,"ligand_burial":0.622,"tm_score":0.389,"rg_apo":13.29,"rg_holo":13.3,"rg_delta":0.01,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":0,"bp_conserved":20,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":20,"maxd":3.9,"water":10,"hbonds":10,"mw":761.8,"logp":-10.01,"thumb_img":true,"thumb_v":1785444651,"apo_alts":[],"n_apo_copies":0},{"id":"2G5K_AM2_A_C_102_pocket","title":"2G5K (AM2) vs 2O3Y (apo)","struct_title":"Crystal Structure of the Homo sapiens Cytoplasmic Ribosomal Decoding Site complexed with Apramycin","holo_pdb":"2G5K","ligand":"AM2","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"B","lig_resseq":"102","apo_pdb":"2O3Y","apo_chain":"A","holo_len":22,"apo_len":22,"pocket_size":18,"thumb":{"holo":[[0.025,0.295],[0.027,0.241],[0.082,0.177],[0.137,0.104],[0.206,0.058],[0.284,0.03],[0.341,0.062],[0.384,0.126],[0.411,0.22],[0.434,0.303],[0.462,0.361],[0.513,0.374],[0.566,0.326],[0.631,0.258],[0.7,0.203],[0.673,0.151],[0.771,0.022],[0.779,0.045],[0.813,0.086],[0.87,0.145],[0.93,0.218],[0.981,0.278]],"apo":[[0.0,0.322],[0.048,0.261],[0.092,0.184],[0.141,0.096],[0.198,0.03],[0.272,0.0],[0.324,0.047],[0.367,0.12],[0.409,0.205],[0.443,0.286],[0.479,0.356],[0.527,0.371],[0.576,0.333],[0.629,0.267],[0.692,0.211],[0.673,0.159],[0.742,0.026],[0.784,0.06],[0.816,0.096],[0.871,0.15],[0.936,0.222],[1.0,0.282]]},"method":"X-ray","resolution":2.8,"rna_type":"Ribosomal RNA","rna_group":"Protein synthesis","num_chains":2,"total_rna_len":44,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["internal loop","stem","single strand"],"rmsd":2.55,"host_chain_rmsd":1.72,"pocket_rmsd":3.49,"lig_bsa":457.2,"ligand_burial":0.629,"tm_score":0.277,"rg_apo":18.55,"rg_holo":18.34,"rg_delta":-0.21,"bp_rewire_src":"dssr","bp_formed":1,"bp_broken":2,"bp_conserved":17,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":14,"maxd":10.2,"water":2,"hbonds":7,"mw":539.6,"logp":-6.95,"thumb_img":true,"thumb_v":1785488730,"apo_alts":[{"pdb":"2FQN","rmsd":1.78,"host_chain_rmsd":1.78,"apo_chain":"A","apo_len":22,"identity":100,"global_identity":100,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.288,"rg_delta":-0.18,"pocket_rmsd":3.59,"maxd":10.8,"bp_formed":1,"bp_broken":2,"bp_conserved":17}],"n_apo_copies":0},{"id":"2G5K_AM2_B_F_101_pocket","title":"2G5K (AM2) vs 2O3Y (apo)","struct_title":"Crystal Structure of the Homo sapiens Cytoplasmic Ribosomal Decoding Site complexed with Apramycin","holo_pdb":"2G5K","ligand":"AM2","holo_chain":"B","holo_rna_chain":"B","lig_auth_chain":"B","nearest_rna_chain":"A","lig_resseq":"101","apo_pdb":"2O3Y","apo_chain":"A","holo_len":22,"apo_len":22,"pocket_size":18,"thumb":{"holo":[[0.025,0.295],[0.027,0.241],[0.082,0.177],[0.137,0.104],[0.206,0.057],[0.284,0.03],[0.341,0.062],[0.384,0.126],[0.411,0.22],[0.434,0.303],[0.462,0.361],[0.513,0.374],[0.566,0.326],[0.631,0.258],[0.7,0.203],[0.673,0.151],[0.771,0.022],[0.779,0.045],[0.813,0.086],[0.87,0.145],[0.93,0.218],[0.981,0.278]],"apo":[[0.0,0.322],[0.048,0.261],[0.092,0.184],[0.141,0.095],[0.198,0.03],[0.272,0.0],[0.324,0.047],[0.367,0.12],[0.409,0.205],[0.443,0.286],[0.479,0.356],[0.527,0.371],[0.576,0.333],[0.629,0.267],[0.692,0.211],[0.673,0.159],[0.742,0.026],[0.784,0.06],[0.816,0.096],[0.871,0.15],[0.936,0.222],[1.0,0.282]]},"method":"X-ray","resolution":2.8,"rna_type":"Ribosomal RNA","rna_group":"Protein synthesis","num_chains":2,"total_rna_len":44,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["internal loop","stem","single strand"],"rmsd":2.56,"host_chain_rmsd":1.72,"pocket_rmsd":3.49,"lig_bsa":462.8,"ligand_burial":0.619,"tm_score":0.276,"rg_apo":18.55,"rg_holo":18.34,"rg_delta":-0.21,"bp_rewire_src":"dssr","bp_formed":1,"bp_broken":2,"bp_conserved":17,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":14,"maxd":10.3,"water":2,"hbonds":7,"mw":539.6,"logp":-6.95,"thumb_img":true,"thumb_v":1785488730,"apo_alts":[{"pdb":"2FQN","rmsd":1.78,"host_chain_rmsd":1.78,"apo_chain":"A","apo_len":22,"identity":100,"global_identity":100,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.287,"rg_delta":-0.18,"pocket_rmsd":3.59,"maxd":10.8,"bp_formed":1,"bp_broken":2,"bp_conserved":17}],"n_apo_copies":0},{"id":"2GIS_SAM_A_H_301_pocket","title":"2GIS (SAM) vs 3IQP (apo)","struct_title":"Structure of the S-adenosylmethionine riboswitch mRNA regulatory element","holo_pdb":"2GIS","ligand":"SAM","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"301","apo_pdb":"3IQP","apo_chain":"A","holo_len":94,"apo_len":94,"pocket_size":23,"thumb":{"holo":[[0.38,0.171],[0.42,0.109],[0.437,0.044],[0.429,0.021],[0.422,0.042],[0.41,0.093],[0.423,0.166],[0.459,0.247],[0.513,0.304],[0.407,0.31],[0.337,0.345],[0.283,0.402],[0.22,0.51],[0.255,0.638],[0.142,0.568],[0.107,0.592],[0.125,0.585],[0.193,0.605],[0.242,0.646],[0.345,0.633],[0.382,0.589],[0.412,0.527],[0.466,0.477],[0.476,0.364],[0.549,0.372],[0.64,0.398],[0.676,0.451],[0.653,0.498],[0.611,0.533],[0.537,0.553],[0.451,0.572],[0.397,0.625],[0.332,0.736],[0.336,0.745],[0.305,0.683],[0.348,0.594],[0.311,0.527],[0.234,0.497],[0.158,0.484],[0.107,0.483],[0.096,0.474],[0.144,0.454],[0.203,0.407],[0.259,0.345],[0.274,0.269],[0.256,0.19],[0.292,0.146],[0.221,0.1],[0.142,0.075],[0.083,0.066],[0.065,0.001],[0.052,0.084],[0.0,0.157],[0.045,0.18],[0.078,0.177],[0.149,0.18],[0.22,0.216],[0.278,0.265],[0.308,0.328],[0.299,0.41],[0.423,0.499],[0.498,0.476],[0.529,0.349],[0.5,0.313],[0.537,0.437],[0.619,0.419],[0.665,0.382],[0.687,0.338],[0.733,0.234],[0.775,0.192],[0.808,0.169],[0.842,0.196],[0.874,0.265],[0.916,0.344],[1.0,0.403],[0.928,0.439],[0.863,0.464],[0.814,0.41],[0.784,0.34],[0.753,0.266],[0.723,0.194],[0.695,0.16],[0.672,0.166],[0.638,0.207],[0.574,0.25],[0.501,0.275],[0.424,0.27],[0.355,0.229],[0.313,0.154],[0.302,0.079],[0.31,0.015],[0.331,0.003],[0.357,0.012],[0.347,0.049]],"apo":[[0.394,0.168],[0.428,0.106],[0.441,0.04],[0.432,0.022],[0.427,0.047],[0.415,0.096],[0.419,0.171],[0.459,0.246],[0.494,0.314],[0.389,0.299],[0.321,0.34],[0.274,0.394],[0.24,0.508],[0.176,0.565],[0.128,0.584],[0.107,0.599],[0.132,0.595],[0.198,0.612],[0.261,0.657],[0.352,0.636],[0.387,0.588],[0.412,0.525],[0.461,0.472],[0.476,0.367],[0.547,0.379],[0.643,0.413],[0.678,0.469],[0.664,0.505],[0.61,0.533],[0.536,0.553],[0.451,0.573],[0.404,0.63],[0.347,0.743],[0.348,0.735],[0.314,0.681],[0.355,0.593],[0.317,0.527],[0.243,0.503],[0.159,0.492],[0.102,0.492],[0.111,0.482],[0.144,0.462],[0.197,0.411],[0.25,0.35],[0.245,0.279],[0.319,0.224],[0.298,0.152],[0.234,0.103],[0.157,0.072],[0.104,0.061],[0.072,0.0],[0.063,0.073],[0.018,0.146],[0.055,0.168],[0.082,0.168],[0.144,0.176],[0.216,0.207],[0.266,0.263],[0.299,0.323],[0.296,0.408],[0.416,0.502],[0.489,0.478],[0.53,0.353],[0.491,0.325],[0.54,0.445],[0.623,0.421],[0.659,0.385],[0.683,0.338],[0.723,0.237],[0.767,0.191],[0.799,0.167],[0.836,0.193],[0.874,0.253],[0.913,0.314],[0.991,0.395],[0.924,0.431],[0.857,0.457],[0.809,0.402],[0.779,0.334],[0.747,0.257],[0.719,0.189],[0.685,0.159],[0.659,0.168],[0.627,0.202],[0.57,0.258],[0.499,0.282],[0.425,0.278],[0.362,0.231],[0.317,0.155],[0.303,0.079],[0.313,0.017],[0.335,0.003],[0.364,0.01],[0.36,0.044]]},"method":"X-ray","resolution":2.9,"rna_type":"Enzyme cofactor riboswitch","rna_group":"Riboswitch","num_chains":1,"total_rna_len":94,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":99,"pocket_motifs":["junction","internal loop","stem"],"rmsd":1.29,"host_chain_rmsd":1.29,"pocket_rmsd":1.35,"lig_bsa":452.3,"ligand_burial":0.857,"tm_score":0.926,"rg_apo":20.97,"rg_holo":21.08,"rg_delta":0.11,"bp_rewire_src":"dssr","bp_formed":3,"bp_broken":4,"bp_conserved":41,"bp_formed_wc":0,"bp_broken_wc":1,"bp_conserved_wc":30,"maxd":7.1,"water":2,"hbonds":7,"mw":398.4,"logp":-3.26,"thumb_img":true,"thumb_v":1785389619,"apo_alts":[],"n_apo_copies":0},{"id":"2HOM_TPS_A_H_97_pocket","title":"2HOM (TPS) vs 8F4O (apo)","struct_title":"Crystal structure of an E. coli thi-box riboswitch bound to thiamine monophosphate","holo_pdb":"2HOM","ligand":"TPS","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"97","apo_pdb":"8F4O","apo_chain":"A","holo_len":80,"apo_len":72,"pocket_size":28,"thumb":{"holo":[[0.777,0.141],[0.767,0.222],[0.785,0.293],[0.806,0.345],[0.822,0.377],[0.811,0.381],[0.762,0.361],[0.689,0.335],[0.601,0.311],[0.529,0.338],[0.454,0.376],[0.413,0.449],[0.316,0.419],[0.239,0.441],[0.191,0.508],[0.173,0.589],[0.108,0.581],[0.006,0.678],[0.057,0.648],[0.147,0.65],[0.211,0.639],[0.269,0.628],[0.316,0.693],[0.307,0.685],[0.272,0.633],[0.238,0.555],[0.256,0.461],[0.311,0.394],[0.391,0.387],[0.497,0.382],[0.474,0.429],[0.382,0.461],[0.477,0.544],[0.526,0.532],[0.649,0.583],[0.565,0.502],[0.541,0.427],[0.549,0.346],[0.588,0.29],[0.658,0.252],[0.647,0.132],[0.589,0.138],[0.512,0.065],[0.514,0.19],[0.535,0.279],[0.486,0.275],[0.442,0.243],[0.386,0.189],[0.322,0.149],[0.265,0.217],[0.18,0.275],[0.213,0.166],[0.181,0.137],[0.151,0.144],[0.151,0.208],[0.148,0.287],[0.143,0.365],[0.113,0.463],[0.161,0.43],[0.223,0.384],[0.306,0.313],[0.246,0.333],[0.253,0.25],[0.26,0.174],[0.27,0.118],[0.309,0.114],[0.394,0.099],[0.461,0.001],[0.408,0.057],[0.447,0.085],[0.494,0.142],[0.547,0.199],[0.636,0.26],[0.749,0.235],[0.818,0.256],[0.876,0.285],[0.902,0.3],[0.898,0.294],[0.884,0.261],[1.0,0.303]],"apo":[[0.687,0.175],[0.768,0.252],[0.788,0.322],[0.826,0.377],[0.86,0.401],[0.845,0.391],[0.79,0.379],[0.716,0.352],[0.627,0.337],[0.553,0.375],[0.49,0.413],[0.45,0.481],[0.329,0.507],[0.318,0.766],[0.368,0.751],[0.343,0.723],[0.337,0.668],[0.324,0.577],[0.356,0.5],[0.425,0.458],[0.526,0.437],[0.513,0.483],[0.413,0.545],[0.495,0.576],[0.566,0.588],[0.636,0.589],[0.609,0.552],[0.577,0.476],[0.57,0.395],[0.604,0.329],[0.668,0.279],[0.681,0.184],[0.588,0.181],[0.504,0.145],[0.478,0.232],[0.552,0.321],[0.507,0.315],[0.463,0.282],[0.412,0.232],[0.354,0.184],[0.296,0.144],[0.233,0.139],[0.183,0.177],[0.085,0.126],[0.029,0.087],[0.0,0.071],[0.0,0.087],[0.102,0.13],[0.114,0.065],[0.103,0.017],[0.101,0.0],[0.115,0.025],[0.17,0.066],[0.259,0.097],[0.328,0.064],[0.423,0.096],[0.456,0.122],[0.51,0.18],[0.562,0.225],[0.652,0.291],[0.759,0.265],[0.829,0.269],[0.892,0.305],[0.924,0.315],[0.925,0.294]]},"method":"X-ray","resolution":2.89,"rna_type":"Enzyme cofactor riboswitch","rna_group":"Riboswitch","num_chains":1,"total_rna_len":80,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["junction","internal loop","hairpin loop","bulge","stem"],"rmsd":10.44,"host_chain_rmsd":10.44,"pocket_rmsd":9.59,"lig_bsa":418.3,"ligand_burial":0.771,"tm_score":0.489,"rg_apo":23.66,"rg_holo":19.16,"rg_delta":-4.5,"bp_rewire_src":"dssr","bp_formed":11,"bp_broken":3,"bp_conserved":25,"bp_formed_wc":4,"bp_broken_wc":2,"bp_conserved_wc":17,"maxd":32.4,"water":1,"hbonds":3,"mw":345.3,"logp":0.72,"thumb_img":true,"thumb_v":1785389619,"apo_alts":[],"n_apo_copies":2},{"id":"2HOO_BFT_A_I_95_pocket","title":"2HOO (BFT) vs 8F4O (apo)","struct_title":"Crystal structure of an E. coli thi-box riboswitch bound to benfotiamine","holo_pdb":"2HOO","ligand":"BFT","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"95","apo_pdb":"8F4O","apo_chain":"A","holo_len":83,"apo_len":72,"pocket_size":30,"thumb":{"holo":[[0.194,0.528],[0.209,0.456],[0.2,0.378],[0.187,0.323],[0.18,0.288],[0.194,0.288],[0.24,0.314],[0.303,0.343],[0.378,0.379],[0.454,0.372],[0.533,0.35],[0.577,0.288],[0.662,0.322],[0.742,0.311],[0.789,0.249],[0.807,0.17],[0.872,0.194],[0.986,0.117],[1.0,0.03],[0.979,0.069],[0.952,0.089],[0.891,0.116],[0.818,0.111],[0.769,0.115],[0.714,0.132],[0.678,0.051],[0.693,0.07],[0.725,0.124],[0.748,0.197],[0.726,0.284],[0.67,0.349],[0.591,0.347],[0.491,0.34],[0.517,0.296],[0.609,0.271],[0.529,0.186],[0.498,0.194],[0.408,0.12],[0.445,0.213],[0.458,0.288],[0.437,0.359],[0.389,0.404],[0.318,0.431],[0.308,0.535],[0.36,0.549],[0.434,0.613],[0.463,0.519],[0.439,0.427],[0.479,0.435],[0.515,0.472],[0.554,0.536],[0.607,0.587],[0.672,0.536],[0.748,0.531],[0.72,0.6],[0.74,0.619],[0.772,0.607],[0.79,0.541],[0.806,0.47],[0.819,0.385],[0.859,0.299],[0.813,0.329],[0.746,0.362],[0.665,0.447],[0.72,0.41],[0.7,0.486],[0.677,0.554],[0.66,0.612],[0.619,0.621],[0.534,0.608],[0.443,0.674],[0.516,0.657],[0.483,0.621],[0.451,0.553],[0.411,0.495],[0.337,0.423],[0.23,0.43],[0.169,0.398],[0.121,0.364],[0.091,0.349],[0.093,0.368],[0.098,0.41],[0.0,0.383]],"apo":[[0.278,0.499],[0.213,0.415],[0.205,0.346],[0.177,0.289],[0.148,0.262],[0.16,0.273],[0.21,0.293],[0.274,0.33],[0.356,0.357],[0.431,0.332],[0.496,0.305],[0.543,0.247],[0.661,0.241],[0.709,0.0],[0.66,0.006],[0.68,0.036],[0.677,0.089],[0.676,0.176],[0.635,0.243],[0.565,0.273],[0.467,0.277],[0.485,0.236],[0.588,0.193],[0.515,0.152],[0.45,0.13],[0.385,0.119],[0.406,0.157],[0.424,0.233],[0.419,0.31],[0.377,0.367],[0.31,0.404],[0.284,0.491],[0.37,0.508],[0.444,0.554],[0.481,0.476],[0.424,0.383],[0.466,0.395],[0.501,0.432],[0.541,0.486],[0.588,0.54],[0.637,0.586],[0.696,0.599],[0.748,0.572],[0.833,0.634],[0.88,0.679],[0.905,0.698],[0.908,0.682],[0.819,0.626],[0.799,0.686],[0.801,0.733],[0.8,0.749],[0.79,0.723],[0.745,0.678],[0.666,0.635],[0.597,0.656],[0.511,0.612],[0.484,0.583],[0.442,0.521],[0.4,0.471],[0.326,0.396],[0.222,0.404],[0.157,0.39],[0.103,0.347],[0.076,0.333],[0.072,0.352]]},"method":"X-ray","resolution":3.0,"rna_type":"Enzyme cofactor riboswitch","rna_group":"Riboswitch","num_chains":1,"total_rna_len":83,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["junction","internal loop","hairpin loop","bulge","stem"],"rmsd":10.83,"host_chain_rmsd":10.83,"pocket_rmsd":10.47,"lig_bsa":517.9,"ligand_burial":0.794,"tm_score":0.494,"rg_apo":23.79,"rg_holo":19.68,"rg_delta":-4.11,"bp_rewire_src":"dssr","bp_formed":12,"bp_broken":3,"bp_conserved":25,"bp_formed_wc":4,"bp_broken_wc":2,"bp_conserved_wc":17,"maxd":34.5,"water":1,"hbonds":6,"mw":468.5,"logp":2.16,"thumb_img":true,"thumb_v":1785389619,"apo_alts":[],"n_apo_copies":2},{"id":"2HOP_218_A_F_92_pocket","title":"2HOP (218) vs 8F4O (apo)","struct_title":"Crystal structure of an E. coli thi-box riboswitch bound to pyrithiamine","holo_pdb":"2HOP","ligand":"218","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"92","apo_pdb":"8F4O","apo_chain":"A","holo_len":76,"apo_len":72,"pocket_size":22,"thumb":{"holo":[[0.229,0.63],[0.242,0.56],[0.218,0.478],[0.19,0.41],[0.18,0.386],[0.203,0.384],[0.245,0.392],[0.313,0.415],[0.395,0.441],[0.47,0.418],[0.543,0.389],[0.587,0.309],[0.687,0.338],[0.755,0.313],[0.788,0.238],[0.818,0.153],[0.947,0.045],[0.883,0.071],[0.806,0.085],[0.725,0.098],[0.752,0.13],[0.633,0.09],[0.665,0.071],[0.715,0.129],[0.746,0.201],[0.733,0.298],[0.697,0.367],[0.612,0.373],[0.513,0.385],[0.532,0.34],[0.617,0.299],[0.523,0.219],[0.505,0.244],[0.416,0.175],[0.443,0.26],[0.459,0.336],[0.45,0.412],[0.409,0.473],[0.346,0.501],[0.353,0.611],[0.411,0.611],[0.498,0.687],[0.51,0.594],[0.464,0.485],[0.504,0.488],[0.558,0.511],[0.597,0.56],[0.648,0.639],[0.761,0.575],[0.847,0.53],[0.846,0.637],[0.864,0.609],[0.859,0.535],[0.864,0.467],[0.856,0.382],[0.875,0.272],[0.83,0.314],[0.767,0.364],[0.732,0.488],[0.74,0.411],[0.756,0.495],[0.753,0.576],[0.753,0.659],[0.664,0.715],[0.585,0.715],[0.545,0.661],[0.492,0.599],[0.445,0.555],[0.359,0.486],[0.252,0.517],[0.186,0.494],[0.133,0.47],[0.095,0.456],[0.109,0.481],[0.126,0.529],[0.0,0.508]],"apo":[[0.325,0.589],[0.244,0.516],[0.223,0.447],[0.185,0.393],[0.151,0.368],[0.166,0.377],[0.22,0.387],[0.292,0.411],[0.38,0.425],[0.452,0.387],[0.514,0.349],[0.551,0.282],[0.67,0.255],[0.676,0.0],[0.628,0.017],[0.653,0.045],[0.66,0.1],[0.674,0.189],[0.644,0.265],[0.577,0.307],[0.478,0.329],[0.49,0.283],[0.587,0.22],[0.506,0.189],[0.436,0.179],[0.368,0.179],[0.395,0.216],[0.427,0.29],[0.436,0.37],[0.403,0.434],[0.341,0.483],[0.33,0.578],[0.421,0.579],[0.505,0.615],[0.529,0.528],[0.454,0.441],[0.499,0.445],[0.541,0.475],[0.592,0.523],[0.65,0.569],[0.708,0.609],[0.77,0.613],[0.818,0.577],[0.915,0.625],[0.971,0.663],[1.0,0.68],[1.0,0.665],[0.899,0.626],[0.889,0.69],[0.9,0.735],[0.902,0.751],[0.888,0.725],[0.833,0.685],[0.745,0.656],[0.678,0.689],[0.584,0.658],[0.551,0.632],[0.497,0.576],[0.445,0.533],[0.357,0.471],[0.252,0.498],[0.183,0.496],[0.121,0.462],[0.09,0.455],[0.089,0.476]]},"method":"X-ray","resolution":3.3,"rna_type":"Enzyme cofactor riboswitch","rna_group":"Riboswitch","num_chains":1,"total_rna_len":76,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["junction","internal loop","hairpin loop","stem","single strand"],"rmsd":10.26,"host_chain_rmsd":10.26,"pocket_rmsd":11.14,"lig_bsa":311.5,"ligand_burial":0.67,"tm_score":0.509,"rg_apo":23.61,"rg_holo":19.37,"rg_delta":-4.24,"bp_rewire_src":"dssr","bp_formed":9,"bp_broken":3,"bp_conserved":25,"bp_formed_wc":3,"bp_broken_wc":3,"bp_conserved_wc":14,"maxd":33.0,"water":0,"hbonds":1,"mw":259.3,"logp":0.55,"thumb_img":true,"thumb_v":1785389619,"apo_alts":[],"n_apo_copies":2},{"id":"2JUK_G0B_A_B_23_pocket","title":"2JUK (G0B) vs 1PJY (apo)","struct_title":"guanidino neomycin B recognition of an HIV-1 RNA helix","holo_pdb":"2JUK","ligand":"G0B","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"23","apo_pdb":"1PJY","apo_chain":"A","holo_len":22,"apo_len":22,"pocket_size":16,"thumb":{"holo":[[0.204,0.489],[0.228,0.467],[0.242,0.388],[0.275,0.261],[0.365,0.128],[0.497,0.051],[0.622,0.038],[0.738,0.062],[0.884,0.149],[0.928,0.263],[0.857,0.266],[0.895,0.436],[0.819,0.471],[0.785,0.421],[0.729,0.296],[0.636,0.171],[0.522,0.079],[0.416,0.011],[0.304,0.026],[0.181,0.117],[0.078,0.234],[0.012,0.334]],"apo":[[0.179,0.496],[0.214,0.47],[0.259,0.382],[0.319,0.262],[0.398,0.129],[0.504,0.051],[0.627,0.0],[0.755,0.044],[0.871,0.15],[0.932,0.249],[1.0,0.352],[0.88,0.446],[0.765,0.454],[0.741,0.396],[0.715,0.279],[0.624,0.161],[0.518,0.067],[0.395,0.0],[0.282,0.034],[0.162,0.122],[0.078,0.239],[0.0,0.372]]},"method":"NMR","resolution":null,"rna_type":"Frameshifting element","rna_group":"Translation regulation","num_chains":1,"total_rna_len":22,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["hairpin loop","stem"],"rmsd":1.97,"host_chain_rmsd":1.97,"pocket_rmsd":2.18,"lig_bsa":423.7,"ligand_burial":0.476,"tm_score":0.285,"rg_apo":13.1,"rg_holo":12.88,"rg_delta":-0.22,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":0,"bp_conserved":10,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":9,"maxd":6.6,"water":0,"hbonds":11,"mw":872.9,"logp":-22.67,"thumb_img":true,"thumb_v":1785389619,"apo_alts":[],"n_apo_copies":0},{"id":"2KGP_MIX_A_B_26_pocket","title":"2KGP (MIX) vs 1QC8 (apo)","struct_title":"Structural basis for stabilization of the tau pre-mRNA splicing regulatory element by Novantrone (Mitoxantrone)","holo_pdb":"2KGP","ligand":"MIX","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"26","apo_pdb":"1QC8","apo_chain":"A","holo_len":25,"apo_len":25,"pocket_size":11,"thumb":{"holo":[[0.045,0.387],[0.103,0.247],[0.181,0.221],[0.239,0.158],[0.35,0.134],[0.448,0.165],[0.517,0.225],[0.61,0.305],[0.705,0.384],[0.826,0.404],[0.922,0.35],[1.0,0.274],[0.946,0.27],[0.822,0.203],[0.85,0.078],[0.874,0.121],[0.8,0.247],[0.696,0.341],[0.605,0.378],[0.529,0.419],[0.426,0.402],[0.331,0.356],[0.215,0.311],[0.137,0.288],[0.0,0.257]],"apo":[[0.093,0.348],[0.055,0.224],[0.162,0.161],[0.269,0.155],[0.369,0.138],[0.443,0.203],[0.5,0.29],[0.591,0.358],[0.689,0.435],[0.805,0.43],[0.892,0.35],[0.958,0.26],[0.886,0.208],[0.817,0.132],[0.799,0.0],[0.837,0.148],[0.791,0.25],[0.729,0.361],[0.638,0.438],[0.539,0.462],[0.449,0.434],[0.37,0.363],[0.282,0.27],[0.174,0.238],[0.041,0.268]]},"method":"NMR","resolution":null,"rna_type":"Alternative splicing element","rna_group":"Post-transcriptional","num_chains":1,"total_rna_len":25,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["bulge","stem"],"rmsd":2.87,"host_chain_rmsd":2.87,"pocket_rmsd":3.13,"lig_bsa":433.2,"ligand_burial":0.654,"tm_score":0.228,"rg_apo":14.15,"rg_holo":14.81,"rg_delta":0.66,"bp_rewire_src":"dssr","bp_formed":1,"bp_broken":2,"bp_conserved":8,"bp_formed_wc":1,"bp_broken_wc":0,"bp_conserved_wc":8,"maxd":4.3,"water":0,"hbonds":5,"mw":444.5,"logp":-0.14,"thumb_img":true,"thumb_v":1785389619,"apo_alts":[],"n_apo_copies":0},{"id":"2L8H_ARG_A_B_1_pocket","title":"2L8H (ARG) vs 8THV (apo)","struct_title":"Chemical probe bound to HIV TAR RNA","holo_pdb":"2L8H","ligand":"ARG","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"1","apo_pdb":"8THV","apo_chain":"A","holo_len":29,"apo_len":29,"pocket_size":14,"thumb":{"holo":[[0.81,0.496],[0.783,0.534],[0.741,0.509],[0.684,0.423],[0.615,0.31],[0.525,0.202],[0.43,0.11],[0.385,0.0],[0.519,0.013],[0.487,0.024],[0.435,0.11],[0.376,0.222],[0.304,0.343],[0.236,0.444],[0.142,0.443],[0.0,0.455],[0.103,0.449],[0.236,0.44],[0.341,0.449],[0.414,0.485],[0.471,0.449],[0.517,0.359],[0.569,0.232],[0.629,0.141],[0.69,0.115],[0.751,0.167],[0.813,0.269],[0.877,0.385],[0.942,0.468]],"apo":[[0.943,0.478],[0.885,0.524],[0.811,0.502],[0.727,0.427],[0.638,0.324],[0.544,0.265],[0.381,0.274],[0.547,0.118],[0.525,0.025],[0.461,0.036],[0.396,0.108],[0.327,0.218],[0.252,0.332],[0.097,0.387],[0.246,0.504],[0.196,0.424],[0.034,0.354],[0.164,0.365],[0.314,0.376],[0.288,0.436],[0.368,0.438],[0.447,0.374],[0.521,0.264],[0.584,0.151],[0.657,0.132],[0.737,0.162],[0.825,0.246],[0.912,0.356],[1.0,0.447]]},"method":"NMR","resolution":null,"rna_type":"HIV TAR","rna_group":"Transcription regulation","num_chains":1,"total_rna_len":29,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["hairpin loop","bulge","stem"],"rmsd":4.47,"host_chain_rmsd":4.47,"pocket_rmsd":4.58,"lig_bsa":272.5,"ligand_burial":0.845,"tm_score":0.227,"rg_apo":13.08,"rg_holo":12.55,"rg_delta":-0.53,"bp_rewire_src":"dssr","bp_formed":3,"bp_broken":3,"bp_conserved":10,"bp_formed_wc":0,"bp_broken_wc":1,"bp_conserved_wc":10,"maxd":10.2,"water":0,"hbonds":3,"mw":175.2,"logp":-3.16,"thumb_img":true,"thumb_v":1785389619,"apo_alts":[{"pdb":"1ANR","rmsd":6.19,"host_chain_rmsd":6.19,"apo_chain":"A","apo_len":29,"identity":100,"global_identity":100,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.17,"rg_delta":-1.75,"pocket_rmsd":6.14,"maxd":9.5,"bp_formed":3,"bp_broken":2,"bp_conserved":10},{"pdb":"7JU1","rmsd":3.95,"host_chain_rmsd":3.95,"apo_chain":"X","apo_len":29,"identity":100,"global_identity":100,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.209,"rg_delta":-1.18,"pocket_rmsd":4.36,"maxd":11.4,"bp_formed":3,"bp_broken":2,"bp_conserved":10},{"pdb":"8U3M","rmsd":4.55,"host_chain_rmsd":4.55,"apo_chain":"A","apo_len":31,"identity":94,"global_identity":94,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.25,"rg_delta":-1.03,"pocket_rmsd":4.64,"maxd":7.3,"bp_formed":7,"bp_broken":8,"bp_conserved":6}],"n_apo_copies":0},{"id":"2L8H_L8H_A_C_2_pocket","title":"2L8H (L8H) vs 8THV (apo)","struct_title":"Chemical probe bound to HIV TAR RNA","holo_pdb":"2L8H","ligand":"L8H","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"2","apo_pdb":"8THV","apo_chain":"A","holo_len":29,"apo_len":29,"pocket_size":12,"thumb":{"holo":[[0.81,0.496],[0.783,0.534],[0.741,0.509],[0.684,0.423],[0.615,0.31],[0.525,0.202],[0.43,0.11],[0.385,0.0],[0.519,0.013],[0.487,0.024],[0.435,0.11],[0.376,0.222],[0.304,0.343],[0.236,0.444],[0.142,0.443],[0.0,0.455],[0.103,0.449],[0.236,0.44],[0.341,0.449],[0.414,0.485],[0.471,0.449],[0.517,0.359],[0.569,0.232],[0.629,0.141],[0.69,0.115],[0.751,0.167],[0.813,0.269],[0.877,0.385],[0.942,0.468]],"apo":[[0.943,0.478],[0.885,0.524],[0.811,0.502],[0.727,0.427],[0.638,0.324],[0.544,0.265],[0.381,0.274],[0.547,0.118],[0.525,0.025],[0.461,0.036],[0.396,0.108],[0.327,0.218],[0.252,0.332],[0.097,0.387],[0.246,0.504],[0.196,0.424],[0.034,0.354],[0.164,0.365],[0.314,0.376],[0.288,0.436],[0.368,0.438],[0.447,0.374],[0.521,0.264],[0.584,0.151],[0.657,0.132],[0.737,0.162],[0.825,0.246],[0.912,0.356],[1.0,0.447]]},"method":"NMR","resolution":null,"rna_type":"HIV TAR","rna_group":"Transcription regulation","num_chains":1,"total_rna_len":29,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["hairpin loop","bulge","stem"],"rmsd":4.47,"host_chain_rmsd":4.47,"pocket_rmsd":5.39,"lig_bsa":244.8,"ligand_burial":0.714,"tm_score":0.227,"rg_apo":13.08,"rg_holo":12.55,"rg_delta":-0.53,"bp_rewire_src":"dssr","bp_formed":3,"bp_broken":3,"bp_conserved":10,"bp_formed_wc":0,"bp_broken_wc":1,"bp_conserved_wc":10,"maxd":10.2,"water":0,"hbonds":0,"mw":173.2,"logp":2.43,"thumb_img":true,"thumb_v":1785389619,"apo_alts":[{"pdb":"1ANR","rmsd":6.19,"host_chain_rmsd":6.19,"apo_chain":"A","apo_len":29,"identity":100,"global_identity":100,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.17,"rg_delta":-1.75,"pocket_rmsd":6.6,"maxd":9.5,"bp_formed":3,"bp_broken":2,"bp_conserved":10},{"pdb":"7JU1","rmsd":3.95,"host_chain_rmsd":3.95,"apo_chain":"X","apo_len":29,"identity":100,"global_identity":100,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.209,"rg_delta":-1.18,"pocket_rmsd":4.6,"maxd":11.4,"bp_formed":3,"bp_broken":2,"bp_conserved":10},{"pdb":"8U3M","rmsd":4.55,"host_chain_rmsd":4.55,"apo_chain":"A","apo_len":31,"identity":94,"global_identity":94,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.25,"rg_delta":-1.03,"pocket_rmsd":4.1,"maxd":7.3,"bp_formed":7,"bp_broken":8,"bp_conserved":6}],"n_apo_copies":0},{"id":"2L94_L94_A_B_46_pocket","title":"2L94 (L94) vs 1Z2J (apo)","struct_title":"Structure of the HIV-1 frameshift site RNA bound to a small molecule inhibitor of viral replication","holo_pdb":"2L94","ligand":"L94","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"46","apo_pdb":"1Z2J","apo_chain":"A","holo_len":45,"apo_len":45,"pocket_size":23,"thumb":{"holo":[[0.082,0.206],[0.089,0.229],[0.144,0.215],[0.207,0.183],[0.281,0.143],[0.354,0.11],[0.414,0.099],[0.455,0.122],[0.486,0.2],[0.524,0.287],[0.584,0.332],[0.644,0.347],[0.694,0.312],[0.727,0.249],[0.748,0.166],[0.767,0.084],[0.793,0.029],[0.824,0.014],[0.87,0.04],[0.918,0.104],[0.979,0.141],[0.988,0.244],[0.918,0.248],[0.857,0.205],[0.801,0.142],[0.753,0.077],[0.706,0.037],[0.672,0.049],[0.647,0.103],[0.623,0.179],[0.601,0.265],[0.567,0.337],[0.523,0.374],[0.475,0.343],[0.403,0.282],[0.348,0.29],[0.416,0.316],[0.394,0.231],[0.378,0.152],[0.355,0.074],[0.314,0.031],[0.264,0.028],[0.19,0.062],[0.122,0.107],[0.057,0.143]],"apo":[[0.059,0.164],[0.061,0.191],[0.09,0.186],[0.148,0.161],[0.225,0.134],[0.307,0.116],[0.376,0.123],[0.431,0.17],[0.481,0.249],[0.55,0.304],[0.618,0.345],[0.688,0.352],[0.737,0.317],[0.767,0.255],[0.79,0.168],[0.806,0.091],[0.826,0.025],[0.864,0.0],[0.918,0.024],[0.964,0.085],[1.0,0.149],[0.988,0.228],[0.934,0.218],[0.873,0.169],[0.815,0.105],[0.76,0.056],[0.713,0.046],[0.68,0.069],[0.664,0.123],[0.658,0.197],[0.649,0.281],[0.618,0.357],[0.564,0.394],[0.503,0.396],[0.439,0.368],[0.365,0.318],[0.334,0.307],[0.333,0.237],[0.337,0.153],[0.326,0.08],[0.286,0.031],[0.217,0.016],[0.136,0.029],[0.056,0.059],[0.0,0.085]]},"method":"NMR","resolution":null,"rna_type":"Frameshifting element","rna_group":"Translation regulation","num_chains":1,"total_rna_len":45,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["hairpin loop","bulge","stem"],"rmsd":3.32,"host_chain_rmsd":3.32,"pocket_rmsd":2.97,"lig_bsa":389.7,"ligand_burial":0.635,"tm_score":0.391,"rg_apo":20.7,"rg_holo":18.75,"rg_delta":-1.95,"bp_rewire_src":"dssr","bp_formed":1,"bp_broken":0,"bp_conserved":20,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":19,"maxd":5.9,"water":0,"hbonds":2,"mw":336.5,"logp":-5.67,"thumb_img":true,"thumb_v":1785389620,"apo_alts":[],"n_apo_copies":0},{"id":"2LWK_0EC_A_B_101_pocket","title":"2LWK (0EC) vs 1JO7 (apo)","struct_title":"Solution structure of small molecule-influenza RNA complex","holo_pdb":"2LWK","ligand":"0EC","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"101","apo_pdb":"1JO7","apo_chain":"A","holo_len":32,"apo_len":31,"pocket_size":16,"thumb":{"holo":[[0.946,0.349],[0.885,0.254],[0.834,0.155],[0.792,0.087],[0.756,0.054],[0.721,0.075],[0.689,0.15],[0.648,0.251],[0.59,0.35],[0.519,0.414],[0.437,0.467],[0.36,0.448],[0.295,0.387],[0.239,0.291],[0.186,0.189],[0.136,0.122],[0.066,0.035],[0.137,0.118],[0.227,0.0],[0.28,0.069],[0.328,0.099],[0.379,0.179],[0.452,0.278],[0.529,0.367],[0.606,0.415],[0.683,0.414],[0.754,0.362],[0.815,0.275],[0.864,0.171],[0.904,0.084],[0.936,0.049],[0.97,0.072]],"apo":[[0.879,0.384],[0.839,0.263],[0.807,0.138],[0.778,0.041],[0.735,0.039],[0.698,0.123],[0.661,0.222],[0.586,0.312],[0.516,0.389],[0.446,0.407],[0.385,0.373],[0.332,0.289],[0.276,0.186],[0.169,0.112],[0.096,0.168],[0.0,0.197],[0.128,0.252],[0.12,0.181],[0.209,0.135],[0.3,0.073],[0.388,0.095],[0.476,0.164],[0.53,0.258],[0.574,0.391],[0.665,0.378],[0.749,0.335],[0.817,0.247],[0.889,0.141],[0.969,0.084],[0.998,0.113],[1.0,0.191]]},"method":"NMR","resolution":null,"rna_type":"A-form double helix","rna_group":"Structural","num_chains":1,"total_rna_len":32,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":97,"pocket_motifs":["internal loop","hairpin loop","stem"],"rmsd":4.71,"host_chain_rmsd":4.71,"pocket_rmsd":4.01,"lig_bsa":245.8,"ligand_burial":0.552,"tm_score":0.231,"rg_apo":15.48,"rg_holo":15.34,"rg_delta":-0.14,"bp_rewire_src":"dssr","bp_formed":3,"bp_broken":2,"bp_conserved":11,"bp_formed_wc":1,"bp_broken_wc":0,"bp_conserved_wc":10,"maxd":10.1,"water":0,"hbonds":2,"mw":289.3,"logp":0.64,"thumb_img":true,"thumb_v":1785389619,"apo_alts":[],"n_apo_copies":0},{"id":"2NPY_S9L_C_F_14_pocket","title":"2NPY (S9L) vs 1ZFV (apo)","struct_title":"Crystal Structure of a junctioned hairpin ribozyme incorporating 9atom linker and 2'-deoxy 2'-amino U at A-1","holo_pdb":"2NPY","ligand":"S9L","holo_chain":"C","holo_rna_chain":"C","lig_auth_chain":"C","nearest_rna_chain":"C","lig_resseq":"14","apo_pdb":"1ZFV","apo_chain":"C","holo_len":17,"apo_len":17,"pocket_size":7,"thumb":{"holo":[[0.0,0.332],[0.004,0.282],[0.024,0.186],[0.074,0.082],[0.148,0.004],[0.238,0.001],[0.329,0.061],[0.426,0.092],[0.486,0.182],[0.544,0.277],[0.603,0.324],[0.664,0.333],[0.729,0.274],[0.804,0.189],[0.877,0.117],[0.94,0.072],[1.0,0.103]],"apo":[[0.012,0.335],[0.017,0.288],[0.038,0.19],[0.084,0.082],[0.153,0.008],[0.238,0.0],[0.33,0.059],[0.425,0.088],[0.486,0.173],[0.54,0.27],[0.595,0.318],[0.654,0.327],[0.722,0.272],[0.797,0.193],[0.872,0.124],[0.932,0.079],[0.994,0.105]]},"method":"X-ray","resolution":2.65,"rna_type":"Hairpin ribozyme","rna_group":"Catalytic (ribozyme)","num_chains":3,"total_rna_len":60,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["stem"],"rmsd":0.55,"host_chain_rmsd":0.53,"pocket_rmsd":0.54,"lig_bsa":158.8,"ligand_burial":0.404,"tm_score":0.566,"rg_apo":16.91,"rg_holo":17.2,"rg_delta":0.29,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":0,"bp_conserved":17,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":11,"maxd":1.1,"water":0,"hbonds":0,"mw":230.2,"logp":-0.88,"thumb_img":true,"thumb_v":1785451616,"apo_alts":[{"pdb":"1X9K","rmsd":0.68,"host_chain_rmsd":0.68,"apo_chain":"C","apo_len":17,"identity":100,"global_identity":100,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.514,"rg_delta":0.16,"pocket_rmsd":1.37,"maxd":3.2,"bp_formed":1,"bp_broken":0,"bp_conserved":16},{"pdb":"1ZFX","rmsd":0.47,"host_chain_rmsd":0.47,"apo_chain":"C","apo_len":17,"identity":100,"global_identity":100,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.611,"rg_delta":0.31,"pocket_rmsd":0.46,"maxd":0.8,"bp_formed":0,"bp_broken":0,"bp_conserved":17},{"pdb":"2BCZ","rmsd":0.3,"host_chain_rmsd":0.3,"apo_chain":"C","apo_len":17,"identity":100,"global_identity":100,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.749,"rg_delta":0.12,"pocket_rmsd":0.33,"maxd":0.6,"bp_formed":0,"bp_broken":0,"bp_conserved":17}],"n_apo_copies":0},{"id":"2NPZ_PDI_B_E_14_pocket","title":"2NPZ (PDI) vs 1ZFV (apo)","struct_title":"Crystal structure of junctioned hairpin ribozyme incorporating synthetic propyl linker","holo_pdb":"2NPZ","ligand":"PDI","holo_chain":"B","holo_rna_chain":"B","lig_auth_chain":"B","nearest_rna_chain":"B","lig_resseq":"14","apo_pdb":"1ZFV","apo_chain":"B","holo_len":12,"apo_len":12,"pocket_size":7,"thumb":{"holo":[[0.0,0.544],[0.025,0.422],[0.083,0.275],[0.178,0.139],[0.311,0.015],[0.46,0.005],[0.586,0.098],[0.745,0.183],[0.873,0.312],[0.94,0.37],[0.988,0.396],[0.991,0.313]],"apo":[[0.016,0.544],[0.022,0.435],[0.082,0.273],[0.182,0.124],[0.31,0.017],[0.461,0.0],[0.606,0.087],[0.735,0.18],[0.863,0.299],[0.942,0.376],[0.982,0.402],[1.0,0.323]]},"method":"X-ray","resolution":3.35,"rna_type":"Hairpin ribozyme","rna_group":"Catalytic (ribozyme)","num_chains":3,"total_rna_len":61,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":92,"pocket_motifs":[],"rmsd":1.27,"host_chain_rmsd":0.41,"pocket_rmsd":1.56,"lig_bsa":156.6,"ligand_burial":0.576,"tm_score":0.615,"rg_apo":13.29,"rg_holo":13.37,"rg_delta":0.08,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":1,"bp_conserved":16,"bp_formed_wc":0,"bp_broken_wc":1,"bp_conserved_wc":10,"maxd":3.5,"water":0,"hbonds":0,"mw":156.1,"logp":-0.52,"thumb_img":true,"thumb_v":1785451617,"apo_alts":[{"pdb":"1X9K","rmsd":1.87,"host_chain_rmsd":1.87,"apo_chain":"B","apo_len":13,"identity":100,"global_identity":54,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.399,"rg_delta":-0.86,"pocket_rmsd":1.56,"maxd":3.1,"bp_formed":0,"bp_broken":0,"bp_conserved":16},{"pdb":"1ZFX","rmsd":0.6,"host_chain_rmsd":0.6,"apo_chain":"B","apo_len":12,"identity":100,"global_identity":92,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.443,"rg_delta":0.3,"pocket_rmsd":0.87,"maxd":2.1,"bp_formed":0,"bp_broken":1,"bp_conserved":16},{"pdb":"2BCZ","rmsd":0.44,"host_chain_rmsd":0.44,"apo_chain":"B","apo_len":12,"identity":100,"global_identity":92,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.55,"rg_delta":0.22,"pocket_rmsd":0.84,"maxd":2.4,"bp_formed":0,"bp_broken":1,"bp_conserved":16}],"n_apo_copies":0},{"id":"2O3V_N33_A_C_50_pocket","title":"2O3V (N33) vs 2O3Y (apo)","struct_title":"Crystal Structure of the Homo sapiens Cytoplasmic Ribosomal Decoding Site complexed with paromamine derivative NB33","holo_pdb":"2O3V","ligand":"N33","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"50","apo_pdb":"2O3Y","apo_chain":"A","holo_len":22,"apo_len":22,"pocket_size":16,"thumb":{"holo":[[0.003,0.274],[0.053,0.205],[0.107,0.146],[0.161,0.104],[0.21,0.107],[0.269,0.146],[0.314,0.219],[0.357,0.313],[0.402,0.366],[0.446,0.384],[0.482,0.347],[0.521,0.278],[0.566,0.192],[0.613,0.109],[0.686,0.008],[0.657,0.081],[0.758,0.0],[0.788,0.095],[0.829,0.202],[0.879,0.27],[0.928,0.309],[0.979,0.324]],"apo":[[0.0,0.328],[0.048,0.223],[0.092,0.14],[0.14,0.089],[0.196,0.1],[0.271,0.127],[0.323,0.205],[0.366,0.291],[0.408,0.341],[0.443,0.359],[0.479,0.34],[0.527,0.276],[0.576,0.195],[0.629,0.108],[0.692,0.009],[0.673,0.076],[0.741,0.033],[0.783,0.113],[0.815,0.214],[0.87,0.277],[0.936,0.32],[1.0,0.314]]},"method":"X-ray","resolution":2.8,"rna_type":"Ribosomal RNA","rna_group":"Protein synthesis","num_chains":2,"total_rna_len":43,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["internal loop","stem"],"rmsd":2.28,"host_chain_rmsd":1.95,"pocket_rmsd":2.38,"lig_bsa":382.1,"ligand_burial":0.542,"tm_score":0.293,"rg_apo":18.55,"rg_holo":18.17,"rg_delta":-0.38,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":1,"bp_conserved":18,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":14,"maxd":5.2,"water":1,"hbonds":6,"mw":514.5,"logp":-7.32,"thumb_img":true,"thumb_v":1785389619,"apo_alts":[{"pdb":"2FQN","rmsd":1.91,"host_chain_rmsd":1.91,"apo_chain":"A","apo_len":22,"identity":100,"global_identity":100,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.256,"rg_delta":-0.35,"pocket_rmsd":1.97,"maxd":5.2,"bp_formed":0,"bp_broken":1,"bp_conserved":18}],"n_apo_copies":0},{"id":"2O3W_PAR_B_C_101_pocket","title":"2O3W (PAR) vs 2O3Y (apo)","struct_title":"Crystal Structure of the Homo sapiens Cytoplasmic Ribosomal Decoding Site in presence of paromomycin","holo_pdb":"2O3W","ligand":"PAR","holo_chain":"B","holo_rna_chain":"B","lig_auth_chain":"B","nearest_rna_chain":"B","lig_resseq":"101","apo_pdb":"2O3Y","apo_chain":"B","holo_len":21,"apo_len":21,"pocket_size":16,"thumb":{"holo":[[0.021,0.257],[0.065,0.162],[0.139,0.116],[0.211,0.105],[0.283,0.137],[0.336,0.225],[0.379,0.315],[0.414,0.358],[0.444,0.361],[0.48,0.323],[0.53,0.254],[0.582,0.169],[0.636,0.103],[0.695,0.069],[0.849,0.029],[0.858,0.0],[0.793,0.143],[0.838,0.238],[0.892,0.302],[0.946,0.335],[0.995,0.325]],"apo":[[0.0,0.26],[0.05,0.168],[0.119,0.114],[0.202,0.113],[0.282,0.139],[0.333,0.216],[0.375,0.308],[0.411,0.366],[0.443,0.359],[0.476,0.318],[0.526,0.245],[0.575,0.165],[0.635,0.102],[0.7,0.068],[0.857,0.046],[0.869,0.0],[0.807,0.137],[0.856,0.231],[0.914,0.299],[0.958,0.338],[1.0,0.332]]},"method":"X-ray","resolution":2.8,"rna_type":"Ribosomal RNA","rna_group":"Protein synthesis","num_chains":2,"total_rna_len":43,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["internal loop","stem"],"rmsd":1.17,"host_chain_rmsd":1.08,"pocket_rmsd":0.99,"lig_bsa":392.8,"ligand_burial":0.504,"tm_score":0.482,"rg_apo":18.93,"rg_holo":18.38,"rg_delta":-0.55,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":0,"bp_conserved":19,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":14,"maxd":2.4,"water":0,"hbonds":6,"mw":615.6,"logp":-8.86,"thumb_img":true,"thumb_v":1785389619,"apo_alts":[{"pdb":"2FQN","rmsd":0.92,"host_chain_rmsd":0.92,"apo_chain":"B","apo_len":21,"identity":100,"global_identity":100,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.481,"rg_delta":-0.34,"pocket_rmsd":0.89,"maxd":1.9,"bp_formed":0,"bp_broken":0,"bp_conserved":19}],"n_apo_copies":0},{"id":"2O3X_N30_B_C_1_pocket","title":"2O3X (N30) vs 3BNL (apo)","struct_title":"Crystal Structure of the Prokaryotic Ribosomal Decoding Site Complexed with Paromamine Derivative NB30","holo_pdb":"2O3X","ligand":"N30","holo_chain":"B","holo_rna_chain":"B","lig_auth_chain":"B","nearest_rna_chain":"B","lig_resseq":"1","apo_pdb":"3BNL","apo_chain":"A","holo_len":21,"apo_len":22,"pocket_size":17,"thumb":{"holo":[[0.047,0.168],[0.107,0.24],[0.178,0.284],[0.246,0.266],[0.31,0.233],[0.361,0.155],[0.406,0.079],[0.436,0.016],[0.476,0.0],[0.507,0.038],[0.549,0.105],[0.591,0.19],[0.627,0.275],[0.691,0.327],[0.815,0.409],[0.861,0.374],[0.827,0.252],[0.859,0.156],[0.903,0.079],[0.947,0.036],[1.0,0.035]],"apo":[[0.0,0.058],[0.05,0.123],[0.109,0.193],[0.171,0.254],[0.234,0.269],[0.3,0.252],[0.355,0.194],[0.398,0.118],[0.435,0.064],[0.475,0.037],[0.506,0.061],[0.552,0.126],[0.602,0.202],[0.659,0.264],[0.726,0.3],[0.802,0.363],[0.842,0.334],[0.843,0.248],[0.852,0.14],[0.893,0.075],[0.945,0.043],[0.999,0.057]]},"method":"X-ray","resolution":2.9,"rna_type":"Ribosomal RNA","rna_group":"Protein synthesis","num_chains":2,"total_rna_len":42,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":96,"pocket_motifs":["internal loop","stem"],"rmsd":2.67,"host_chain_rmsd":2.07,"pocket_rmsd":2.86,"lig_bsa":410.3,"ligand_burial":0.677,"tm_score":0.255,"rg_apo":17.97,"rg_holo":18.29,"rg_delta":0.32,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":3,"bp_conserved":17,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":16,"maxd":7.7,"water":0,"hbonds":8,"mw":454.5,"logp":-6.65,"thumb_img":true,"thumb_v":1785389619,"apo_alts":[],"n_apo_copies":0},{"id":"2OE5_AM2_B_E_101_pocket","title":"2OE5 (AM2) vs 2OE6 (apo)","struct_title":"1.5 A X-ray crystal structure of Apramycin complex with RNA fragment GGCGUCGCUAGUACCG/GGUACUAAAAGUCGCCC containing the human ribosomal decoding A site: RNA construct with 3'-overhang","holo_pdb":"2OE5","ligand":"AM2","holo_chain":"B","holo_rna_chain":"B","lig_auth_chain":"B","nearest_rna_chain":"B","lig_resseq":"101","apo_pdb":"2OE6","apo_chain":"B","holo_len":17,"apo_len":17,"pocket_size":20,"thumb":{"holo":[[0.072,0.016],[0.117,0.053],[0.166,0.139],[0.218,0.257],[0.287,0.348],[0.353,0.394],[0.422,0.384],[0.505,0.405],[0.447,0.259],[0.503,0.129],[0.563,0.063],[0.616,0.018],[0.695,0.0],[0.782,0.046],[0.863,0.13],[0.935,0.217],[1.0,0.295]],"apo":[[0.0,0.04],[0.048,0.01],[0.111,0.048],[0.164,0.136],[0.222,0.249],[0.291,0.346],[0.358,0.393],[0.432,0.389],[0.515,0.413],[0.457,0.265],[0.507,0.128],[0.563,0.059],[0.617,0.014],[0.693,0.0],[0.777,0.046],[0.853,0.136],[0.938,0.227]]},"method":"X-ray","resolution":1.51,"rna_type":"A-form double helix","rna_group":"Structural","num_chains":2,"total_rna_len":33,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":89,"pocket_motifs":["internal loop","stem"],"rmsd":0.53,"host_chain_rmsd":0.55,"pocket_rmsd":0.57,"lig_bsa":532.0,"ligand_burial":0.734,"tm_score":0.625,"rg_apo":14.22,"rg_holo":14.13,"rg_delta":-0.09,"bp_rewire_src":"dssr","bp_formed":2,"bp_broken":2,"bp_conserved":13,"bp_formed_wc":2,"bp_broken_wc":2,"bp_conserved_wc":10,"maxd":1.4,"water":11,"hbonds":11,"mw":539.6,"logp":-6.95,"thumb_img":true,"thumb_v":1785389620,"apo_alts":[],"n_apo_copies":0},{"id":"2OE8_AM2_B_C_101_pocket","title":"2OE8 (AM2) vs 2OE6 (apo)","struct_title":"1.8 A X-ray crystal structure of Apramycin complex with RNA fragment GGGCGUCGCUAGUACC/CGGUACUAAAAGUCGCC containing the human ribosomal decoding A site: RNA construct with 5'-overhang","holo_pdb":"2OE8","ligand":"AM2","holo_chain":"B","holo_rna_chain":"B","lig_auth_chain":"B","nearest_rna_chain":"B","lig_resseq":"101","apo_pdb":"2OE6","apo_chain":"B","holo_len":17,"apo_len":17,"pocket_size":20,"thumb":{"holo":[[0.012,0.045],[0.072,0.016],[0.129,0.063],[0.184,0.161],[0.245,0.286],[0.318,0.377],[0.383,0.414],[0.45,0.394],[0.527,0.4],[0.47,0.253],[0.531,0.097],[0.594,0.04],[0.652,0.006],[0.736,0.0],[0.826,0.064],[0.911,0.16],[1.0,0.245]],"apo":[[0.0,0.026],[0.054,0.01],[0.124,0.062],[0.182,0.161],[0.244,0.283],[0.316,0.381],[0.385,0.417],[0.459,0.401],[0.543,0.409],[0.483,0.26],[0.532,0.101],[0.594,0.039],[0.654,0.004],[0.737,0.001],[0.828,0.06],[0.909,0.158],[0.998,0.248]]},"method":"X-ray","resolution":1.8,"rna_type":"Ribosomal RNA","rna_group":"Protein synthesis","num_chains":2,"total_rna_len":33,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["internal loop","stem","single strand"],"rmsd":0.57,"host_chain_rmsd":0.5,"pocket_rmsd":0.53,"lig_bsa":566.6,"ligand_burial":0.773,"tm_score":0.701,"rg_apo":14.79,"rg_holo":14.67,"rg_delta":-0.12,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":0,"bp_conserved":15,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":12,"maxd":1.1,"water":14,"hbonds":11,"mw":539.6,"logp":-6.95,"thumb_img":true,"thumb_v":1785389620,"apo_alts":[],"n_apo_copies":0},{"id":"2PWT_LHA_A_C_51_pocket","title":"2PWT (LHA) vs 3BNL (apo)","struct_title":"Crystal structure of the bacterial ribosomal decoding site complexed with aminoglycoside containing the L-HABA group","holo_pdb":"2PWT","ligand":"LHA","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"B","lig_resseq":"51","apo_pdb":"3BNL","apo_chain":"A","holo_len":21,"apo_len":22,"pocket_size":21,"thumb":{"holo":[[0.063,0.178],[0.127,0.24],[0.198,0.276],[0.256,0.238],[0.305,0.191],[0.348,0.113],[0.399,0.037],[0.454,0.0],[0.5,0.009],[0.527,0.057],[0.56,0.132],[0.589,0.218],[0.628,0.289],[0.674,0.334],[0.81,0.41],[0.875,0.366],[0.821,0.227],[0.849,0.128],[0.882,0.049],[0.924,0.014],[0.974,0.029]],"apo":[[0.0,0.047],[0.05,0.121],[0.11,0.193],[0.171,0.248],[0.235,0.252],[0.3,0.225],[0.355,0.16],[0.398,0.089],[0.435,0.047],[0.476,0.033],[0.507,0.072],[0.554,0.145],[0.603,0.221],[0.661,0.277],[0.727,0.3],[0.803,0.354],[0.843,0.312],[0.844,0.219],[0.853,0.111],[0.894,0.054],[0.946,0.037],[1.0,0.063]]},"method":"X-ray","resolution":1.8,"rna_type":"Ribosomal RNA","rna_group":"Protein synthesis","num_chains":2,"total_rna_len":42,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":95,"pocket_motifs":["internal loop","stem"],"rmsd":2.89,"host_chain_rmsd":2.47,"pocket_rmsd":2.63,"lig_bsa":658.7,"ligand_burial":0.571,"tm_score":0.214,"rg_apo":17.97,"rg_holo":17.88,"rg_delta":-0.09,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":2,"bp_conserved":18,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":16,"maxd":7.5,"water":13,"hbonds":11,"mw":864.0,"logp":-8.14,"thumb_img":true,"thumb_v":1785488730,"apo_alts":[],"n_apo_copies":0},{"id":"2PWT_LHA_B_D_50_pocket","title":"2PWT (LHA) vs 3BNL (apo)","struct_title":"Crystal structure of the bacterial ribosomal decoding site complexed with aminoglycoside containing the L-HABA group","holo_pdb":"2PWT","ligand":"LHA","holo_chain":"B","holo_rna_chain":"B","lig_auth_chain":"B","nearest_rna_chain":"A","lig_resseq":"50","apo_pdb":"3BNL","apo_chain":"A","holo_len":21,"apo_len":22,"pocket_size":21,"thumb":{"holo":[[0.053,0.148],[0.117,0.229],[0.196,0.278],[0.265,0.288],[0.312,0.24],[0.355,0.16],[0.404,0.079],[0.453,0.023],[0.494,0.003],[0.53,0.03],[0.569,0.097],[0.591,0.189],[0.625,0.273],[0.669,0.337],[0.792,0.425],[0.857,0.39],[0.839,0.275],[0.857,0.161],[0.888,0.079],[0.919,0.016],[0.972,0.0]],"apo":[[0.0,0.058],[0.05,0.12],[0.109,0.19],[0.171,0.252],[0.234,0.271],[0.3,0.256],[0.355,0.199],[0.398,0.123],[0.436,0.067],[0.476,0.037],[0.507,0.057],[0.553,0.119],[0.603,0.196],[0.66,0.259],[0.726,0.298],[0.803,0.363],[0.842,0.337],[0.844,0.253],[0.853,0.146],[0.895,0.079],[0.946,0.044],[1.0,0.055]]},"method":"X-ray","resolution":1.8,"rna_type":"Ribosomal RNA","rna_group":"Protein synthesis","num_chains":2,"total_rna_len":42,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":95,"pocket_motifs":["internal loop","stem"],"rmsd":2.84,"host_chain_rmsd":2.48,"pocket_rmsd":2.82,"lig_bsa":670.3,"ligand_burial":0.579,"tm_score":0.258,"rg_apo":17.97,"rg_holo":17.91,"rg_delta":-0.06,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":2,"bp_conserved":18,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":16,"maxd":6.3,"water":11,"hbonds":12,"mw":864.0,"logp":-8.14,"thumb_img":true,"thumb_v":1785488731,"apo_alts":[],"n_apo_copies":0},{"id":"2PWT_LHA_B_E_55_pocket","title":"2PWT (LHA) vs 3BNL (apo)","struct_title":"Crystal structure of the bacterial ribosomal decoding site complexed with aminoglycoside containing the L-HABA group","holo_pdb":"2PWT","ligand":"LHA","holo_chain":"B","holo_rna_chain":"B","lig_auth_chain":"B","nearest_rna_chain":"B","lig_resseq":"55","apo_pdb":"3BNL","apo_chain":"A","holo_len":21,"apo_len":22,"pocket_size":9,"thumb":{"holo":[[0.053,0.148],[0.117,0.229],[0.196,0.278],[0.265,0.288],[0.312,0.24],[0.355,0.16],[0.404,0.079],[0.453,0.023],[0.494,0.003],[0.53,0.03],[0.569,0.097],[0.591,0.189],[0.625,0.273],[0.669,0.337],[0.792,0.425],[0.857,0.39],[0.839,0.275],[0.857,0.161],[0.888,0.079],[0.919,0.016],[0.972,0.0]],"apo":[[0.0,0.058],[0.05,0.12],[0.109,0.19],[0.171,0.252],[0.234,0.271],[0.3,0.256],[0.355,0.199],[0.398,0.123],[0.436,0.067],[0.476,0.037],[0.507,0.057],[0.553,0.119],[0.603,0.196],[0.66,0.259],[0.726,0.298],[0.803,0.363],[0.842,0.337],[0.844,0.253],[0.853,0.146],[0.895,0.079],[0.946,0.044],[1.0,0.055]]},"method":"X-ray","resolution":1.8,"rna_type":"Ribosomal RNA","rna_group":"Protein synthesis","num_chains":2,"total_rna_len":42,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":95,"pocket_motifs":["stem"],"rmsd":2.84,"host_chain_rmsd":2.48,"pocket_rmsd":2.3,"lig_bsa":141.9,"ligand_burial":0.138,"tm_score":0.258,"rg_apo":17.97,"rg_holo":17.91,"rg_delta":-0.06,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":2,"bp_conserved":18,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":16,"maxd":6.3,"water":3,"hbonds":2,"mw":864.0,"logp":-8.14,"thumb_img":true,"thumb_v":1785389620,"apo_alts":[],"n_apo_copies":0},{"id":"2YDH_SAM_A_G_1100_pocket","title":"2YDH (SAM) vs 3IQP (apo)","struct_title":"Crystal structure of the SAM-I riboswitch A94G U34 G18U G19U variant in complex with SAM","holo_pdb":"2YDH","ligand":"SAM","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"1100","apo_pdb":"3IQP","apo_chain":"A","holo_len":94,"apo_len":94,"pocket_size":25,"thumb":{"holo":[[0.382,0.175],[0.432,0.1],[0.441,0.04],[0.43,0.018],[0.42,0.047],[0.405,0.1],[0.412,0.18],[0.449,0.253],[0.501,0.314],[0.4,0.321],[0.325,0.355],[0.273,0.412],[0.213,0.528],[0.207,0.647],[0.121,0.578],[0.094,0.591],[0.11,0.592],[0.176,0.614],[0.236,0.658],[0.347,0.651],[0.379,0.601],[0.405,0.533],[0.459,0.48],[0.473,0.373],[0.546,0.379],[0.636,0.412],[0.676,0.462],[0.658,0.498],[0.614,0.534],[0.533,0.557],[0.448,0.577],[0.399,0.636],[0.322,0.736],[0.337,0.733],[0.284,0.672],[0.343,0.599],[0.316,0.533],[0.239,0.505],[0.157,0.483],[0.096,0.481],[0.083,0.478],[0.126,0.458],[0.19,0.411],[0.25,0.352],[0.26,0.271],[0.246,0.192],[0.289,0.151],[0.218,0.103],[0.143,0.075],[0.089,0.065],[0.061,0.009],[0.045,0.083],[0.0,0.16],[0.041,0.183],[0.077,0.181],[0.145,0.183],[0.214,0.224],[0.267,0.272],[0.301,0.334],[0.29,0.423],[0.413,0.506],[0.492,0.482],[0.525,0.359],[0.494,0.327],[0.54,0.444],[0.618,0.425],[0.658,0.388],[0.687,0.343],[0.725,0.239],[0.773,0.204],[0.807,0.179],[0.839,0.204],[0.872,0.276],[0.914,0.35],[1.0,0.413],[0.927,0.447],[0.859,0.475],[0.813,0.421],[0.782,0.355],[0.75,0.279],[0.718,0.209],[0.69,0.166],[0.664,0.174],[0.631,0.205],[0.574,0.255],[0.496,0.282],[0.419,0.278],[0.351,0.235],[0.311,0.161],[0.299,0.082],[0.309,0.023],[0.333,0.003],[0.36,0.008],[0.349,0.045]],"apo":[[0.392,0.17],[0.426,0.107],[0.44,0.041],[0.431,0.024],[0.424,0.049],[0.412,0.099],[0.415,0.175],[0.455,0.252],[0.489,0.321],[0.383,0.306],[0.314,0.347],[0.266,0.401],[0.231,0.516],[0.165,0.574],[0.117,0.592],[0.096,0.606],[0.122,0.603],[0.189,0.62],[0.252,0.666],[0.346,0.645],[0.381,0.597],[0.406,0.533],[0.456,0.48],[0.472,0.374],[0.545,0.386],[0.642,0.421],[0.677,0.478],[0.662,0.515],[0.606,0.543],[0.531,0.563],[0.445,0.583],[0.397,0.64],[0.338,0.755],[0.339,0.747],[0.305,0.691],[0.348,0.602],[0.31,0.535],[0.235,0.51],[0.15,0.498],[0.092,0.497],[0.101,0.489],[0.134,0.468],[0.187,0.417],[0.242,0.356],[0.237,0.284],[0.313,0.228],[0.293,0.155],[0.229,0.105],[0.151,0.073],[0.096,0.062],[0.063,0.0],[0.054,0.074],[0.008,0.148],[0.045,0.17],[0.074,0.169],[0.137,0.178],[0.21,0.209],[0.26,0.268],[0.292,0.329],[0.289,0.415],[0.409,0.511],[0.484,0.488],[0.527,0.361],[0.488,0.332],[0.536,0.454],[0.62,0.43],[0.658,0.393],[0.682,0.346],[0.724,0.244],[0.768,0.197],[0.801,0.173],[0.838,0.201],[0.875,0.262],[0.914,0.325],[0.994,0.406],[0.925,0.443],[0.857,0.469],[0.809,0.413],[0.778,0.344],[0.746,0.266],[0.719,0.196],[0.685,0.164],[0.66,0.174],[0.627,0.208],[0.568,0.264],[0.496,0.287],[0.422,0.284],[0.358,0.235],[0.312,0.158],[0.298,0.081],[0.309,0.017],[0.332,0.003],[0.362,0.01],[0.359,0.044]]},"method":"X-ray","resolution":2.9,"rna_type":"Enzyme cofactor riboswitch","rna_group":"Riboswitch","num_chains":1,"total_rna_len":94,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":97,"global_identity":97,"pocket_motifs":["junction","internal loop","stem"],"rmsd":1.23,"host_chain_rmsd":1.23,"pocket_rmsd":1.37,"lig_bsa":470.7,"ligand_burial":0.899,"tm_score":0.928,"rg_apo":20.88,"rg_holo":20.86,"rg_delta":-0.02,"bp_rewire_src":"dssr","bp_formed":5,"bp_broken":5,"bp_conserved":40,"bp_formed_wc":0,"bp_broken_wc":1,"bp_conserved_wc":30,"maxd":5.7,"water":0,"hbonds":8,"mw":398.4,"logp":-3.26,"thumb_img":true,"thumb_v":1785389620,"apo_alts":[],"n_apo_copies":0},{"id":"2YGH_SAM_A_B_1096_pocket","title":"2YGH (SAM) vs 3IQP (apo)","struct_title":"SAM-I riboswitch with a G2nA mutation in the Kink turn in complex with S-adenosylmethionine","holo_pdb":"2YGH","ligand":"SAM","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"1096","apo_pdb":"3IQP","apo_chain":"A","holo_len":94,"apo_len":94,"pocket_size":25,"thumb":{"holo":[[0.574,0.55],[0.558,0.626],[0.567,0.693],[0.583,0.72],[0.589,0.697],[0.601,0.65],[0.587,0.573],[0.552,0.496],[0.488,0.432],[0.605,0.434],[0.678,0.397],[0.728,0.347],[0.807,0.236],[0.805,0.125],[0.879,0.186],[0.907,0.18],[0.881,0.175],[0.815,0.154],[0.76,0.099],[0.666,0.12],[0.63,0.17],[0.602,0.231],[0.546,0.277],[0.53,0.39],[0.459,0.378],[0.368,0.339],[0.33,0.288],[0.348,0.245],[0.399,0.211],[0.476,0.192],[0.561,0.179],[0.615,0.127],[0.677,0.02],[0.685,0.022],[0.719,0.085],[0.663,0.171],[0.696,0.237],[0.771,0.267],[0.85,0.275],[0.912,0.28],[0.915,0.284],[0.875,0.303],[0.815,0.342],[0.754,0.403],[0.738,0.477],[0.751,0.555],[0.714,0.592],[0.782,0.637],[0.864,0.668],[0.918,0.688],[0.953,0.745],[0.966,0.671],[1.0,0.599],[0.96,0.573],[0.929,0.571],[0.859,0.559],[0.789,0.522],[0.732,0.475],[0.704,0.412],[0.714,0.333],[0.593,0.242],[0.518,0.265],[0.476,0.392],[0.51,0.423],[0.47,0.304],[0.388,0.324],[0.346,0.36],[0.319,0.42],[0.279,0.519],[0.24,0.564],[0.208,0.581],[0.177,0.546],[0.141,0.478],[0.098,0.407],[0.0,0.368],[0.065,0.324],[0.132,0.287],[0.181,0.334],[0.219,0.391],[0.261,0.461],[0.298,0.531],[0.329,0.578],[0.353,0.578],[0.38,0.544],[0.436,0.498],[0.513,0.466],[0.587,0.466],[0.651,0.511],[0.697,0.583],[0.712,0.657],[0.707,0.702],[0.679,0.708],[0.644,0.705],[0.638,0.646]],"apo":[[0.612,0.575],[0.578,0.638],[0.565,0.705],[0.574,0.724],[0.581,0.7],[0.594,0.651],[0.59,0.576],[0.551,0.5],[0.517,0.433],[0.623,0.448],[0.691,0.408],[0.738,0.354],[0.773,0.239],[0.838,0.182],[0.885,0.163],[0.906,0.147],[0.88,0.15],[0.813,0.132],[0.75,0.086],[0.658,0.107],[0.623,0.155],[0.598,0.219],[0.549,0.272],[0.533,0.376],[0.461,0.364],[0.364,0.329],[0.33,0.273],[0.345,0.237],[0.4,0.21],[0.475,0.191],[0.56,0.171],[0.608,0.114],[0.665,0.0],[0.665,0.01],[0.698,0.063],[0.656,0.151],[0.693,0.217],[0.768,0.241],[0.852,0.253],[0.91,0.255],[0.901,0.264],[0.869,0.286],[0.816,0.337],[0.762,0.398],[0.767,0.469],[0.691,0.524],[0.712,0.596],[0.775,0.645],[0.852,0.677],[0.906,0.688],[0.94,0.751],[0.949,0.678],[0.994,0.605],[0.957,0.582],[0.928,0.581],[0.865,0.572],[0.794,0.54],[0.744,0.483],[0.712,0.423],[0.715,0.338],[0.596,0.243],[0.522,0.267],[0.48,0.393],[0.518,0.42],[0.47,0.299],[0.387,0.323],[0.349,0.359],[0.325,0.405],[0.284,0.506],[0.24,0.553],[0.208,0.577],[0.171,0.551],[0.135,0.492],[0.096,0.429],[0.017,0.348],[0.085,0.312],[0.153,0.286],[0.2,0.341],[0.23,0.411],[0.262,0.488],[0.289,0.556],[0.323,0.586],[0.348,0.576],[0.379,0.542],[0.438,0.486],[0.509,0.463],[0.583,0.467],[0.647,0.515],[0.692,0.592],[0.706,0.668],[0.695,0.73],[0.672,0.743],[0.642,0.735],[0.645,0.7]]},"method":"X-ray","resolution":2.6,"rna_type":"Enzyme cofactor riboswitch","rna_group":"Riboswitch","num_chains":1,"total_rna_len":95,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":98,"global_identity":97,"pocket_motifs":["junction","internal loop","stem"],"rmsd":1.59,"host_chain_rmsd":1.59,"pocket_rmsd":1.33,"lig_bsa":474.9,"ligand_burial":0.885,"tm_score":0.855,"rg_apo":20.94,"rg_holo":20.75,"rg_delta":-0.19,"bp_rewire_src":"dssr","bp_formed":3,"bp_broken":4,"bp_conserved":41,"bp_formed_wc":0,"bp_broken_wc":1,"bp_conserved_wc":30,"maxd":5.0,"water":2,"hbonds":6,"mw":398.4,"logp":-3.26,"thumb_img":true,"thumb_v":1785389620,"apo_alts":[],"n_apo_copies":0},{"id":"3BNQ_PAR_C_I_101_pocket","title":"3BNQ (PAR) vs 3BNP (apo)","struct_title":"Crystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding Site in the Presence of SrCl2 (A1555G mutant, Br-derivative)","holo_pdb":"3BNQ","ligand":"PAR","holo_chain":"C","holo_rna_chain":"C","lig_auth_chain":"C","nearest_rna_chain":"C","lig_resseq":"101","apo_pdb":"3BNP","apo_chain":"B","holo_len":23,"apo_len":21,"pocket_size":10,"thumb":{"holo":[[0.0,0.044],[0.036,0.122],[0.074,0.204],[0.134,0.264],[0.187,0.273],[0.239,0.23],[0.293,0.168],[0.345,0.092],[0.401,0.041],[0.451,0.041],[0.487,0.081],[0.532,0.148],[0.578,0.229],[0.621,0.292],[0.672,0.324],[0.744,0.309],[0.813,0.284],[0.907,0.364],[0.879,0.273],[0.891,0.175],[0.919,0.09],[0.932,0.036],[0.949,0.016]],"apo":[[0.063,0.323],[0.109,0.331],[0.159,0.281],[0.212,0.203],[0.277,0.129],[0.37,0.057],[0.427,0.0],[0.466,0.013],[0.503,0.045],[0.539,0.113],[0.582,0.203],[0.618,0.274],[0.659,0.313],[0.719,0.299],[0.802,0.281],[0.901,0.358],[0.867,0.284],[0.891,0.198],[0.934,0.118],[0.963,0.047],[1.0,0.008]]},"method":"X-ray","resolution":2.0,"rna_type":"Ribosomal RNA","rna_group":"Protein synthesis","num_chains":2,"total_rna_len":86,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":90,"global_identity":83,"pocket_motifs":["internal loop","stem"],"rmsd":4.7,"host_chain_rmsd":3.54,"pocket_rmsd":3.55,"lig_bsa":213.8,"ligand_burial":0.282,"tm_score":0.323,"rg_apo":19.47,"rg_holo":18.8,"rg_delta":-0.67,"bp_rewire_src":"dssr","bp_formed":1,"bp_broken":0,"bp_conserved":17,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":14,"maxd":14.6,"water":3,"hbonds":2,"mw":615.6,"logp":-8.86,"thumb_img":true,"thumb_v":1785444653,"apo_alts":[],"n_apo_copies":0},{"id":"3BNR_PAR_C_F_24_pocket","title":"3BNR (PAR) vs 3BNP (apo)","struct_title":"Crystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding Site in the presence of nonspecifically bound paromomycin (A1555G mutant, Br-derivative)","holo_pdb":"3BNR","ligand":"PAR","holo_chain":"C","holo_rna_chain":"C","lig_auth_chain":"C","nearest_rna_chain":"C","lig_resseq":"24","apo_pdb":"3BNP","apo_chain":"B","holo_len":23,"apo_len":21,"pocket_size":10,"thumb":{"holo":[[0.0,0.049],[0.04,0.123],[0.079,0.206],[0.137,0.265],[0.191,0.275],[0.242,0.229],[0.296,0.169],[0.348,0.09],[0.405,0.04],[0.455,0.039],[0.489,0.079],[0.53,0.146],[0.575,0.227],[0.621,0.289],[0.67,0.319],[0.742,0.303],[0.814,0.281],[0.908,0.365],[0.878,0.271],[0.893,0.176],[0.923,0.094],[0.939,0.04],[0.958,0.02]],"apo":[[0.069,0.321],[0.114,0.328],[0.164,0.279],[0.217,0.201],[0.282,0.128],[0.374,0.056],[0.43,0.0],[0.47,0.014],[0.507,0.046],[0.542,0.115],[0.584,0.204],[0.62,0.274],[0.66,0.312],[0.72,0.298],[0.802,0.281],[0.901,0.358],[0.867,0.283],[0.891,0.197],[0.934,0.118],[0.963,0.049],[1.0,0.01]]},"method":"X-ray","resolution":2.1,"rna_type":"Ribosomal RNA","rna_group":"Protein synthesis","num_chains":2,"total_rna_len":85,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":90,"global_identity":83,"pocket_motifs":["internal loop","stem"],"rmsd":4.64,"host_chain_rmsd":3.39,"pocket_rmsd":3.33,"lig_bsa":188.3,"ligand_burial":0.242,"tm_score":0.336,"rg_apo":19.47,"rg_holo":18.85,"rg_delta":-0.62,"bp_rewire_src":"dssr","bp_formed":1,"bp_broken":0,"bp_conserved":17,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":14,"maxd":14.9,"water":7,"hbonds":2,"mw":615.6,"logp":-8.86,"thumb_img":true,"thumb_v":1785444653,"apo_alts":[],"n_apo_copies":0},{"id":"3C44_PAR_A_C_24_pocket","title":"3C44 (PAR) vs 2QEK (apo)","struct_title":"Crystal structure of HIV-1 subtype F DIS extended duplex RNA bound to paromomycin","holo_pdb":"3C44","ligand":"PAR","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"B","lig_resseq":"24","apo_pdb":"2QEK","apo_chain":"B","holo_len":23,"apo_len":23,"pocket_size":20,"thumb":{"holo":[[0.017,0.364],[0.034,0.371],[0.066,0.343],[0.103,0.261],[0.142,0.174],[0.186,0.1],[0.246,0.073],[0.415,0.018],[0.476,0.072],[0.397,0.205],[0.414,0.313],[0.444,0.392],[0.485,0.431],[0.535,0.404],[0.581,0.332],[0.618,0.236],[0.675,0.16],[0.75,0.111],[0.824,0.113],[0.89,0.168],[0.944,0.255],[0.979,0.337],[1.0,0.396]],"apo":[[0.0,0.411],[0.021,0.406],[0.045,0.354],[0.074,0.275],[0.111,0.185],[0.165,0.11],[0.228,0.084],[0.335,0.0],[0.371,0.062],[0.401,0.176],[0.437,0.271],[0.472,0.339],[0.507,0.374],[0.554,0.358],[0.604,0.298],[0.655,0.215],[0.722,0.142],[0.804,0.109],[0.876,0.125],[0.927,0.197],[0.958,0.294],[0.974,0.389],[0.984,0.454]]},"method":"X-ray","resolution":2.0,"rna_type":"Virus NA","rna_group":"Viral","num_chains":2,"total_rna_len":46,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["internal loop","stem"],"rmsd":3.12,"host_chain_rmsd":2.96,"pocket_rmsd":2.97,"lig_bsa":532.4,"ligand_burial":0.701,"tm_score":0.323,"rg_apo":19.66,"rg_holo":18.64,"rg_delta":-1.02,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":1,"bp_conserved":20,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":20,"maxd":9.8,"water":6,"hbonds":11,"mw":615.6,"logp":-8.86,"thumb_img":true,"thumb_v":1785488731,"apo_alts":[],"n_apo_copies":0},{"id":"3C44_PAR_B_F_24_pocket","title":"3C44 (PAR) vs 2QEK (apo)","struct_title":"Crystal structure of HIV-1 subtype F DIS extended duplex RNA bound to paromomycin","holo_pdb":"3C44","ligand":"PAR","holo_chain":"B","holo_rna_chain":"B","lig_auth_chain":"B","nearest_rna_chain":"B","lig_resseq":"24","apo_pdb":"2QEK","apo_chain":"B","holo_len":23,"apo_len":23,"pocket_size":21,"thumb":{"holo":[[0.017,0.394],[0.027,0.386],[0.047,0.331],[0.074,0.243],[0.11,0.15],[0.168,0.087],[0.243,0.072],[0.404,0.0],[0.362,0.121],[0.391,0.227],[0.428,0.32],[0.475,0.39],[0.528,0.408],[0.567,0.373],[0.601,0.29],[0.632,0.192],[0.685,0.117],[0.753,0.091],[0.82,0.12],[0.877,0.188],[0.933,0.278],[0.976,0.346],[1.0,0.387]],"apo":[[0.0,0.428],[0.021,0.411],[0.044,0.35],[0.073,0.266],[0.108,0.175],[0.161,0.105],[0.222,0.085],[0.326,0.006],[0.363,0.073],[0.394,0.19],[0.433,0.283],[0.469,0.343],[0.504,0.366],[0.551,0.339],[0.6,0.273],[0.65,0.19],[0.715,0.121],[0.796,0.095],[0.868,0.118],[0.919,0.194],[0.951,0.289],[0.969,0.38],[0.98,0.435]]},"method":"X-ray","resolution":2.0,"rna_type":"Virus NA","rna_group":"Viral","num_chains":2,"total_rna_len":46,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["internal loop","stem"],"rmsd":2.9,"host_chain_rmsd":2.22,"pocket_rmsd":3.22,"lig_bsa":457.7,"ligand_burial":0.609,"tm_score":0.256,"rg_apo":19.66,"rg_holo":19.06,"rg_delta":-0.6,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":1,"bp_conserved":20,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":20,"maxd":9.4,"water":8,"hbonds":8,"mw":615.6,"logp":-8.86,"thumb_img":true,"thumb_v":1785389620,"apo_alts":[],"n_apo_copies":0},{"id":"3D0U_LYS_A_E_205_pocket","title":"3D0U (LYS) vs 3D0X (apo)","struct_title":"Crystal Structure of Lysine Riboswitch Bound to Lysine","holo_pdb":"3D0U","ligand":"LYS","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"205","apo_pdb":"3D0X","apo_chain":"A","holo_len":161,"apo_len":161,"pocket_size":19,"thumb":{"holo":[[0.106,0.431],[0.118,0.399],[0.125,0.343],[0.134,0.286],[0.142,0.241],[0.152,0.209],[0.174,0.187],[0.216,0.18],[0.264,0.131],[0.339,0.095],[0.297,0.164],[0.336,0.197],[0.374,0.202],[0.403,0.184],[0.433,0.144],[0.463,0.089],[0.499,0.064],[0.534,0.01],[0.558,0.018],[0.578,0.035],[0.604,0.078],[0.645,0.117],[0.703,0.084],[0.755,0.058],[0.728,0.126],[0.746,0.176],[0.788,0.18],[0.841,0.161],[0.898,0.138],[0.943,0.125],[0.972,0.125],[0.98,0.148],[0.964,0.192],[0.932,0.24],[0.907,0.299],[0.937,0.351],[0.907,0.399],[0.867,0.37],[0.816,0.357],[0.741,0.355],[0.67,0.347],[0.67,0.405],[0.693,0.459],[0.731,0.501],[0.774,0.511],[0.826,0.487],[0.87,0.458],[0.906,0.411],[0.956,0.391],[1.0,0.35],[0.925,0.37],[0.882,0.345],[0.86,0.304],[0.864,0.251],[0.882,0.191],[0.9,0.135],[0.913,0.086],[0.91,0.063],[0.886,0.061],[0.842,0.081],[0.788,0.098],[0.735,0.131],[0.684,0.163],[0.635,0.193],[0.592,0.205],[0.558,0.173],[0.532,0.11],[0.507,0.07],[0.471,0.008],[0.438,0.003],[0.409,0.029],[0.382,0.078],[0.356,0.133],[0.33,0.183],[0.297,0.199],[0.258,0.219],[0.298,0.298],[0.304,0.235],[0.353,0.254],[0.393,0.274],[0.417,0.323],[0.428,0.379],[0.441,0.434],[0.462,0.465],[0.494,0.471],[0.535,0.443],[0.579,0.41],[0.616,0.364],[0.645,0.336],[0.672,0.338],[0.76,0.368],[0.823,0.376],[0.796,0.439],[0.754,0.48],[0.703,0.5],[0.657,0.494],[0.625,0.451],[0.609,0.393],[0.602,0.342],[0.59,0.311],[0.568,0.309],[0.534,0.332],[0.491,0.372],[0.449,0.41],[0.414,0.433],[0.378,0.436],[0.298,0.398],[0.366,0.423],[0.356,0.368],[0.334,0.311],[0.257,0.263],[0.286,0.209],[0.322,0.166],[0.344,0.147],[0.372,0.148],[0.407,0.179],[0.443,0.224],[0.477,0.269],[0.505,0.293],[0.528,0.288],[0.549,0.256],[0.581,0.205],[0.644,0.157],[0.597,0.135],[0.545,0.102],[0.537,0.109],[0.505,0.149],[0.487,0.207],[0.47,0.262],[0.447,0.298],[0.421,0.304],[0.391,0.29],[0.36,0.253],[0.329,0.204],[0.287,0.169],[0.264,0.152],[0.235,0.165],[0.203,0.194],[0.166,0.245],[0.129,0.284],[0.104,0.311],[0.081,0.31],[0.058,0.27],[0.0,0.229],[0.049,0.199],[0.102,0.192],[0.13,0.224],[0.146,0.279],[0.161,0.318],[0.18,0.337],[0.22,0.326],[0.234,0.303],[0.23,0.386],[0.192,0.315],[0.152,0.273],[0.113,0.241],[0.082,0.238],[0.059,0.259],[0.052,0.305],[0.05,0.369],[0.026,0.421]],"apo":[[0.109,0.439],[0.118,0.408],[0.125,0.356],[0.133,0.298],[0.138,0.249],[0.15,0.216],[0.171,0.19],[0.21,0.171],[0.265,0.146],[0.325,0.085],[0.299,0.165],[0.338,0.197],[0.373,0.198],[0.404,0.179],[0.433,0.139],[0.464,0.086],[0.5,0.062],[0.538,0.007],[0.561,0.018],[0.581,0.036],[0.605,0.081],[0.647,0.118],[0.704,0.087],[0.755,0.061],[0.729,0.129],[0.747,0.176],[0.79,0.179],[0.843,0.159],[0.9,0.134],[0.944,0.122],[0.972,0.125],[0.982,0.148],[0.962,0.193],[0.933,0.238],[0.907,0.301],[0.938,0.351],[0.907,0.399],[0.868,0.369],[0.815,0.357],[0.74,0.355],[0.67,0.347],[0.67,0.404],[0.694,0.459],[0.73,0.499],[0.773,0.511],[0.82,0.488],[0.866,0.457],[0.904,0.412],[0.954,0.391],[0.996,0.355],[0.922,0.369],[0.88,0.345],[0.859,0.303],[0.863,0.251],[0.882,0.194],[0.901,0.136],[0.914,0.086],[0.913,0.062],[0.887,0.059],[0.841,0.078],[0.788,0.096],[0.736,0.127],[0.686,0.16],[0.636,0.191],[0.594,0.203],[0.557,0.174],[0.534,0.113],[0.508,0.07],[0.476,0.006],[0.443,0.0],[0.413,0.026],[0.385,0.072],[0.358,0.126],[0.332,0.176],[0.298,0.194],[0.257,0.221],[0.297,0.294],[0.306,0.23],[0.356,0.252],[0.393,0.275],[0.415,0.324],[0.424,0.381],[0.438,0.434],[0.459,0.465],[0.491,0.469],[0.532,0.441],[0.577,0.407],[0.611,0.363],[0.641,0.333],[0.669,0.336],[0.759,0.367],[0.818,0.375],[0.792,0.437],[0.75,0.478],[0.699,0.499],[0.656,0.492],[0.623,0.449],[0.606,0.392],[0.599,0.342],[0.587,0.311],[0.565,0.308],[0.531,0.33],[0.489,0.369],[0.446,0.407],[0.41,0.433],[0.373,0.435],[0.292,0.4],[0.36,0.425],[0.35,0.368],[0.328,0.311],[0.253,0.261],[0.285,0.206],[0.322,0.166],[0.346,0.141],[0.377,0.148],[0.415,0.179],[0.452,0.222],[0.485,0.269],[0.512,0.294],[0.531,0.291],[0.549,0.259],[0.584,0.207],[0.646,0.16],[0.601,0.141],[0.552,0.107],[0.537,0.112],[0.506,0.153],[0.485,0.21],[0.469,0.266],[0.446,0.3],[0.421,0.31],[0.396,0.289],[0.366,0.249],[0.334,0.197],[0.294,0.158],[0.267,0.147],[0.238,0.165],[0.204,0.19],[0.169,0.238],[0.13,0.277],[0.105,0.305],[0.082,0.31],[0.059,0.271],[0.002,0.229],[0.052,0.202],[0.107,0.194],[0.133,0.227],[0.149,0.28],[0.163,0.312],[0.182,0.334],[0.219,0.328],[0.234,0.303],[0.229,0.383],[0.193,0.312],[0.152,0.27],[0.11,0.242],[0.081,0.245],[0.059,0.271],[0.049,0.316],[0.05,0.385],[0.026,0.435]]},"method":"X-ray","resolution":2.8,"rna_type":"Amino-acid riboswitch","rna_group":"Riboswitch","num_chains":1,"total_rna_len":161,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["junction","internal loop","hairpin loop","bulge","stem"],"rmsd":0.61,"host_chain_rmsd":0.61,"pocket_rmsd":0.75,"lig_bsa":327.6,"ligand_burial":1.0,"tm_score":0.986,"rg_apo":28.61,"rg_holo":28.64,"rg_delta":0.03,"bp_rewire_src":"dssr","bp_formed":2,"bp_broken":0,"bp_conserved":78,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":56,"maxd":1.8,"water":1,"hbonds":5,"mw":147.2,"logp":-1.19,"thumb_img":true,"thumb_v":1785389620,"apo_alts":[],"n_apo_copies":0},{"id":"3DVV_RIO_A_F_27_pocket","title":"3DVV (RIO) vs 2QEK (apo)","struct_title":"Crystal structure of HIV-1 subtype F DIS extended duplex RNA bound to ribostamycin (U267OMe)","holo_pdb":"3DVV","ligand":"RIO","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"27","apo_pdb":"2QEK","apo_chain":"B","holo_len":23,"apo_len":23,"pocket_size":21,"thumb":{"holo":[[0.034,0.077],[0.041,0.058],[0.059,0.097],[0.095,0.181],[0.138,0.267],[0.185,0.342],[0.241,0.385],[0.408,0.443],[0.449,0.399],[0.412,0.265],[0.434,0.151],[0.469,0.071],[0.508,0.046],[0.551,0.067],[0.591,0.148],[0.634,0.24],[0.692,0.316],[0.768,0.345],[0.842,0.329],[0.9,0.269],[0.946,0.177],[0.977,0.088],[1.0,0.05]],"apo":[[0.0,0.036],[0.021,0.042],[0.045,0.096],[0.074,0.177],[0.111,0.269],[0.166,0.345],[0.23,0.371],[0.337,0.456],[0.374,0.393],[0.406,0.277],[0.443,0.18],[0.479,0.112],[0.514,0.078],[0.562,0.096],[0.612,0.157],[0.664,0.242],[0.732,0.316],[0.815,0.349],[0.888,0.333],[0.94,0.259],[0.972,0.161],[0.989,0.065],[0.999,0.0]]},"method":"X-ray","resolution":2.0,"rna_type":"Virus NA","rna_group":"Viral","num_chains":2,"total_rna_len":44,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["internal loop","stem"],"rmsd":2.87,"host_chain_rmsd":2.19,"pocket_rmsd":3.64,"lig_bsa":381.9,"ligand_burial":0.635,"tm_score":0.363,"rg_apo":19.66,"rg_holo":18.61,"rg_delta":-1.05,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":1,"bp_conserved":20,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":20,"maxd":9.5,"water":7,"hbonds":8,"mw":454.5,"logp":-6.65,"thumb_img":true,"thumb_v":1785444654,"apo_alts":[],"n_apo_copies":0},{"id":"3DVV_RIO_B_I_26_pocket","title":"3DVV (RIO) vs 2QEK (apo)","struct_title":"Crystal structure of HIV-1 subtype F DIS extended duplex RNA bound to ribostamycin (U267OMe)","holo_pdb":"3DVV","ligand":"RIO","holo_chain":"B","holo_rna_chain":"B","lig_auth_chain":"B","nearest_rna_chain":"B","lig_resseq":"26","apo_pdb":"2QEK","apo_chain":"B","holo_len":23,"apo_len":23,"pocket_size":20,"thumb":{"holo":[[0.035,0.393],[0.043,0.399],[0.063,0.347],[0.09,0.259],[0.127,0.162],[0.184,0.104],[0.244,0.075],[0.415,0.012],[0.474,0.063],[0.399,0.209],[0.434,0.313],[0.47,0.384],[0.517,0.418],[0.561,0.374],[0.592,0.287],[0.627,0.194],[0.684,0.117],[0.761,0.097],[0.832,0.132],[0.891,0.197],[0.944,0.286],[0.981,0.366],[1.0,0.394]],"apo":[[0.0,0.426],[0.021,0.412],[0.045,0.353],[0.074,0.269],[0.111,0.176],[0.166,0.103],[0.229,0.082],[0.337,0.0],[0.374,0.068],[0.405,0.186],[0.443,0.282],[0.479,0.345],[0.514,0.372],[0.562,0.348],[0.612,0.283],[0.663,0.199],[0.731,0.128],[0.814,0.099],[0.888,0.121],[0.94,0.198],[0.972,0.295],[0.989,0.389],[0.999,0.448]]},"method":"X-ray","resolution":2.0,"rna_type":"Virus NA","rna_group":"Viral","num_chains":2,"total_rna_len":44,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["internal loop","stem"],"rmsd":2.89,"host_chain_rmsd":2.49,"pocket_rmsd":3.1,"lig_bsa":389.9,"ligand_burial":0.671,"tm_score":0.233,"rg_apo":19.66,"rg_holo":18.53,"rg_delta":-1.13,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":1,"bp_conserved":20,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":20,"maxd":8.8,"water":4,"hbonds":10,"mw":454.5,"logp":-6.65,"thumb_img":true,"thumb_v":1785444654,"apo_alts":[],"n_apo_copies":0},{"id":"3F2Q_FMN_X_B_200_pocket","title":"3F2Q (FMN) vs 6WJS (apo)","struct_title":"Crystal structure of the FMN riboswitch bound to FMN","holo_pdb":"3F2Q","ligand":"FMN","holo_chain":"X","holo_rna_chain":"X","lig_auth_chain":"X","nearest_rna_chain":"X","lig_resseq":"200","apo_pdb":"6WJS","apo_chain":"X","holo_len":109,"apo_len":109,"pocket_size":28,"thumb":{"holo":[[0.07,0.434],[0.064,0.519],[0.086,0.575],[0.134,0.602],[0.19,0.601],[0.25,0.568],[0.32,0.544],[0.359,0.494],[0.401,0.485],[0.519,0.454],[0.573,0.415],[0.645,0.409],[0.749,0.411],[0.773,0.367],[0.843,0.349],[0.894,0.364],[0.944,0.383],[0.969,0.435],[0.975,0.507],[0.994,0.6],[0.926,0.587],[0.861,0.512],[0.781,0.477],[0.792,0.503],[0.868,0.447],[0.89,0.379],[0.877,0.322],[0.823,0.311],[0.759,0.331],[0.691,0.352],[0.62,0.369],[0.556,0.349],[0.474,0.422],[0.404,0.407],[0.346,0.365],[0.338,0.293],[0.349,0.226],[0.37,0.139],[0.414,0.196],[0.47,0.248],[0.549,0.321],[0.559,0.276],[0.455,0.241],[0.397,0.292],[0.381,0.36],[0.389,0.424],[0.427,0.479],[0.489,0.526],[0.544,0.56],[0.554,0.587],[0.524,0.603],[0.466,0.619],[0.393,0.647],[0.341,0.56],[0.397,0.54],[0.476,0.527],[0.535,0.501],[0.535,0.466],[0.589,0.378],[0.602,0.312],[0.591,0.204],[0.611,0.145],[0.618,0.073],[0.592,0.027],[0.534,0.005],[0.466,0.0],[0.398,0.014],[0.317,0.01],[0.347,0.074],[0.428,0.124],[0.505,0.171],[0.45,0.194],[0.465,0.119],[0.529,0.077],[0.602,0.064],[0.654,0.094],[0.687,0.136],[0.681,0.2],[0.657,0.266],[0.629,0.338],[0.623,0.406],[0.591,0.515],[0.615,0.581],[0.66,0.633],[0.725,0.642],[0.789,0.611],[0.874,0.558],[0.814,0.515],[0.735,0.498],[0.654,0.425],[0.683,0.446],[0.722,0.542],[0.699,0.612],[0.644,0.642],[0.574,0.658],[0.535,0.627],[0.499,0.65],[0.473,0.643],[0.433,0.606],[0.407,0.544],[0.387,0.469],[0.345,0.447],[0.322,0.428],[0.281,0.437],[0.226,0.476],[0.174,0.522],[0.111,0.559],[0.058,0.559],[0.0,0.535]],"apo":[[0.083,0.38],[0.075,0.464],[0.086,0.534],[0.13,0.594],[0.179,0.601],[0.243,0.577],[0.305,0.542],[0.364,0.503],[0.4,0.49],[0.524,0.456],[0.571,0.427],[0.64,0.409],[0.748,0.407],[0.78,0.376],[0.844,0.363],[0.91,0.365],[0.949,0.39],[0.974,0.443],[0.98,0.516],[1.0,0.604],[0.93,0.591],[0.862,0.522],[0.773,0.484],[0.795,0.502],[0.871,0.454],[0.895,0.38],[0.878,0.327],[0.823,0.313],[0.755,0.326],[0.687,0.345],[0.625,0.374],[0.558,0.36],[0.467,0.432],[0.387,0.409],[0.339,0.361],[0.333,0.297],[0.351,0.228],[0.37,0.146],[0.403,0.201],[0.471,0.248],[0.553,0.328],[0.552,0.267],[0.447,0.243],[0.386,0.296],[0.364,0.367],[0.375,0.424],[0.413,0.47],[0.479,0.5],[0.525,0.524],[0.558,0.548],[0.553,0.587],[0.536,0.654],[0.526,0.714],[0.469,0.74],[0.402,0.713],[0.369,0.668],[0.377,0.615],[0.411,0.568],[0.469,0.521],[0.521,0.477],[0.515,0.446],[0.587,0.377],[0.598,0.305],[0.59,0.2],[0.605,0.141],[0.612,0.063],[0.582,0.014],[0.534,0.01],[0.459,0.01],[0.391,0.012],[0.308,0.016],[0.34,0.068],[0.428,0.125],[0.496,0.168],[0.447,0.197],[0.461,0.13],[0.534,0.078],[0.605,0.068],[0.662,0.086],[0.687,0.139],[0.673,0.194],[0.663,0.252],[0.626,0.332],[0.642,0.402],[0.59,0.503],[0.618,0.577],[0.666,0.626],[0.728,0.646],[0.791,0.619],[0.876,0.566],[0.82,0.515],[0.736,0.498],[0.652,0.425],[0.684,0.453],[0.723,0.551],[0.697,0.618],[0.64,0.643],[0.575,0.657],[0.528,0.635],[0.475,0.678],[0.47,0.638],[0.432,0.59],[0.398,0.528],[0.37,0.458],[0.331,0.452],[0.318,0.433],[0.274,0.448],[0.226,0.486],[0.149,0.524]]},"method":"X-ray","resolution":2.95,"rna_type":"Enzyme cofactor riboswitch","rna_group":"Riboswitch","num_chains":1,"total_rna_len":107,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["junction","hairpin loop","stem"],"rmsd":2.15,"host_chain_rmsd":2.15,"pocket_rmsd":1.45,"lig_bsa":525.9,"ligand_burial":0.861,"tm_score":0.864,"rg_apo":21.87,"rg_holo":21.77,"rg_delta":-0.1,"bp_rewire_src":"dssr","bp_formed":10,"bp_broken":4,"bp_conserved":42,"bp_formed_wc":4,"bp_broken_wc":0,"bp_conserved_wc":29,"maxd":13.8,"water":0,"hbonds":9,"mw":456.3,"logp":-1.61,"thumb_img":true,"thumb_v":1785444656,"apo_alts":[{"pdb":"6WJR","rmsd":2.17,"host_chain_rmsd":2.17,"apo_chain":"X","apo_len":111,"identity":100,"global_identity":100,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.87,"rg_delta":0.17,"pocket_rmsd":1.41,"maxd":13.7,"bp_formed":3,"bp_broken":2,"bp_conserved":49}],"n_apo_copies":0},{"id":"3F2T_FMN_X_B_200_pocket","title":"3F2T (FMN) vs 6WJS (apo)","struct_title":"Crystal structure of the FMN riboswitch bound to FMN, iridium hexamine soak.","holo_pdb":"3F2T","ligand":"FMN","holo_chain":"X","holo_rna_chain":"X","lig_auth_chain":"X","nearest_rna_chain":"X","lig_resseq":"200","apo_pdb":"6WJS","apo_chain":"X","holo_len":109,"apo_len":109,"pocket_size":29,"thumb":{"holo":[[0.072,0.435],[0.068,0.514],[0.087,0.577],[0.132,0.607],[0.191,0.602],[0.249,0.577],[0.321,0.551],[0.358,0.497],[0.402,0.486],[0.518,0.454],[0.576,0.416],[0.651,0.413],[0.754,0.413],[0.78,0.369],[0.846,0.353],[0.906,0.357],[0.948,0.386],[0.972,0.438],[0.98,0.51],[1.0,0.604],[0.932,0.595],[0.864,0.521],[0.784,0.488],[0.794,0.507],[0.873,0.455],[0.899,0.385],[0.882,0.32],[0.826,0.316],[0.761,0.337],[0.694,0.355],[0.623,0.371],[0.559,0.348],[0.476,0.422],[0.402,0.408],[0.346,0.362],[0.339,0.289],[0.35,0.223],[0.372,0.139],[0.417,0.196],[0.473,0.25],[0.551,0.323],[0.56,0.277],[0.46,0.24],[0.396,0.284],[0.38,0.353],[0.393,0.42],[0.43,0.477],[0.488,0.526],[0.541,0.562],[0.552,0.591],[0.515,0.604],[0.449,0.624],[0.372,0.637],[0.333,0.559],[0.389,0.542],[0.469,0.531],[0.525,0.504],[0.528,0.457],[0.593,0.382],[0.606,0.315],[0.597,0.206],[0.617,0.146],[0.625,0.076],[0.601,0.027],[0.544,0.006],[0.475,0.0],[0.407,0.008],[0.323,0.005],[0.354,0.068],[0.432,0.122],[0.506,0.17],[0.454,0.192],[0.47,0.122],[0.533,0.078],[0.611,0.066],[0.664,0.095],[0.695,0.142],[0.684,0.202],[0.66,0.271],[0.632,0.342],[0.625,0.413],[0.591,0.517],[0.617,0.585],[0.663,0.642],[0.727,0.649],[0.79,0.622],[0.876,0.567],[0.817,0.524],[0.738,0.505],[0.656,0.43],[0.686,0.453],[0.723,0.55],[0.7,0.621],[0.641,0.653],[0.574,0.664],[0.532,0.632],[0.495,0.667],[0.475,0.642],[0.438,0.6],[0.406,0.536],[0.386,0.468],[0.344,0.446],[0.323,0.428],[0.28,0.44],[0.228,0.476],[0.174,0.532],[0.109,0.564],[0.056,0.565],[0.0,0.532]],"apo":[[0.085,0.376],[0.075,0.46],[0.086,0.53],[0.129,0.592],[0.178,0.599],[0.243,0.576],[0.305,0.542],[0.365,0.503],[0.4,0.49],[0.525,0.458],[0.573,0.429],[0.642,0.413],[0.75,0.412],[0.783,0.382],[0.848,0.37],[0.913,0.372],[0.952,0.397],[0.976,0.45],[0.981,0.524],[1.0,0.612],[0.93,0.598],[0.862,0.528],[0.774,0.489],[0.796,0.508],[0.873,0.46],[0.897,0.386],[0.881,0.333],[0.826,0.318],[0.759,0.331],[0.69,0.349],[0.627,0.377],[0.561,0.362],[0.468,0.433],[0.388,0.409],[0.341,0.361],[0.336,0.296],[0.355,0.228],[0.375,0.146],[0.408,0.201],[0.474,0.249],[0.555,0.33],[0.555,0.268],[0.45,0.243],[0.389,0.295],[0.366,0.366],[0.375,0.424],[0.414,0.47],[0.479,0.501],[0.525,0.526],[0.557,0.549],[0.551,0.588],[0.534,0.655],[0.523,0.715],[0.466,0.741],[0.399,0.713],[0.366,0.667],[0.375,0.614],[0.409,0.568],[0.468,0.521],[0.521,0.478],[0.515,0.447],[0.589,0.379],[0.6,0.307],[0.593,0.202],[0.609,0.143],[0.618,0.066],[0.588,0.016],[0.54,0.012],[0.466,0.011],[0.397,0.012],[0.314,0.015],[0.345,0.067],[0.433,0.125],[0.5,0.169],[0.451,0.197],[0.466,0.131],[0.54,0.08],[0.611,0.071],[0.668,0.089],[0.692,0.142],[0.677,0.198],[0.666,0.255],[0.628,0.334],[0.643,0.405],[0.59,0.505],[0.617,0.58],[0.665,0.629],[0.727,0.65],[0.791,0.624],[0.876,0.572],[0.82,0.52],[0.737,0.503],[0.654,0.429],[0.686,0.457],[0.723,0.555],[0.696,0.622],[0.639,0.646],[0.573,0.659],[0.527,0.637],[0.474,0.68],[0.469,0.64],[0.432,0.591],[0.397,0.528],[0.371,0.458],[0.332,0.452],[0.319,0.432],[0.276,0.447],[0.227,0.485],[0.15,0.523]]},"method":"X-ray","resolution":3.0,"rna_type":"Enzyme cofactor riboswitch","rna_group":"Riboswitch","num_chains":1,"total_rna_len":107,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["junction","hairpin loop","stem"],"rmsd":2.21,"host_chain_rmsd":2.21,"pocket_rmsd":1.38,"lig_bsa":535.3,"ligand_burial":0.859,"tm_score":0.87,"rg_apo":21.87,"rg_holo":21.86,"rg_delta":-0.01,"bp_rewire_src":"dssr","bp_formed":8,"bp_broken":4,"bp_conserved":42,"bp_formed_wc":4,"bp_broken_wc":0,"bp_conserved_wc":29,"maxd":14.4,"water":0,"hbonds":8,"mw":456.3,"logp":-1.61,"thumb_img":true,"thumb_v":1785444658,"apo_alts":[{"pdb":"6WJR","rmsd":2.24,"host_chain_rmsd":2.24,"apo_chain":"X","apo_len":111,"identity":100,"global_identity":100,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.867,"rg_delta":0.27,"pocket_rmsd":1.33,"maxd":14.3,"bp_formed":1,"bp_broken":2,"bp_conserved":49}],"n_apo_copies":0},{"id":"3F2W_FMN_X_B_200_pocket","title":"3F2W (FMN) vs 6WJS (apo)","struct_title":"Crystal structure of the FMn riboswitch bound to FMN, Ba2+ soak.","holo_pdb":"3F2W","ligand":"FMN","holo_chain":"X","holo_rna_chain":"X","lig_auth_chain":"X","nearest_rna_chain":"X","lig_resseq":"200","apo_pdb":"6WJS","apo_chain":"X","holo_len":109,"apo_len":109,"pocket_size":27,"thumb":{"holo":[[0.072,0.445],[0.072,0.521],[0.092,0.58],[0.135,0.617],[0.193,0.612],[0.248,0.579],[0.32,0.547],[0.356,0.494],[0.4,0.489],[0.519,0.455],[0.574,0.415],[0.645,0.413],[0.753,0.415],[0.777,0.373],[0.846,0.355],[0.904,0.359],[0.948,0.388],[0.972,0.444],[0.974,0.518],[1.0,0.607],[0.928,0.599],[0.861,0.525],[0.78,0.489],[0.794,0.515],[0.87,0.459],[0.894,0.39],[0.879,0.324],[0.825,0.315],[0.762,0.336],[0.695,0.353],[0.621,0.371],[0.554,0.349],[0.468,0.425],[0.397,0.405],[0.344,0.362],[0.338,0.294],[0.347,0.222],[0.371,0.139],[0.413,0.198],[0.466,0.251],[0.547,0.326],[0.555,0.274],[0.453,0.241],[0.396,0.288],[0.378,0.357],[0.386,0.423],[0.426,0.479],[0.482,0.529],[0.536,0.564],[0.55,0.596],[0.508,0.61],[0.449,0.627],[0.372,0.669],[0.324,0.56],[0.386,0.541],[0.469,0.533],[0.528,0.51],[0.523,0.465],[0.588,0.385],[0.601,0.315],[0.595,0.205],[0.614,0.146],[0.621,0.075],[0.595,0.025],[0.54,0.006],[0.468,0.0],[0.399,0.008],[0.319,0.006],[0.349,0.069],[0.428,0.125],[0.503,0.171],[0.449,0.193],[0.465,0.121],[0.532,0.078],[0.605,0.065],[0.658,0.093],[0.691,0.138],[0.681,0.203],[0.657,0.269],[0.629,0.341],[0.625,0.408],[0.587,0.517],[0.61,0.586],[0.656,0.642],[0.718,0.65],[0.787,0.629],[0.874,0.572],[0.814,0.53],[0.738,0.506],[0.652,0.432],[0.685,0.452],[0.721,0.552],[0.694,0.62],[0.634,0.649],[0.565,0.66],[0.523,0.629],[0.485,0.611],[0.467,0.638],[0.427,0.605],[0.397,0.543],[0.382,0.471],[0.342,0.449],[0.317,0.425],[0.278,0.436],[0.224,0.476],[0.17,0.53],[0.112,0.558],[0.058,0.569],[0.0,0.545]],"apo":[[0.08,0.377],[0.069,0.461],[0.08,0.532],[0.124,0.593],[0.173,0.601],[0.238,0.577],[0.301,0.543],[0.361,0.504],[0.396,0.491],[0.522,0.459],[0.57,0.43],[0.639,0.413],[0.748,0.413],[0.781,0.382],[0.846,0.37],[0.911,0.373],[0.95,0.398],[0.974,0.452],[0.98,0.525],[0.999,0.614],[0.929,0.601],[0.861,0.53],[0.772,0.49],[0.794,0.509],[0.871,0.461],[0.895,0.387],[0.879,0.334],[0.825,0.319],[0.757,0.331],[0.687,0.349],[0.624,0.378],[0.557,0.363],[0.464,0.434],[0.384,0.41],[0.336,0.362],[0.331,0.297],[0.35,0.228],[0.371,0.146],[0.404,0.201],[0.471,0.249],[0.552,0.331],[0.551,0.269],[0.446,0.244],[0.384,0.297],[0.361,0.368],[0.371,0.426],[0.409,0.472],[0.475,0.503],[0.521,0.528],[0.553,0.552],[0.548,0.592],[0.53,0.659],[0.519,0.719],[0.462,0.745],[0.394,0.717],[0.361,0.671],[0.37,0.618],[0.405,0.572],[0.464,0.525],[0.517,0.481],[0.511,0.45],[0.585,0.381],[0.597,0.308],[0.59,0.203],[0.606,0.144],[0.615,0.066],[0.585,0.016],[0.537,0.011],[0.462,0.01],[0.394,0.011],[0.31,0.014],[0.341,0.066],[0.429,0.125],[0.496,0.17],[0.447,0.198],[0.463,0.13],[0.536,0.079],[0.608,0.07],[0.665,0.089],[0.689,0.143],[0.674,0.198],[0.663,0.257],[0.625,0.336],[0.64,0.407],[0.587,0.508],[0.614,0.582],[0.662,0.632],[0.724,0.653],[0.788,0.627],[0.874,0.574],[0.818,0.523],[0.734,0.505],[0.651,0.43],[0.683,0.458],[0.721,0.557],[0.694,0.624],[0.636,0.649],[0.57,0.662],[0.523,0.639],[0.471,0.682],[0.465,0.642],[0.428,0.593],[0.393,0.53],[0.367,0.459],[0.327,0.453],[0.315,0.433],[0.271,0.448],[0.222,0.485],[0.145,0.523]]},"method":"X-ray","resolution":3.45,"rna_type":"Enzyme cofactor riboswitch","rna_group":"Riboswitch","num_chains":1,"total_rna_len":107,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["junction","hairpin loop","stem"],"rmsd":2.31,"host_chain_rmsd":2.31,"pocket_rmsd":1.43,"lig_bsa":535.9,"ligand_burial":0.869,"tm_score":0.857,"rg_apo":21.87,"rg_holo":21.81,"rg_delta":-0.06,"bp_rewire_src":"dssr","bp_formed":10,"bp_broken":4,"bp_conserved":42,"bp_formed_wc":4,"bp_broken_wc":0,"bp_conserved_wc":29,"maxd":14.4,"water":0,"hbonds":9,"mw":456.3,"logp":-1.61,"thumb_img":true,"thumb_v":1785444660,"apo_alts":[{"pdb":"6WJR","rmsd":2.32,"host_chain_rmsd":2.32,"apo_chain":"X","apo_len":111,"identity":100,"global_identity":100,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.863,"rg_delta":0.2,"pocket_rmsd":1.4,"maxd":14.3,"bp_formed":4,"bp_broken":3,"bp_conserved":48}],"n_apo_copies":0},{"id":"3F2X_FMN_X_B_200_pocket","title":"3F2X (FMN) vs 6WJS (apo)","struct_title":"Crystal structure of the FMN riboswitch bound to FMN, Cs+ soak.","holo_pdb":"3F2X","ligand":"FMN","holo_chain":"X","holo_rna_chain":"X","lig_auth_chain":"X","nearest_rna_chain":"X","lig_resseq":"200","apo_pdb":"6WJS","apo_chain":"X","holo_len":109,"apo_len":109,"pocket_size":27,"thumb":{"holo":[[0.067,0.443],[0.063,0.526],[0.083,0.585],[0.129,0.614],[0.188,0.606],[0.247,0.577],[0.319,0.554],[0.357,0.497],[0.398,0.49],[0.519,0.459],[0.574,0.421],[0.646,0.414],[0.752,0.416],[0.775,0.373],[0.844,0.356],[0.899,0.369],[0.947,0.389],[0.973,0.442],[0.979,0.513],[0.998,0.605],[0.929,0.596],[0.864,0.52],[0.781,0.486],[0.796,0.509],[0.871,0.454],[0.894,0.385],[0.881,0.325],[0.825,0.315],[0.76,0.337],[0.691,0.356],[0.621,0.373],[0.556,0.352],[0.474,0.425],[0.399,0.41],[0.346,0.367],[0.336,0.298],[0.348,0.228],[0.366,0.143],[0.411,0.2],[0.468,0.251],[0.548,0.325],[0.557,0.277],[0.452,0.244],[0.395,0.292],[0.375,0.362],[0.388,0.426],[0.428,0.48],[0.483,0.531],[0.541,0.567],[0.551,0.592],[0.514,0.606],[0.452,0.625],[0.38,0.651],[0.33,0.56],[0.389,0.539],[0.47,0.528],[0.529,0.506],[0.528,0.448],[0.59,0.384],[0.602,0.314],[0.591,0.205],[0.611,0.148],[0.619,0.076],[0.593,0.027],[0.537,0.005],[0.466,0.0],[0.398,0.014],[0.316,0.011],[0.347,0.073],[0.425,0.125],[0.504,0.174],[0.448,0.196],[0.462,0.122],[0.528,0.078],[0.601,0.065],[0.655,0.095],[0.689,0.138],[0.682,0.201],[0.657,0.268],[0.63,0.342],[0.624,0.41],[0.591,0.518],[0.615,0.587],[0.662,0.644],[0.727,0.65],[0.789,0.622],[0.877,0.567],[0.818,0.522],[0.738,0.504],[0.655,0.431],[0.685,0.453],[0.725,0.55],[0.698,0.621],[0.64,0.653],[0.573,0.664],[0.529,0.636],[0.491,0.661],[0.472,0.647],[0.435,0.606],[0.406,0.542],[0.382,0.472],[0.34,0.453],[0.319,0.429],[0.279,0.439],[0.225,0.479],[0.172,0.529],[0.11,0.558],[0.051,0.57],[0.0,0.544]],"apo":[[0.081,0.382],[0.072,0.466],[0.083,0.537],[0.127,0.598],[0.176,0.605],[0.24,0.581],[0.303,0.547],[0.363,0.508],[0.398,0.494],[0.523,0.461],[0.571,0.432],[0.639,0.414],[0.748,0.412],[0.781,0.382],[0.845,0.369],[0.911,0.371],[0.95,0.396],[0.974,0.449],[0.981,0.523],[1.0,0.611],[0.93,0.598],[0.861,0.528],[0.773,0.49],[0.795,0.508],[0.871,0.459],[0.895,0.385],[0.878,0.332],[0.824,0.318],[0.756,0.331],[0.687,0.35],[0.624,0.379],[0.558,0.364],[0.465,0.436],[0.385,0.412],[0.337,0.364],[0.332,0.3],[0.35,0.231],[0.369,0.149],[0.403,0.204],[0.47,0.251],[0.552,0.332],[0.551,0.27],[0.446,0.245],[0.385,0.298],[0.362,0.37],[0.373,0.427],[0.411,0.474],[0.477,0.504],[0.523,0.528],[0.555,0.552],[0.551,0.591],[0.533,0.658],[0.523,0.718],[0.466,0.745],[0.398,0.717],[0.365,0.671],[0.374,0.618],[0.408,0.571],[0.467,0.524],[0.519,0.48],[0.513,0.45],[0.586,0.381],[0.597,0.308],[0.589,0.203],[0.605,0.144],[0.613,0.066],[0.583,0.017],[0.534,0.013],[0.46,0.013],[0.391,0.015],[0.308,0.018],[0.339,0.07],[0.427,0.127],[0.496,0.171],[0.447,0.2],[0.461,0.133],[0.534,0.081],[0.606,0.072],[0.663,0.089],[0.687,0.143],[0.673,0.198],[0.662,0.256],[0.625,0.335],[0.641,0.407],[0.589,0.507],[0.616,0.582],[0.665,0.631],[0.727,0.652],[0.79,0.625],[0.876,0.572],[0.819,0.521],[0.735,0.504],[0.652,0.43],[0.684,0.458],[0.722,0.556],[0.696,0.624],[0.638,0.648],[0.573,0.662],[0.526,0.64],[0.473,0.684],[0.468,0.643],[0.43,0.594],[0.395,0.532],[0.368,0.461],[0.329,0.456],[0.316,0.437],[0.272,0.452],[0.224,0.49],[0.146,0.529]]},"method":"X-ray","resolution":3.11,"rna_type":"Enzyme cofactor riboswitch","rna_group":"Riboswitch","num_chains":1,"total_rna_len":107,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["junction","hairpin loop","stem"],"rmsd":2.26,"host_chain_rmsd":2.26,"pocket_rmsd":1.4,"lig_bsa":539.1,"ligand_burial":0.851,"tm_score":0.87,"rg_apo":21.87,"rg_holo":21.92,"rg_delta":0.05,"bp_rewire_src":"dssr","bp_formed":10,"bp_broken":4,"bp_conserved":42,"bp_formed_wc":4,"bp_broken_wc":0,"bp_conserved_wc":29,"maxd":15.0,"water":0,"hbonds":9,"mw":456.3,"logp":-1.61,"thumb_img":true,"thumb_v":1785444661,"apo_alts":[{"pdb":"6WJR","rmsd":2.28,"host_chain_rmsd":2.28,"apo_chain":"X","apo_len":111,"identity":100,"global_identity":100,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.876,"rg_delta":0.33,"pocket_rmsd":1.35,"maxd":14.9,"bp_formed":3,"bp_broken":2,"bp_conserved":49}],"n_apo_copies":0},{"id":"3F2Y_FMN_X_B_200_pocket","title":"3F2Y (FMN) vs 6WJS (apo)","struct_title":"Crystal structure of the FMN riboswitch bound to FMN, Mn2+ soak.","holo_pdb":"3F2Y","ligand":"FMN","holo_chain":"X","holo_rna_chain":"X","lig_auth_chain":"X","nearest_rna_chain":"X","lig_resseq":"200","apo_pdb":"6WJS","apo_chain":"X","holo_len":109,"apo_len":109,"pocket_size":29,"thumb":{"holo":[[0.073,0.434],[0.07,0.516],[0.092,0.574],[0.136,0.602],[0.194,0.598],[0.251,0.571],[0.325,0.546],[0.362,0.491],[0.404,0.484],[0.521,0.451],[0.573,0.414],[0.647,0.406],[0.752,0.409],[0.775,0.365],[0.843,0.35],[0.897,0.361],[0.944,0.381],[0.97,0.434],[0.977,0.504],[0.996,0.596],[0.926,0.586],[0.863,0.511],[0.782,0.477],[0.794,0.5],[0.87,0.446],[0.893,0.378],[0.879,0.322],[0.826,0.31],[0.76,0.331],[0.693,0.349],[0.623,0.366],[0.558,0.346],[0.475,0.42],[0.403,0.403],[0.35,0.361],[0.339,0.291],[0.354,0.222],[0.373,0.137],[0.415,0.194],[0.471,0.247],[0.55,0.32],[0.559,0.272],[0.457,0.237],[0.398,0.288],[0.382,0.356],[0.389,0.422],[0.429,0.475],[0.487,0.524],[0.543,0.558],[0.55,0.582],[0.517,0.597],[0.456,0.61],[0.373,0.636],[0.338,0.543],[0.396,0.526],[0.481,0.518],[0.536,0.496],[0.538,0.456],[0.591,0.375],[0.604,0.307],[0.592,0.201],[0.612,0.141],[0.618,0.073],[0.593,0.024],[0.539,0.003],[0.466,0.0],[0.399,0.01],[0.319,0.006],[0.348,0.069],[0.429,0.122],[0.507,0.168],[0.451,0.191],[0.465,0.117],[0.53,0.074],[0.601,0.061],[0.655,0.089],[0.689,0.133],[0.682,0.196],[0.66,0.262],[0.63,0.334],[0.624,0.402],[0.592,0.51],[0.616,0.577],[0.663,0.632],[0.726,0.64],[0.792,0.611],[0.876,0.554],[0.817,0.51],[0.738,0.496],[0.656,0.422],[0.685,0.444],[0.726,0.541],[0.701,0.609],[0.644,0.642],[0.573,0.656],[0.534,0.626],[0.499,0.654],[0.476,0.639],[0.438,0.6],[0.408,0.539],[0.388,0.464],[0.348,0.444],[0.324,0.43],[0.283,0.436],[0.231,0.473],[0.176,0.522],[0.115,0.551],[0.058,0.559],[0.0,0.535]],"apo":[[0.086,0.376],[0.077,0.46],[0.088,0.53],[0.132,0.59],[0.181,0.598],[0.245,0.574],[0.307,0.54],[0.366,0.5],[0.401,0.487],[0.525,0.454],[0.573,0.424],[0.641,0.407],[0.749,0.405],[0.782,0.375],[0.845,0.362],[0.911,0.364],[0.95,0.388],[0.974,0.441],[0.98,0.514],[1.0,0.602],[0.93,0.589],[0.862,0.52],[0.774,0.482],[0.796,0.5],[0.872,0.451],[0.895,0.377],[0.878,0.325],[0.824,0.311],[0.757,0.324],[0.688,0.343],[0.626,0.372],[0.56,0.357],[0.468,0.429],[0.389,0.405],[0.341,0.358],[0.335,0.293],[0.353,0.225],[0.372,0.144],[0.405,0.199],[0.473,0.245],[0.554,0.325],[0.553,0.263],[0.448,0.239],[0.388,0.292],[0.366,0.363],[0.376,0.42],[0.414,0.466],[0.48,0.497],[0.526,0.52],[0.558,0.543],[0.553,0.582],[0.536,0.649],[0.526,0.709],[0.47,0.736],[0.402,0.709],[0.369,0.663],[0.378,0.61],[0.411,0.563],[0.47,0.516],[0.521,0.473],[0.516,0.442],[0.588,0.374],[0.599,0.301],[0.591,0.197],[0.606,0.138],[0.614,0.061],[0.584,0.012],[0.536,0.008],[0.462,0.008],[0.394,0.01],[0.311,0.013],[0.342,0.065],[0.43,0.122],[0.498,0.165],[0.449,0.194],[0.463,0.128],[0.536,0.076],[0.607,0.066],[0.664,0.084],[0.688,0.137],[0.674,0.192],[0.664,0.25],[0.627,0.328],[0.643,0.399],[0.591,0.499],[0.618,0.573],[0.667,0.622],[0.729,0.643],[0.792,0.616],[0.876,0.563],[0.82,0.512],[0.737,0.496],[0.653,0.423],[0.685,0.451],[0.723,0.548],[0.698,0.615],[0.64,0.64],[0.575,0.653],[0.528,0.632],[0.477,0.675],[0.471,0.635],[0.433,0.586],[0.399,0.524],[0.372,0.454],[0.332,0.449],[0.32,0.43],[0.276,0.445],[0.228,0.483],[0.151,0.522]]},"method":"X-ray","resolution":3.2,"rna_type":"Enzyme cofactor riboswitch","rna_group":"Riboswitch","num_chains":1,"total_rna_len":107,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["junction","hairpin loop","stem"],"rmsd":2.26,"host_chain_rmsd":2.26,"pocket_rmsd":1.42,"lig_bsa":542.4,"ligand_burial":0.864,"tm_score":0.865,"rg_apo":21.87,"rg_holo":21.79,"rg_delta":-0.08,"bp_rewire_src":"dssr","bp_formed":11,"bp_broken":4,"bp_conserved":42,"bp_formed_wc":4,"bp_broken_wc":0,"bp_conserved_wc":29,"maxd":14.8,"water":0,"hbonds":9,"mw":456.3,"logp":-1.61,"thumb_img":true,"thumb_v":1785444663,"apo_alts":[{"pdb":"6WJR","rmsd":2.28,"host_chain_rmsd":2.28,"apo_chain":"X","apo_len":111,"identity":100,"global_identity":100,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.869,"rg_delta":0.19,"pocket_rmsd":1.4,"maxd":14.7,"bp_formed":4,"bp_broken":2,"bp_conserved":49}],"n_apo_copies":0},{"id":"3F30_FMN_X_B_200_pocket","title":"3F30 (FMN) vs 6WJS (apo)","struct_title":"Crystal structure of the FMN riboswitch bound to FMN, cobalt hexammine soak.","holo_pdb":"3F30","ligand":"FMN","holo_chain":"X","holo_rna_chain":"X","lig_auth_chain":"X","nearest_rna_chain":"X","lig_resseq":"200","apo_pdb":"6WJS","apo_chain":"X","holo_len":109,"apo_len":109,"pocket_size":27,"thumb":{"holo":[[0.087,0.431],[0.079,0.509],[0.093,0.572],[0.138,0.595],[0.194,0.594],[0.254,0.572],[0.324,0.553],[0.362,0.496],[0.402,0.493],[0.521,0.458],[0.577,0.419],[0.651,0.412],[0.756,0.414],[0.783,0.369],[0.849,0.352],[0.91,0.356],[0.948,0.39],[0.973,0.447],[0.976,0.517],[0.997,0.609],[0.93,0.598],[0.863,0.525],[0.781,0.49],[0.797,0.514],[0.875,0.46],[0.902,0.387],[0.884,0.326],[0.829,0.316],[0.766,0.338],[0.697,0.357],[0.626,0.373],[0.562,0.351],[0.48,0.422],[0.408,0.405],[0.348,0.362],[0.343,0.287],[0.361,0.219],[0.384,0.135],[0.427,0.195],[0.48,0.248],[0.555,0.326],[0.567,0.28],[0.461,0.239],[0.401,0.285],[0.387,0.353],[0.394,0.422],[0.431,0.479],[0.491,0.528],[0.546,0.563],[0.552,0.59],[0.52,0.605],[0.45,0.624],[0.372,0.655],[0.336,0.556],[0.396,0.538],[0.474,0.526],[0.523,0.503],[0.531,0.468],[0.595,0.38],[0.608,0.314],[0.603,0.208],[0.623,0.149],[0.632,0.079],[0.611,0.029],[0.558,0.009],[0.487,0.0],[0.418,0.008],[0.335,0.0],[0.362,0.068],[0.441,0.12],[0.516,0.169],[0.462,0.191],[0.482,0.12],[0.547,0.078],[0.62,0.071],[0.673,0.099],[0.698,0.143],[0.69,0.206],[0.664,0.272],[0.633,0.342],[0.626,0.41],[0.593,0.518],[0.617,0.585],[0.662,0.64],[0.722,0.65],[0.785,0.624],[0.874,0.572],[0.819,0.529],[0.74,0.506],[0.657,0.431],[0.685,0.452],[0.723,0.55],[0.695,0.621],[0.64,0.65],[0.574,0.664],[0.531,0.633],[0.5,0.669],[0.473,0.644],[0.434,0.607],[0.408,0.545],[0.392,0.47],[0.352,0.447],[0.326,0.427],[0.287,0.439],[0.233,0.475],[0.176,0.529],[0.114,0.56],[0.059,0.556],[0.0,0.527]],"apo":[[0.09,0.371],[0.079,0.455],[0.089,0.525],[0.131,0.587],[0.181,0.595],[0.245,0.572],[0.308,0.539],[0.368,0.501],[0.403,0.489],[0.528,0.458],[0.577,0.43],[0.645,0.414],[0.753,0.415],[0.787,0.385],[0.851,0.374],[0.916,0.377],[0.954,0.403],[0.978,0.456],[0.982,0.529],[1.0,0.618],[0.931,0.603],[0.864,0.532],[0.777,0.492],[0.798,0.511],[0.875,0.464],[0.9,0.391],[0.884,0.338],[0.831,0.323],[0.763,0.334],[0.694,0.352],[0.631,0.379],[0.565,0.363],[0.472,0.433],[0.393,0.408],[0.346,0.359],[0.341,0.294],[0.361,0.227],[0.382,0.145],[0.414,0.201],[0.48,0.249],[0.56,0.331],[0.56,0.27],[0.456,0.243],[0.394,0.294],[0.37,0.365],[0.379,0.422],[0.417,0.469],[0.482,0.501],[0.527,0.526],[0.559,0.55],[0.553,0.589],[0.534,0.655],[0.523,0.715],[0.466,0.74],[0.399,0.712],[0.367,0.665],[0.376,0.613],[0.411,0.567],[0.47,0.521],[0.523,0.479],[0.519,0.448],[0.593,0.381],[0.605,0.309],[0.6,0.204],[0.616,0.146],[0.625,0.068],[0.597,0.018],[0.549,0.014],[0.475,0.012],[0.406,0.012],[0.323,0.013],[0.354,0.066],[0.44,0.125],[0.507,0.17],[0.458,0.198],[0.474,0.131],[0.548,0.081],[0.619,0.073],[0.675,0.092],[0.698,0.146],[0.683,0.201],[0.671,0.258],[0.633,0.336],[0.647,0.407],[0.593,0.506],[0.619,0.581],[0.666,0.631],[0.727,0.653],[0.791,0.627],[0.877,0.577],[0.822,0.524],[0.739,0.506],[0.657,0.431],[0.688,0.459],[0.725,0.558],[0.697,0.624],[0.639,0.648],[0.574,0.66],[0.528,0.637],[0.475,0.679],[0.47,0.639],[0.433,0.59],[0.4,0.527],[0.375,0.456],[0.335,0.449],[0.323,0.43],[0.28,0.444],[0.231,0.481],[0.153,0.518]]},"method":"X-ray","resolution":3.15,"rna_type":"Enzyme cofactor riboswitch","rna_group":"Riboswitch","num_chains":1,"total_rna_len":107,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["junction","hairpin loop","stem"],"rmsd":2.21,"host_chain_rmsd":2.21,"pocket_rmsd":1.43,"lig_bsa":528.3,"ligand_burial":0.861,"tm_score":0.866,"rg_apo":21.87,"rg_holo":21.84,"rg_delta":-0.03,"bp_rewire_src":"dssr","bp_formed":10,"bp_broken":4,"bp_conserved":42,"bp_formed_wc":4,"bp_broken_wc":0,"bp_conserved_wc":28,"maxd":14.4,"water":0,"hbonds":9,"mw":456.3,"logp":-1.61,"thumb_img":true,"thumb_v":1785444664,"apo_alts":[{"pdb":"6WJR","rmsd":2.25,"host_chain_rmsd":2.25,"apo_chain":"X","apo_len":111,"identity":100,"global_identity":100,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.862,"rg_delta":0.25,"pocket_rmsd":1.38,"maxd":14.2,"bp_formed":3,"bp_broken":2,"bp_conserved":49}],"n_apo_copies":0},{"id":"3GCA_PQ0_A_B_34_pocket","title":"3GCA (PQ0) vs 3Q51 (apo)","struct_title":"The structural basis for recognition of the preQ0 metabolite by an unusually small riboswitch aptamer domain","holo_pdb":"3GCA","ligand":"PQ0","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"34","apo_pdb":"3Q51","apo_chain":"A","holo_len":33,"apo_len":32,"pocket_size":17,"thumb":{"holo":[[0.688,0.596],[0.72,0.52],[0.719,0.406],[0.653,0.306],[0.552,0.207],[0.472,0.052],[0.349,0.07],[0.236,0.138],[0.094,0.197],[0.158,0.292],[0.316,0.355],[0.353,0.563],[0.252,0.548],[0.259,0.48],[0.312,0.36],[0.401,0.242],[0.528,0.179],[0.661,0.186],[0.764,0.262],[0.848,0.385],[0.899,0.473],[1.0,0.312],[0.83,0.351],[0.833,0.123],[0.758,0.009],[0.641,0.004],[0.518,0.012],[0.377,0.021],[0.283,0.095],[0.224,0.206],[0.174,0.328],[0.109,0.469],[0.04,0.432]],"apo":[[0.703,0.599],[0.736,0.525],[0.725,0.411],[0.653,0.307],[0.551,0.208],[0.472,0.063],[0.348,0.08],[0.23,0.15],[0.087,0.199],[0.144,0.3],[0.317,0.358],[0.292,0.531],[0.362,0.386],[0.354,0.444],[0.401,0.256],[0.531,0.183],[0.664,0.185],[0.769,0.26],[0.862,0.378],[0.903,0.472],[0.996,0.318],[0.826,0.349],[0.827,0.121],[0.754,0.005],[0.636,0.0],[0.507,0.008],[0.374,0.02],[0.289,0.093],[0.226,0.219],[0.164,0.329],[0.068,0.451],[0.0,0.422]]},"method":"X-ray","resolution":2.75,"rna_type":"Purine-compound riboswitch","rna_group":"Riboswitch","num_chains":1,"total_rna_len":33,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["internal loop","hairpin loop","stem"],"rmsd":1.65,"host_chain_rmsd":1.65,"pocket_rmsd":2.2,"lig_bsa":286.8,"ligand_burial":0.882,"tm_score":0.67,"rg_apo":12.93,"rg_holo":12.85,"rg_delta":-0.08,"bp_rewire_src":"dssr","bp_formed":3,"bp_broken":2,"bp_conserved":16,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":7,"maxd":6.8,"water":0,"hbonds":4,"mw":175.2,"logp":-0.29,"thumb_img":true,"thumb_v":1785389620,"apo_alts":[],"n_apo_copies":0},{"id":"3GS1_S9L_C_G_14_pocket","title":"3GS1 (S9L) vs 1ZFV (apo)","struct_title":"An all-RNA Hairpin Ribozyme with mutation A38N1dA","holo_pdb":"3GS1","ligand":"S9L","holo_chain":"C","holo_rna_chain":"C","lig_auth_chain":"C","nearest_rna_chain":"C","lig_resseq":"14","apo_pdb":"1ZFV","apo_chain":"C","holo_len":17,"apo_len":17,"pocket_size":7,"thumb":{"holo":[[0.0,0.331],[0.003,0.287],[0.029,0.192],[0.074,0.087],[0.147,0.013],[0.236,0.002],[0.323,0.061],[0.419,0.09],[0.478,0.178],[0.537,0.268],[0.596,0.319],[0.654,0.329],[0.723,0.278],[0.801,0.198],[0.874,0.125],[0.937,0.077],[1.0,0.106]],"apo":[[0.006,0.335],[0.012,0.291],[0.033,0.195],[0.079,0.085],[0.148,0.01],[0.234,0.0],[0.326,0.058],[0.421,0.086],[0.483,0.17],[0.537,0.268],[0.592,0.319],[0.652,0.331],[0.719,0.277],[0.795,0.199],[0.871,0.129],[0.931,0.081],[0.993,0.104]]},"method":"X-ray","resolution":2.85,"rna_type":"Hairpin ribozyme","rna_group":"Catalytic (ribozyme)","num_chains":3,"total_rna_len":61,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["stem"],"rmsd":0.43,"host_chain_rmsd":0.31,"pocket_rmsd":0.3,"lig_bsa":153.3,"ligand_burial":0.397,"tm_score":0.737,"rg_apo":16.91,"rg_holo":17.07,"rg_delta":0.16,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":1,"bp_conserved":16,"bp_formed_wc":0,"bp_broken_wc":1,"bp_conserved_wc":10,"maxd":1.3,"water":0,"hbonds":0,"mw":230.2,"logp":-0.88,"thumb_img":true,"thumb_v":1785451618,"apo_alts":[{"pdb":"1X9K","rmsd":0.51,"host_chain_rmsd":0.51,"apo_chain":"C","apo_len":17,"identity":100,"global_identity":100,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.554,"rg_delta":0.03,"pocket_rmsd":1.36,"maxd":3.2,"bp_formed":0,"bp_broken":0,"bp_conserved":16},{"pdb":"1ZFX","rmsd":0.29,"host_chain_rmsd":0.29,"apo_chain":"C","apo_len":17,"identity":100,"global_identity":100,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.768,"rg_delta":0.18,"pocket_rmsd":0.35,"maxd":0.9,"bp_formed":0,"bp_broken":1,"bp_conserved":16},{"pdb":"2BCZ","rmsd":0.27,"host_chain_rmsd":0.27,"apo_chain":"C","apo_len":17,"identity":100,"global_identity":100,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.768,"rg_delta":-0.01,"pocket_rmsd":0.2,"maxd":0.5,"bp_formed":0,"bp_broken":1,"bp_conserved":16}],"n_apo_copies":0},{"id":"3GS8_S9L_B_F_14_pocket","title":"3GS8 (S9L) vs 1ZFV (apo)","struct_title":"An all-RNA hairpin ribozyme A38N1dA38 variant with a transition-state mimic substrate strand","holo_pdb":"3GS8","ligand":"S9L","holo_chain":"B","holo_rna_chain":"B","lig_auth_chain":"B","nearest_rna_chain":"B","lig_resseq":"14","apo_pdb":"1ZFV","apo_chain":"B","holo_len":12,"apo_len":12,"pocket_size":7,"thumb":{"holo":[[0.011,0.547],[0.013,0.439],[0.06,0.272],[0.161,0.132],[0.305,0.019],[0.451,0.02],[0.618,0.109],[0.732,0.188],[0.864,0.303],[0.935,0.378],[0.979,0.4],[0.993,0.326]],"apo":[[0.0,0.554],[0.006,0.444],[0.066,0.279],[0.167,0.128],[0.297,0.018],[0.451,0.0],[0.599,0.088],[0.731,0.182],[0.862,0.303],[0.942,0.381],[0.983,0.408],[1.0,0.328]]},"method":"X-ray","resolution":2.85,"rna_type":"Hairpin ribozyme","rna_group":"Catalytic (ribozyme)","num_chains":3,"total_rna_len":61,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":92,"pocket_motifs":[],"rmsd":0.71,"host_chain_rmsd":0.39,"pocket_rmsd":0.52,"lig_bsa":152.3,"ligand_burial":0.389,"tm_score":0.606,"rg_apo":13.29,"rg_holo":13.22,"rg_delta":-0.07,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":1,"bp_conserved":16,"bp_formed_wc":0,"bp_broken_wc":1,"bp_conserved_wc":10,"maxd":1.6,"water":0,"hbonds":0,"mw":230.2,"logp":-0.88,"thumb_img":true,"thumb_v":1785451619,"apo_alts":[{"pdb":"1X9K","rmsd":1.97,"host_chain_rmsd":1.97,"apo_chain":"B","apo_len":13,"identity":100,"global_identity":54,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.359,"rg_delta":-1.03,"pocket_rmsd":1.44,"maxd":3.2,"bp_formed":0,"bp_broken":0,"bp_conserved":16},{"pdb":"1ZFX","rmsd":0.6,"host_chain_rmsd":0.6,"apo_chain":"B","apo_len":12,"identity":100,"global_identity":92,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.5,"rg_delta":0.15,"pocket_rmsd":0.47,"maxd":1.1,"bp_formed":0,"bp_broken":1,"bp_conserved":16},{"pdb":"2BCZ","rmsd":0.36,"host_chain_rmsd":0.36,"apo_chain":"B","apo_len":12,"identity":100,"global_identity":92,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.61,"rg_delta":0.07,"pocket_rmsd":0.24,"maxd":0.6,"bp_formed":0,"bp_broken":1,"bp_conserved":16}],"n_apo_copies":0},{"id":"3GX2_SFG_A_B_301_pocket","title":"3GX2 (SFG) vs 3IQP (apo)","struct_title":"TteSAM-I riboswitch variant A94GU34C bound to sinefungin","holo_pdb":"3GX2","ligand":"SFG","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"301","apo_pdb":"3IQP","apo_chain":"A","holo_len":94,"apo_len":94,"pocket_size":25,"thumb":{"holo":[[0.387,0.176],[0.433,0.103],[0.445,0.041],[0.438,0.018],[0.425,0.048],[0.413,0.1],[0.423,0.177],[0.459,0.254],[0.512,0.327],[0.402,0.324],[0.334,0.357],[0.279,0.41],[0.211,0.525],[0.224,0.629],[0.138,0.595],[0.1,0.6],[0.115,0.596],[0.183,0.619],[0.244,0.662],[0.344,0.645],[0.381,0.594],[0.406,0.536],[0.461,0.482],[0.473,0.371],[0.549,0.38],[0.634,0.413],[0.677,0.465],[0.655,0.51],[0.608,0.544],[0.533,0.566],[0.446,0.583],[0.393,0.638],[0.318,0.739],[0.333,0.75],[0.296,0.682],[0.343,0.598],[0.308,0.529],[0.227,0.5],[0.149,0.489],[0.101,0.49],[0.092,0.486],[0.138,0.463],[0.194,0.413],[0.256,0.354],[0.269,0.279],[0.248,0.196],[0.299,0.15],[0.222,0.106],[0.136,0.079],[0.087,0.065],[0.063,0.008],[0.047,0.084],[0.0,0.153],[0.039,0.18],[0.079,0.18],[0.146,0.185],[0.218,0.222],[0.274,0.27],[0.302,0.334],[0.294,0.417],[0.415,0.51],[0.493,0.488],[0.531,0.356],[0.498,0.326],[0.534,0.448],[0.617,0.432],[0.662,0.397],[0.689,0.352],[0.746,0.249],[0.783,0.206],[0.814,0.18],[0.846,0.207],[0.88,0.275],[0.911,0.35],[1.0,0.417],[0.929,0.452],[0.859,0.479],[0.811,0.423],[0.783,0.355],[0.751,0.278],[0.723,0.203],[0.696,0.166],[0.67,0.169],[0.639,0.212],[0.576,0.258],[0.5,0.284],[0.42,0.281],[0.355,0.235],[0.315,0.161],[0.303,0.085],[0.314,0.017],[0.337,0.002],[0.363,0.007],[0.353,0.049]],"apo":[[0.395,0.173],[0.43,0.11],[0.443,0.044],[0.435,0.026],[0.429,0.051],[0.416,0.101],[0.419,0.177],[0.458,0.254],[0.493,0.323],[0.386,0.307],[0.317,0.348],[0.269,0.401],[0.233,0.516],[0.167,0.573],[0.119,0.592],[0.098,0.606],[0.124,0.603],[0.191,0.62],[0.254,0.667],[0.347,0.646],[0.382,0.598],[0.408,0.535],[0.458,0.482],[0.475,0.376],[0.547,0.388],[0.644,0.424],[0.678,0.481],[0.663,0.518],[0.608,0.546],[0.533,0.565],[0.446,0.584],[0.398,0.641],[0.339,0.755],[0.34,0.748],[0.306,0.692],[0.349,0.603],[0.312,0.536],[0.237,0.511],[0.152,0.498],[0.094,0.497],[0.103,0.488],[0.137,0.468],[0.19,0.417],[0.245,0.356],[0.241,0.285],[0.317,0.229],[0.297,0.156],[0.233,0.106],[0.155,0.073],[0.101,0.062],[0.068,0.0],[0.059,0.074],[0.013,0.147],[0.05,0.17],[0.078,0.169],[0.141,0.178],[0.213,0.21],[0.263,0.269],[0.296,0.33],[0.291,0.416],[0.411,0.512],[0.486,0.489],[0.529,0.363],[0.491,0.334],[0.538,0.456],[0.622,0.432],[0.66,0.396],[0.685,0.349],[0.727,0.247],[0.771,0.201],[0.804,0.177],[0.841,0.205],[0.878,0.266],[0.917,0.329],[0.996,0.411],[0.927,0.447],[0.859,0.472],[0.811,0.416],[0.781,0.347],[0.749,0.269],[0.723,0.199],[0.688,0.168],[0.663,0.177],[0.63,0.211],[0.571,0.267],[0.499,0.29],[0.425,0.286],[0.361,0.236],[0.316,0.159],[0.303,0.082],[0.314,0.019],[0.336,0.005],[0.366,0.012],[0.362,0.046]]},"method":"X-ray","resolution":2.9,"rna_type":"Enzyme cofactor riboswitch","rna_group":"Riboswitch","num_chains":1,"total_rna_len":94,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":99,"global_identity":99,"pocket_motifs":["junction","internal loop","stem"],"rmsd":1.21,"host_chain_rmsd":1.21,"pocket_rmsd":1.35,"lig_bsa":484.0,"ligand_burial":0.878,"tm_score":0.928,"rg_apo":21.0,"rg_holo":21.06,"rg_delta":0.06,"bp_rewire_src":"dssr","bp_formed":3,"bp_broken":4,"bp_conserved":41,"bp_formed_wc":0,"bp_broken_wc":1,"bp_conserved_wc":29,"maxd":5.3,"water":0,"hbonds":7,"mw":381.4,"logp":-2.06,"thumb_img":true,"thumb_v":1785389621,"apo_alts":[],"n_apo_copies":0},{"id":"3GX3_SAH_A_B_301_pocket","title":"3GX3 (SAH) vs 3IQP (apo)","struct_title":"Crystal structure of the T. tengcongensis SAM-I riboswitch variant U34C/A94G bound with SAH","holo_pdb":"3GX3","ligand":"SAH","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"301","apo_pdb":"3IQP","apo_chain":"A","holo_len":94,"apo_len":94,"pocket_size":25,"thumb":{"holo":[[0.38,0.177],[0.427,0.102],[0.441,0.042],[0.43,0.022],[0.423,0.049],[0.411,0.098],[0.417,0.178],[0.458,0.249],[0.506,0.316],[0.406,0.319],[0.332,0.352],[0.283,0.407],[0.222,0.521],[0.222,0.624],[0.137,0.581],[0.101,0.592],[0.12,0.591],[0.187,0.611],[0.247,0.658],[0.349,0.637],[0.376,0.589],[0.404,0.528],[0.46,0.476],[0.474,0.364],[0.549,0.373],[0.632,0.403],[0.677,0.463],[0.654,0.503],[0.607,0.538],[0.531,0.56],[0.446,0.577],[0.395,0.632],[0.327,0.74],[0.343,0.737],[0.293,0.675],[0.344,0.594],[0.307,0.522],[0.229,0.499],[0.151,0.488],[0.101,0.489],[0.093,0.482],[0.141,0.459],[0.196,0.41],[0.257,0.347],[0.271,0.273],[0.252,0.192],[0.294,0.154],[0.225,0.104],[0.143,0.079],[0.087,0.065],[0.06,0.01],[0.043,0.089],[0.0,0.159],[0.042,0.18],[0.081,0.178],[0.149,0.186],[0.222,0.221],[0.273,0.269],[0.301,0.332],[0.294,0.414],[0.417,0.507],[0.495,0.481],[0.535,0.354],[0.497,0.324],[0.532,0.442],[0.615,0.426],[0.662,0.39],[0.685,0.347],[0.731,0.238],[0.775,0.199],[0.807,0.179],[0.844,0.205],[0.875,0.275],[0.915,0.346],[1.0,0.41],[0.926,0.447],[0.859,0.474],[0.812,0.419],[0.781,0.351],[0.75,0.276],[0.723,0.202],[0.694,0.164],[0.666,0.168],[0.639,0.204],[0.575,0.252],[0.498,0.277],[0.419,0.278],[0.352,0.233],[0.314,0.161],[0.301,0.083],[0.313,0.018],[0.335,0.0],[0.36,0.009],[0.352,0.047]],"apo":[[0.393,0.17],[0.428,0.107],[0.441,0.042],[0.432,0.024],[0.426,0.049],[0.414,0.099],[0.417,0.175],[0.457,0.251],[0.492,0.319],[0.386,0.304],[0.318,0.345],[0.27,0.398],[0.235,0.513],[0.17,0.57],[0.122,0.588],[0.101,0.603],[0.126,0.599],[0.193,0.616],[0.255,0.663],[0.348,0.641],[0.383,0.593],[0.408,0.53],[0.458,0.478],[0.474,0.372],[0.545,0.384],[0.642,0.419],[0.677,0.475],[0.662,0.512],[0.607,0.54],[0.533,0.56],[0.447,0.579],[0.399,0.636],[0.341,0.75],[0.343,0.742],[0.308,0.687],[0.35,0.598],[0.313,0.532],[0.238,0.507],[0.154,0.495],[0.096,0.495],[0.105,0.486],[0.139,0.466],[0.192,0.415],[0.246,0.354],[0.242,0.283],[0.317,0.227],[0.296,0.154],[0.232,0.105],[0.155,0.073],[0.101,0.062],[0.069,0.001],[0.059,0.074],[0.014,0.147],[0.051,0.169],[0.078,0.169],[0.141,0.177],[0.213,0.209],[0.263,0.266],[0.296,0.327],[0.292,0.413],[0.412,0.508],[0.486,0.485],[0.529,0.359],[0.49,0.33],[0.538,0.451],[0.621,0.427],[0.659,0.391],[0.682,0.344],[0.724,0.242],[0.768,0.196],[0.801,0.173],[0.838,0.2],[0.875,0.26],[0.914,0.323],[0.992,0.404],[0.924,0.44],[0.856,0.466],[0.809,0.41],[0.779,0.342],[0.747,0.264],[0.72,0.195],[0.686,0.164],[0.66,0.173],[0.628,0.207],[0.569,0.263],[0.497,0.286],[0.424,0.282],[0.36,0.234],[0.315,0.157],[0.301,0.081],[0.312,0.018],[0.334,0.004],[0.364,0.011],[0.36,0.044]]},"method":"X-ray","resolution":2.7,"rna_type":"Enzyme cofactor riboswitch","rna_group":"Riboswitch","num_chains":1,"total_rna_len":94,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":99,"global_identity":99,"pocket_motifs":["junction","internal loop","stem"],"rmsd":1.24,"host_chain_rmsd":1.24,"pocket_rmsd":1.38,"lig_bsa":446.4,"ligand_burial":0.886,"tm_score":0.922,"rg_apo":21.0,"rg_holo":21.02,"rg_delta":0.02,"bp_rewire_src":"dssr","bp_formed":2,"bp_broken":5,"bp_conserved":40,"bp_formed_wc":0,"bp_broken_wc":1,"bp_conserved_wc":30,"maxd":5.8,"water":0,"hbonds":5,"mw":384.4,"logp":-1.44,"thumb_img":true,"thumb_v":1785389620,"apo_alts":[],"n_apo_copies":0},{"id":"3GX5_SAM_A_B_301_pocket","title":"3GX5 (SAM) vs 3IQP (apo)","struct_title":"Crystal structure of T. tencongensis SAM-I riboswitch variant A94G/U34 bound with SAM","holo_pdb":"3GX5","ligand":"SAM","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"301","apo_pdb":"3IQP","apo_chain":"A","holo_len":94,"apo_len":94,"pocket_size":25,"thumb":{"holo":[[0.382,0.176],[0.428,0.104],[0.44,0.044],[0.432,0.02],[0.423,0.051],[0.409,0.102],[0.419,0.182],[0.457,0.254],[0.507,0.317],[0.404,0.321],[0.331,0.358],[0.279,0.41],[0.224,0.531],[0.221,0.65],[0.132,0.584],[0.102,0.598],[0.117,0.601],[0.187,0.615],[0.247,0.672],[0.35,0.65],[0.381,0.601],[0.408,0.535],[0.463,0.483],[0.473,0.372],[0.551,0.379],[0.641,0.411],[0.679,0.464],[0.658,0.511],[0.608,0.545],[0.535,0.567],[0.445,0.585],[0.395,0.64],[0.33,0.747],[0.342,0.75],[0.295,0.683],[0.349,0.602],[0.307,0.532],[0.23,0.503],[0.152,0.492],[0.101,0.495],[0.093,0.49],[0.136,0.466],[0.196,0.417],[0.259,0.356],[0.269,0.277],[0.252,0.196],[0.29,0.154],[0.219,0.108],[0.137,0.078],[0.085,0.069],[0.058,0.012],[0.044,0.088],[0.0,0.161],[0.042,0.185],[0.076,0.183],[0.148,0.185],[0.217,0.225],[0.274,0.272],[0.302,0.337],[0.295,0.421],[0.417,0.511],[0.495,0.488],[0.532,0.361],[0.498,0.328],[0.539,0.452],[0.621,0.43],[0.663,0.396],[0.688,0.347],[0.732,0.241],[0.776,0.202],[0.81,0.181],[0.844,0.21],[0.881,0.278],[0.917,0.351],[1.0,0.414],[0.931,0.45],[0.86,0.478],[0.814,0.423],[0.785,0.354],[0.753,0.277],[0.722,0.205],[0.694,0.162],[0.667,0.174],[0.635,0.209],[0.574,0.254],[0.497,0.283],[0.421,0.281],[0.353,0.237],[0.311,0.163],[0.3,0.086],[0.31,0.017],[0.334,0.0],[0.36,0.01],[0.353,0.044]],"apo":[[0.393,0.174],[0.428,0.111],[0.441,0.045],[0.432,0.027],[0.426,0.052],[0.414,0.102],[0.417,0.178],[0.457,0.255],[0.493,0.324],[0.386,0.309],[0.317,0.35],[0.27,0.404],[0.235,0.519],[0.169,0.577],[0.121,0.596],[0.1,0.61],[0.126,0.606],[0.193,0.623],[0.256,0.67],[0.349,0.648],[0.384,0.6],[0.409,0.536],[0.459,0.483],[0.475,0.377],[0.547,0.388],[0.645,0.423],[0.679,0.48],[0.665,0.517],[0.609,0.546],[0.535,0.565],[0.448,0.586],[0.4,0.643],[0.342,0.758],[0.344,0.75],[0.309,0.694],[0.351,0.605],[0.313,0.538],[0.238,0.513],[0.153,0.501],[0.095,0.501],[0.104,0.492],[0.138,0.472],[0.191,0.421],[0.245,0.359],[0.24,0.288],[0.316,0.232],[0.295,0.158],[0.231,0.109],[0.153,0.077],[0.099,0.066],[0.065,0.004],[0.056,0.079],[0.011,0.152],[0.048,0.174],[0.076,0.174],[0.139,0.182],[0.212,0.213],[0.262,0.271],[0.295,0.332],[0.292,0.419],[0.413,0.514],[0.487,0.49],[0.53,0.363],[0.49,0.334],[0.539,0.456],[0.623,0.432],[0.661,0.395],[0.685,0.348],[0.726,0.246],[0.77,0.199],[0.803,0.175],[0.84,0.202],[0.878,0.263],[0.917,0.326],[0.997,0.407],[0.928,0.444],[0.86,0.47],[0.812,0.414],[0.781,0.345],[0.749,0.267],[0.722,0.198],[0.687,0.167],[0.661,0.176],[0.629,0.21],[0.57,0.266],[0.498,0.29],[0.424,0.287],[0.36,0.238],[0.314,0.161],[0.3,0.084],[0.311,0.021],[0.333,0.007],[0.363,0.013],[0.36,0.047]]},"method":"X-ray","resolution":2.402,"rna_type":"Enzyme cofactor riboswitch","rna_group":"Riboswitch","num_chains":1,"total_rna_len":94,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":99,"global_identity":99,"pocket_motifs":["junction","internal loop","stem"],"rmsd":1.22,"host_chain_rmsd":1.22,"pocket_rmsd":1.36,"lig_bsa":457.9,"ligand_burial":0.889,"tm_score":0.931,"rg_apo":21.0,"rg_holo":21.06,"rg_delta":0.06,"bp_rewire_src":"dssr","bp_formed":2,"bp_broken":4,"bp_conserved":41,"bp_formed_wc":0,"bp_broken_wc":1,"bp_conserved_wc":30,"maxd":5.9,"water":0,"hbonds":6,"mw":398.4,"logp":-3.26,"thumb_img":true,"thumb_v":1785389621,"apo_alts":[],"n_apo_copies":0},{"id":"3GX6_SAM_A_B_301_pocket","title":"3GX6 (SAM) vs 3IQP (apo)","struct_title":"Crystal structure of the T. tengcongensis SAM-I riboswitch variant U34C/A94G bound with SAM in manganese chloride","holo_pdb":"3GX6","ligand":"SAM","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"301","apo_pdb":"3IQP","apo_chain":"A","holo_len":94,"apo_len":94,"pocket_size":25,"thumb":{"holo":[[0.374,0.186],[0.432,0.108],[0.445,0.046],[0.433,0.025],[0.425,0.053],[0.407,0.102],[0.413,0.185],[0.45,0.256],[0.504,0.323],[0.402,0.33],[0.322,0.364],[0.272,0.414],[0.217,0.533],[0.207,0.653],[0.137,0.585],[0.089,0.603],[0.104,0.603],[0.175,0.626],[0.239,0.688],[0.338,0.657],[0.368,0.608],[0.399,0.545],[0.453,0.49],[0.468,0.376],[0.542,0.39],[0.634,0.426],[0.676,0.479],[0.655,0.519],[0.602,0.551],[0.525,0.574],[0.435,0.592],[0.386,0.651],[0.316,0.759],[0.327,0.754],[0.286,0.69],[0.337,0.606],[0.295,0.54],[0.221,0.505],[0.148,0.495],[0.087,0.497],[0.081,0.489],[0.126,0.472],[0.186,0.422],[0.249,0.358],[0.262,0.28],[0.246,0.194],[0.285,0.153],[0.219,0.11],[0.135,0.081],[0.084,0.06],[0.055,0.006],[0.046,0.083],[0.0,0.157],[0.037,0.184],[0.073,0.184],[0.134,0.183],[0.211,0.222],[0.26,0.274],[0.296,0.337],[0.286,0.425],[0.406,0.518],[0.488,0.494],[0.53,0.364],[0.494,0.332],[0.53,0.454],[0.613,0.44],[0.658,0.403],[0.688,0.359],[0.731,0.251],[0.772,0.211],[0.808,0.189],[0.839,0.21],[0.876,0.281],[0.915,0.354],[1.0,0.415],[0.927,0.456],[0.856,0.481],[0.805,0.431],[0.776,0.36],[0.747,0.279],[0.718,0.212],[0.691,0.167],[0.668,0.175],[0.635,0.223],[0.572,0.267],[0.494,0.289],[0.411,0.285],[0.348,0.237],[0.306,0.164],[0.293,0.082],[0.31,0.019],[0.333,0.001],[0.36,0.013],[0.355,0.05]],"apo":[[0.389,0.178],[0.425,0.114],[0.439,0.047],[0.43,0.029],[0.424,0.053],[0.411,0.104],[0.413,0.181],[0.453,0.259],[0.488,0.328],[0.38,0.312],[0.31,0.352],[0.262,0.407],[0.225,0.523],[0.158,0.581],[0.109,0.599],[0.088,0.614],[0.114,0.611],[0.182,0.629],[0.245,0.677],[0.339,0.656],[0.375,0.607],[0.401,0.543],[0.452,0.49],[0.469,0.383],[0.542,0.396],[0.641,0.432],[0.675,0.49],[0.66,0.527],[0.604,0.554],[0.528,0.573],[0.44,0.593],[0.391,0.651],[0.331,0.766],[0.332,0.757],[0.298,0.701],[0.342,0.612],[0.304,0.544],[0.229,0.518],[0.143,0.505],[0.084,0.504],[0.093,0.495],[0.127,0.474],[0.182,0.423],[0.237,0.361],[0.233,0.288],[0.31,0.233],[0.29,0.159],[0.226,0.108],[0.147,0.075],[0.092,0.063],[0.06,0.0],[0.049,0.075],[0.003,0.149],[0.04,0.172],[0.069,0.172],[0.132,0.181],[0.205,0.214],[0.256,0.273],[0.288,0.335],[0.284,0.422],[0.405,0.52],[0.481,0.497],[0.525,0.368],[0.486,0.34],[0.534,0.463],[0.619,0.44],[0.657,0.403],[0.682,0.356],[0.725,0.253],[0.77,0.206],[0.803,0.182],[0.841,0.21],[0.878,0.271],[0.917,0.335],[0.996,0.418],[0.927,0.455],[0.857,0.48],[0.809,0.423],[0.779,0.353],[0.747,0.274],[0.721,0.203],[0.686,0.172],[0.66,0.182],[0.627,0.216],[0.567,0.272],[0.494,0.295],[0.419,0.291],[0.355,0.241],[0.309,0.163],[0.296,0.085],[0.307,0.021],[0.33,0.008],[0.36,0.015],[0.357,0.05]]},"method":"X-ray","resolution":2.8,"rna_type":"Enzyme cofactor riboswitch","rna_group":"Riboswitch","num_chains":1,"total_rna_len":94,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":99,"global_identity":99,"pocket_motifs":["junction","internal loop","stem"],"rmsd":1.16,"host_chain_rmsd":1.16,"pocket_rmsd":1.34,"lig_bsa":466.3,"ligand_burial":0.89,"tm_score":0.941,"rg_apo":21.0,"rg_holo":21.0,"rg_delta":0.0,"bp_rewire_src":"dssr","bp_formed":3,"bp_broken":5,"bp_conserved":40,"bp_formed_wc":0,"bp_broken_wc":1,"bp_conserved_wc":29,"maxd":5.6,"water":0,"hbonds":5,"mw":398.4,"logp":-3.26,"thumb_img":true,"thumb_v":1785389621,"apo_alts":[],"n_apo_copies":0},{"id":"3IQR_SAM_A_K_301_pocket","title":"3IQR (SAM) vs 3IQP (apo)","struct_title":"SAM-I riboswitch from T. tencongensis variant A94G bound with SAM","holo_pdb":"3IQR","ligand":"SAM","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"301","apo_pdb":"3IQP","apo_chain":"A","holo_len":94,"apo_len":94,"pocket_size":25,"thumb":{"holo":[[0.399,0.18],[0.44,0.115],[0.449,0.051],[0.439,0.027],[0.429,0.054],[0.413,0.101],[0.421,0.18],[0.459,0.255],[0.52,0.314],[0.409,0.314],[0.336,0.352],[0.283,0.408],[0.238,0.515],[0.185,0.562],[0.127,0.577],[0.104,0.59],[0.117,0.599],[0.187,0.617],[0.246,0.662],[0.345,0.652],[0.379,0.601],[0.41,0.539],[0.465,0.483],[0.473,0.38],[0.546,0.394],[0.634,0.427],[0.68,0.475],[0.665,0.513],[0.609,0.546],[0.537,0.569],[0.447,0.583],[0.393,0.638],[0.325,0.744],[0.339,0.736],[0.3,0.689],[0.347,0.603],[0.309,0.536],[0.235,0.51],[0.154,0.49],[0.101,0.49],[0.104,0.479],[0.142,0.46],[0.2,0.413],[0.26,0.357],[0.274,0.277],[0.251,0.197],[0.295,0.15],[0.219,0.112],[0.133,0.09],[0.077,0.078],[0.055,0.018],[0.034,0.088],[0.0,0.168],[0.046,0.19],[0.077,0.188],[0.148,0.185],[0.223,0.222],[0.278,0.272],[0.306,0.337],[0.297,0.418],[0.42,0.509],[0.495,0.487],[0.529,0.36],[0.498,0.331],[0.541,0.454],[0.624,0.434],[0.659,0.399],[0.678,0.354],[0.731,0.249],[0.774,0.214],[0.808,0.179],[0.844,0.202],[0.874,0.269],[0.916,0.344],[1.0,0.41],[0.93,0.446],[0.859,0.471],[0.812,0.42],[0.784,0.345],[0.753,0.271],[0.722,0.204],[0.694,0.168],[0.668,0.177],[0.636,0.221],[0.574,0.271],[0.497,0.292],[0.42,0.284],[0.356,0.233],[0.317,0.162],[0.306,0.085],[0.318,0.025],[0.343,0.011],[0.374,0.017],[0.368,0.055]],"apo":[[0.397,0.178],[0.431,0.115],[0.445,0.048],[0.436,0.029],[0.429,0.053],[0.416,0.102],[0.419,0.178],[0.459,0.255],[0.493,0.322],[0.387,0.306],[0.318,0.347],[0.27,0.401],[0.235,0.516],[0.169,0.573],[0.121,0.592],[0.1,0.608],[0.126,0.605],[0.193,0.623],[0.256,0.67],[0.349,0.649],[0.385,0.601],[0.41,0.537],[0.46,0.484],[0.476,0.379],[0.548,0.392],[0.646,0.427],[0.68,0.483],[0.664,0.519],[0.609,0.547],[0.534,0.565],[0.448,0.585],[0.4,0.643],[0.341,0.757],[0.342,0.747],[0.309,0.693],[0.351,0.605],[0.314,0.539],[0.239,0.514],[0.154,0.501],[0.096,0.5],[0.105,0.49],[0.138,0.469],[0.192,0.417],[0.246,0.356],[0.242,0.284],[0.318,0.23],[0.298,0.157],[0.234,0.108],[0.156,0.075],[0.102,0.063],[0.069,0.0],[0.059,0.074],[0.014,0.147],[0.051,0.17],[0.079,0.171],[0.142,0.18],[0.215,0.213],[0.265,0.27],[0.297,0.331],[0.293,0.416],[0.412,0.512],[0.487,0.489],[0.53,0.362],[0.492,0.335],[0.539,0.456],[0.623,0.433],[0.661,0.397],[0.686,0.351],[0.728,0.249],[0.772,0.203],[0.804,0.178],[0.841,0.204],[0.878,0.264],[0.917,0.328],[0.996,0.41],[0.927,0.446],[0.859,0.471],[0.811,0.415],[0.781,0.345],[0.749,0.268],[0.723,0.199],[0.689,0.168],[0.663,0.178],[0.631,0.213],[0.572,0.269],[0.5,0.292],[0.426,0.288],[0.362,0.238],[0.317,0.161],[0.304,0.085],[0.315,0.022],[0.338,0.01],[0.368,0.018],[0.364,0.052]]},"method":"X-ray","resolution":2.55,"rna_type":"Enzyme cofactor riboswitch","rna_group":"Riboswitch","num_chains":1,"total_rna_len":94,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["junction","internal loop","stem"],"rmsd":1.01,"host_chain_rmsd":1.01,"pocket_rmsd":1.36,"lig_bsa":481.8,"ligand_burial":0.882,"tm_score":0.941,"rg_apo":21.08,"rg_holo":21.0,"rg_delta":-0.08,"bp_rewire_src":"dssr","bp_formed":3,"bp_broken":4,"bp_conserved":41,"bp_formed_wc":0,"bp_broken_wc":1,"bp_conserved_wc":30,"maxd":5.1,"water":1,"hbonds":7,"mw":398.4,"logp":-3.26,"thumb_img":true,"thumb_v":1785389621,"apo_alts":[],"n_apo_copies":0},{"id":"3MIJ_R14_A_D_30_pocket","title":"3MIJ (R14) vs 2KBP (apo)","struct_title":"Crystal structure of a telomeric RNA G-quadruplex complexed with an acridine-based ligand.","holo_pdb":"3MIJ","ligand":"R14","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"30","apo_pdb":"2KBP","apo_chain":"B","holo_len":12,"apo_len":12,"pocket_size":13,"thumb":{"holo":[[1.0,0.304],[0.813,0.344],[0.577,0.262],[0.382,0.278],[0.235,0.377],[0.007,0.176],[0.213,0.0],[0.283,0.161],[0.241,0.43],[0.201,0.619],[0.215,0.771],[0.279,0.779]],"apo":[[0.827,0.487],[0.821,0.362],[0.659,0.256],[0.446,0.232],[0.286,0.331],[0.002,0.262],[0.0,0.114],[0.249,0.127],[0.359,0.369],[0.303,0.559],[0.266,0.724],[0.228,0.678]]},"method":"X-ray","resolution":2.6,"rna_type":"Quadruplex","rna_group":"Structural","num_chains":2,"total_rna_len":24,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["single strand"],"rmsd":6.01,"host_chain_rmsd":3.98,"pocket_rmsd":4.51,"lig_bsa":353.4,"ligand_burial":0.314,"tm_score":0.153,"rg_apo":9.81,"rg_holo":10.54,"rg_delta":0.73,"bp_rewire_src":"dssr","bp_formed":2,"bp_broken":0,"bp_conserved":12,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":0,"maxd":15.5,"water":1,"hbonds":2,"mw":749.9,"logp":7.22,"thumb_img":true,"thumb_v":1785389620,"apo_alts":[],"n_apo_copies":0},{"id":"3Q50_PRF_A_B_34_pocket","title":"3Q50 (PRF) vs 3Q51 (apo)","struct_title":"Structural analysis of a class I PreQ1 riboswitch aptamer in the metabolite-bound state","holo_pdb":"3Q50","ligand":"PRF","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"34","apo_pdb":"3Q51","apo_chain":"A","holo_len":33,"apo_len":32,"pocket_size":17,"thumb":{"holo":[[0.693,0.6],[0.722,0.527],[0.726,0.407],[0.65,0.304],[0.545,0.198],[0.468,0.051],[0.338,0.07],[0.228,0.15],[0.084,0.202],[0.149,0.302],[0.316,0.356],[0.381,0.567],[0.258,0.547],[0.261,0.485],[0.313,0.373],[0.398,0.247],[0.525,0.181],[0.656,0.184],[0.765,0.261],[0.852,0.381],[0.904,0.475],[1.0,0.316],[0.823,0.351],[0.827,0.121],[0.754,0.01],[0.63,0.001],[0.511,0.005],[0.359,0.016],[0.287,0.092],[0.226,0.211],[0.168,0.324],[0.103,0.466],[0.035,0.439]],"apo":[[0.704,0.597],[0.736,0.523],[0.724,0.41],[0.651,0.307],[0.548,0.209],[0.467,0.065],[0.344,0.083],[0.226,0.155],[0.084,0.205],[0.143,0.306],[0.316,0.361],[0.293,0.535],[0.361,0.389],[0.354,0.446],[0.399,0.258],[0.528,0.184],[0.661,0.185],[0.766,0.258],[0.861,0.375],[0.902,0.468],[0.993,0.314],[0.824,0.347],[0.822,0.119],[0.749,0.003],[0.63,0.0],[0.502,0.01],[0.369,0.023],[0.285,0.096],[0.224,0.223],[0.163,0.334],[0.069,0.457],[0.0,0.429]]},"method":"X-ray","resolution":2.75,"rna_type":"Purine-compound riboswitch","rna_group":"Riboswitch","num_chains":1,"total_rna_len":33,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["internal loop","hairpin loop","stem"],"rmsd":1.67,"host_chain_rmsd":1.67,"pocket_rmsd":2.26,"lig_bsa":282.0,"ligand_burial":0.886,"tm_score":0.693,"rg_apo":12.93,"rg_holo":12.94,"rg_delta":0.01,"bp_rewire_src":"dssr","bp_formed":3,"bp_broken":2,"bp_conserved":16,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":7,"maxd":6.7,"water":0,"hbonds":3,"mw":179.2,"logp":-0.71,"thumb_img":true,"thumb_v":1785389621,"apo_alts":[],"n_apo_copies":0},{"id":"3S4P_JS6_A_C_50_pocket","title":"3S4P (JS6) vs 3BNL (apo)","struct_title":"Crystal structure of the bacterial ribosomal decoding site complexed with an amphiphilic paromomycin O2''-ether analogue","holo_pdb":"3S4P","ligand":"JS6","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"B","lig_resseq":"50","apo_pdb":"3BNL","apo_chain":"A","holo_len":21,"apo_len":22,"pocket_size":19,"thumb":{"holo":[[0.052,0.165],[0.119,0.233],[0.194,0.278],[0.258,0.266],[0.314,0.231],[0.361,0.153],[0.401,0.075],[0.446,0.016],[0.488,0.0],[0.523,0.028],[0.56,0.097],[0.587,0.185],[0.627,0.269],[0.674,0.328],[0.803,0.417],[0.861,0.376],[0.837,0.267],[0.856,0.151],[0.89,0.075],[0.932,0.019],[0.978,0.023]],"apo":[[0.0,0.055],[0.05,0.119],[0.11,0.189],[0.171,0.251],[0.235,0.267],[0.3,0.251],[0.356,0.193],[0.398,0.117],[0.436,0.062],[0.476,0.034],[0.507,0.057],[0.553,0.12],[0.603,0.197],[0.66,0.259],[0.727,0.296],[0.803,0.36],[0.843,0.332],[0.844,0.247],[0.853,0.139],[0.895,0.073],[0.946,0.04],[1.0,0.053]]},"method":"X-ray","resolution":2.56,"rna_type":"Ribosomal RNA","rna_group":"Protein synthesis","num_chains":2,"total_rna_len":42,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":95,"pocket_motifs":["internal loop","stem"],"rmsd":2.41,"host_chain_rmsd":2.24,"pocket_rmsd":2.39,"lig_bsa":573.6,"ligand_burial":0.571,"tm_score":0.296,"rg_apo":17.97,"rg_holo":17.93,"rg_delta":-0.04,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":2,"bp_conserved":18,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":16,"maxd":4.7,"water":4,"hbonds":9,"mw":762.9,"logp":-7.01,"thumb_img":true,"thumb_v":1785488731,"apo_alts":[],"n_apo_copies":0},{"id":"3S4P_JS6_B_D_51_pocket","title":"3S4P (JS6) vs 3BNL (apo)","struct_title":"Crystal structure of the bacterial ribosomal decoding site complexed with an amphiphilic paromomycin O2''-ether analogue","holo_pdb":"3S4P","ligand":"JS6","holo_chain":"B","holo_rna_chain":"B","lig_auth_chain":"B","nearest_rna_chain":"A","lig_resseq":"51","apo_pdb":"3BNL","apo_chain":"B","holo_len":21,"apo_len":22,"pocket_size":21,"thumb":{"holo":[[0.062,0.163],[0.124,0.233],[0.196,0.265],[0.256,0.235],[0.305,0.186],[0.35,0.106],[0.401,0.032],[0.457,0.002],[0.502,0.012],[0.532,0.063],[0.567,0.141],[0.601,0.228],[0.646,0.294],[0.693,0.328],[0.835,0.389],[0.865,0.342],[0.826,0.216],[0.846,0.109],[0.881,0.035],[0.926,0.0],[0.984,0.02]],"apo":[[0.0,0.046],[0.052,0.12],[0.113,0.196],[0.173,0.244],[0.234,0.239],[0.299,0.209],[0.354,0.141],[0.397,0.073],[0.434,0.037],[0.475,0.031],[0.511,0.074],[0.557,0.151],[0.608,0.228],[0.664,0.276],[0.731,0.294],[0.878,0.374],[0.843,0.294],[0.842,0.201],[0.853,0.093],[0.894,0.036],[0.946,0.03],[1.0,0.058]]},"method":"X-ray","resolution":2.56,"rna_type":"Ribosomal RNA","rna_group":"Protein synthesis","num_chains":2,"total_rna_len":42,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":95,"pocket_motifs":["internal loop","stem"],"rmsd":2.4,"host_chain_rmsd":2.04,"pocket_rmsd":2.4,"lig_bsa":588.2,"ligand_burial":0.58,"tm_score":0.268,"rg_apo":18.21,"rg_holo":17.94,"rg_delta":-0.27,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":2,"bp_conserved":18,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":16,"maxd":5.3,"water":4,"hbonds":11,"mw":762.9,"logp":-7.01,"thumb_img":true,"thumb_v":1785488731,"apo_alts":[],"n_apo_copies":0},{"id":"3SD3_FFO_A_G_3631_pocket","title":"3SD3 (FFO) vs 7KD1 (apo)","struct_title":"The structure of the tetrahydrofolate riboswitch containing a U25C mutation","holo_pdb":"3SD3","ligand":"FFO","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"3631","apo_pdb":"7KD1","apo_chain":"A","holo_len":89,"apo_len":89,"pocket_size":16,"thumb":{"holo":[[0.013,0.369],[0.071,0.415],[0.131,0.438],[0.18,0.435],[0.224,0.42],[0.262,0.371],[0.321,0.296],[0.38,0.259],[0.421,0.288],[0.451,0.325],[0.489,0.381],[0.526,0.437],[0.558,0.484],[0.59,0.501],[0.622,0.485],[0.654,0.445],[0.683,0.381],[0.706,0.315],[0.747,0.278],[0.805,0.283],[0.86,0.213],[0.774,0.208],[0.723,0.21],[0.671,0.233],[0.635,0.235],[0.611,0.196],[0.598,0.123],[0.572,0.055],[0.539,0.008],[0.509,0.0],[0.478,0.018],[0.444,0.066],[0.419,0.134],[0.387,0.194],[0.348,0.222],[0.271,0.314],[0.208,0.318],[0.183,0.241],[0.188,0.176],[0.224,0.143],[0.281,0.141],[0.343,0.135],[0.376,0.123],[0.388,0.199],[0.429,0.214],[0.469,0.193],[0.506,0.149],[0.542,0.092],[0.575,0.032],[0.61,0.006],[0.639,0.014],[0.67,0.048],[0.699,0.108],[0.734,0.162],[0.78,0.232],[0.826,0.308],[0.862,0.33],[0.897,0.387],[0.924,0.446],[0.997,0.485],[0.938,0.502],[0.875,0.534],[0.849,0.488],[0.829,0.461],[0.806,0.407],[0.778,0.344],[0.717,0.297],[0.636,0.271],[0.669,0.298],[0.624,0.313],[0.584,0.357],[0.551,0.417],[0.518,0.469],[0.487,0.498],[0.458,0.496],[0.426,0.457],[0.392,0.397],[0.354,0.347],[0.287,0.267],[0.257,0.209],[0.188,0.179],[0.143,0.2],[0.119,0.241],[0.127,0.301],[0.142,0.37],[0.137,0.439],[0.108,0.478],[0.06,0.484],[0.0,0.463]],"apo":[[0.036,0.443],[0.096,0.479],[0.152,0.483],[0.193,0.454],[0.223,0.416],[0.25,0.355],[0.328,0.289],[0.375,0.243],[0.417,0.261],[0.448,0.297],[0.478,0.352],[0.508,0.414],[0.536,0.468],[0.571,0.494],[0.608,0.487],[0.645,0.45],[0.681,0.391],[0.711,0.328],[0.755,0.289],[0.805,0.297],[0.877,0.229],[0.787,0.219],[0.732,0.229],[0.677,0.244],[0.648,0.231],[0.635,0.179],[0.63,0.111],[0.617,0.049],[0.592,0.011],[0.551,0.006],[0.501,0.034],[0.453,0.077],[0.41,0.125],[0.377,0.163],[0.329,0.228],[0.271,0.301],[0.203,0.279],[0.164,0.218],[0.152,0.165],[0.173,0.126],[0.22,0.115],[0.3,0.114],[0.34,0.125],[0.357,0.158],[0.425,0.176],[0.46,0.192],[0.493,0.166],[0.534,0.126],[0.587,0.08],[0.637,0.046],[0.68,0.039],[0.723,0.048],[0.741,0.089],[0.754,0.157],[0.777,0.228],[0.826,0.308],[0.859,0.339],[0.898,0.398],[0.928,0.441],[1.0,0.471],[0.943,0.494],[0.885,0.524],[0.848,0.494],[0.822,0.467],[0.801,0.409],[0.774,0.344],[0.717,0.303],[0.633,0.272],[0.67,0.303],[0.628,0.317],[0.587,0.359],[0.547,0.413],[0.508,0.46],[0.469,0.482],[0.439,0.468],[0.413,0.425],[0.388,0.363],[0.354,0.307],[0.296,0.224],[0.224,0.206],[0.158,0.204],[0.121,0.22],[0.107,0.248],[0.12,0.292],[0.138,0.357],[0.144,0.436],[0.125,0.491],[0.079,0.53],[0.018,0.554]]},"method":"X-ray","resolution":1.95,"rna_type":"Enzyme cofactor riboswitch","rna_group":"Riboswitch","num_chains":1,"total_rna_len":89,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":99,"global_identity":99,"pocket_motifs":["junction","hairpin loop","bulge","stem"],"rmsd":3.48,"host_chain_rmsd":3.48,"pocket_rmsd":4.6,"lig_bsa":290.2,"ligand_burial":0.63,"tm_score":0.636,"rg_apo":23.44,"rg_holo":23.08,"rg_delta":-0.36,"bp_rewire_src":"dssr","bp_formed":2,"bp_broken":1,"bp_conserved":41,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":30,"maxd":8.2,"water":0,"hbonds":5,"mw":473.4,"logp":-0.73,"thumb_img":true,"thumb_v":1785389621,"apo_alts":[],"n_apo_copies":0},{"id":"3TD1_GET_B_C_50_pocket","title":"3TD1 (GET) vs 7EDN (apo)","struct_title":"Crystal structure of the bacterial A1408G-mutant and the protozoa cytoplasmic ribosomal decoding site in complex with geneticin","holo_pdb":"3TD1","ligand":"GET","holo_chain":"B","holo_rna_chain":"B","lig_auth_chain":"B","nearest_rna_chain":"A","lig_resseq":"50","apo_pdb":"7EDN","apo_chain":"A","holo_len":23,"apo_len":22,"pocket_size":18,"thumb":{"holo":[[0.121,0.439],[0.016,0.382],[0.004,0.227],[0.077,0.161],[0.154,0.123],[0.231,0.108],[0.29,0.161],[0.334,0.245],[0.38,0.333],[0.43,0.396],[0.476,0.422],[0.515,0.384],[0.545,0.313],[0.575,0.225],[0.614,0.149],[0.66,0.09],[0.8,0.0],[0.857,0.037],[0.827,0.151],[0.847,0.257],[0.88,0.346],[0.918,0.413],[0.966,0.428]],"apo":[[0.0,0.381],[0.035,0.281],[0.076,0.194],[0.136,0.136],[0.205,0.11],[0.28,0.13],[0.345,0.194],[0.377,0.285],[0.41,0.356],[0.447,0.381],[0.492,0.369],[0.532,0.303],[0.583,0.226],[0.639,0.16],[0.703,0.12],[0.772,0.115],[0.872,0.05],[0.805,0.175],[0.84,0.281],[0.893,0.353],[0.95,0.383],[1.0,0.366]]},"method":"X-ray","resolution":2.1,"rna_type":"Ribosomal RNA","rna_group":"Protein synthesis","num_chains":2,"total_rna_len":43,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["internal loop","stem","single strand"],"rmsd":2.95,"host_chain_rmsd":2.65,"pocket_rmsd":2.77,"lig_bsa":478.0,"ligand_burial":0.719,"tm_score":0.297,"rg_apo":18.65,"rg_holo":18.78,"rg_delta":0.13,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":2,"bp_conserved":18,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":16,"maxd":7.0,"water":4,"hbonds":8,"mw":496.6,"logp":-5.61,"thumb_img":true,"thumb_v":1785488731,"apo_alts":[],"n_apo_copies":0},{"id":"3TD1_GET_B_D_51_pocket","title":"3TD1 (GET) vs 7EDN (apo)","struct_title":"Crystal structure of the bacterial A1408G-mutant and the protozoa cytoplasmic ribosomal decoding site in complex with geneticin","holo_pdb":"3TD1","ligand":"GET","holo_chain":"B","holo_rna_chain":"B","lig_auth_chain":"B","nearest_rna_chain":"B","lig_resseq":"51","apo_pdb":"7EDN","apo_chain":"A","holo_len":23,"apo_len":22,"pocket_size":16,"thumb":{"holo":[[0.121,0.439],[0.016,0.382],[0.004,0.227],[0.077,0.161],[0.154,0.123],[0.231,0.108],[0.29,0.161],[0.334,0.245],[0.38,0.333],[0.43,0.396],[0.476,0.422],[0.515,0.384],[0.545,0.313],[0.575,0.225],[0.614,0.149],[0.66,0.09],[0.8,0.0],[0.857,0.037],[0.827,0.151],[0.847,0.257],[0.88,0.346],[0.918,0.413],[0.966,0.428]],"apo":[[0.0,0.381],[0.035,0.281],[0.076,0.194],[0.136,0.136],[0.205,0.11],[0.28,0.13],[0.345,0.194],[0.377,0.285],[0.41,0.356],[0.447,0.381],[0.492,0.369],[0.532,0.303],[0.583,0.226],[0.639,0.16],[0.703,0.12],[0.772,0.115],[0.872,0.05],[0.805,0.175],[0.84,0.281],[0.893,0.353],[0.95,0.383],[1.0,0.366]]},"method":"X-ray","resolution":2.1,"rna_type":"Ribosomal RNA","rna_group":"Protein synthesis","num_chains":2,"total_rna_len":43,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["internal loop","stem"],"rmsd":2.95,"host_chain_rmsd":2.65,"pocket_rmsd":3.13,"lig_bsa":485.4,"ligand_burial":0.717,"tm_score":0.297,"rg_apo":18.65,"rg_holo":18.78,"rg_delta":0.13,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":2,"bp_conserved":18,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":16,"maxd":7.0,"water":5,"hbonds":8,"mw":496.6,"logp":-5.61,"thumb_img":true,"thumb_v":1785444665,"apo_alts":[],"n_apo_copies":0},{"id":"4B5R_SAM_A_B_1095_pocket","title":"4B5R (SAM) vs 3IQP (apo)","struct_title":"SAM-I riboswitch bearing the H. marismortui K-t-7","holo_pdb":"4B5R","ligand":"SAM","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"1095","apo_pdb":"3IQP","apo_chain":"A","holo_len":94,"apo_len":94,"pocket_size":25,"thumb":{"holo":[[0.577,0.555],[0.558,0.63],[0.565,0.698],[0.584,0.722],[0.595,0.697],[0.606,0.648],[0.596,0.574],[0.556,0.499],[0.498,0.433],[0.611,0.441],[0.684,0.405],[0.739,0.35],[0.817,0.239],[0.818,0.124],[0.898,0.193],[0.921,0.183],[0.899,0.182],[0.83,0.163],[0.771,0.109],[0.675,0.124],[0.639,0.176],[0.608,0.233],[0.55,0.279],[0.534,0.393],[0.461,0.38],[0.376,0.342],[0.329,0.283],[0.352,0.241],[0.405,0.211],[0.484,0.192],[0.569,0.182],[0.625,0.131],[0.691,0.026],[0.696,0.026],[0.728,0.092],[0.669,0.177],[0.703,0.242],[0.779,0.273],[0.86,0.282],[0.92,0.288],[0.928,0.292],[0.888,0.309],[0.824,0.348],[0.766,0.402],[0.747,0.48],[0.759,0.562],[0.727,0.591],[0.788,0.633],[0.87,0.664],[0.917,0.688],[0.944,0.755],[0.963,0.681],[0.995,0.611],[0.961,0.579],[0.934,0.565],[0.874,0.542],[0.797,0.52],[0.74,0.476],[0.71,0.415],[0.723,0.335],[0.599,0.24],[0.525,0.268],[0.48,0.393],[0.515,0.429],[0.474,0.301],[0.391,0.323],[0.347,0.359],[0.32,0.422],[0.282,0.519],[0.241,0.562],[0.207,0.579],[0.175,0.547],[0.14,0.475],[0.097,0.408],[0.0,0.361],[0.065,0.318],[0.139,0.285],[0.188,0.332],[0.223,0.391],[0.261,0.463],[0.298,0.536],[0.328,0.581],[0.353,0.584],[0.38,0.549],[0.436,0.499],[0.512,0.467],[0.589,0.466],[0.655,0.51],[0.701,0.583],[0.721,0.656],[0.708,0.712],[0.677,0.723],[0.639,0.709],[0.635,0.66]],"apo":[[0.615,0.579],[0.58,0.642],[0.567,0.708],[0.576,0.727],[0.583,0.704],[0.596,0.654],[0.594,0.579],[0.555,0.502],[0.521,0.434],[0.628,0.45],[0.697,0.41],[0.745,0.356],[0.781,0.241],[0.848,0.185],[0.895,0.166],[0.916,0.151],[0.889,0.153],[0.822,0.135],[0.76,0.087],[0.666,0.108],[0.631,0.156],[0.605,0.219],[0.555,0.272],[0.538,0.377],[0.465,0.364],[0.368,0.329],[0.335,0.272],[0.351,0.235],[0.406,0.209],[0.482,0.19],[0.568,0.171],[0.616,0.114],[0.675,0.0],[0.675,0.009],[0.708,0.064],[0.664,0.152],[0.701,0.219],[0.776,0.244],[0.86,0.257],[0.919,0.259],[0.91,0.269],[0.877,0.289],[0.823,0.34],[0.769,0.401],[0.772,0.473],[0.696,0.527],[0.716,0.6],[0.779,0.65],[0.856,0.683],[0.911,0.695],[0.944,0.758],[0.954,0.685],[1.0,0.612],[0.963,0.588],[0.934,0.588],[0.871,0.578],[0.799,0.545],[0.749,0.487],[0.717,0.426],[0.722,0.341],[0.603,0.244],[0.528,0.267],[0.484,0.393],[0.522,0.421],[0.475,0.299],[0.392,0.322],[0.353,0.358],[0.328,0.404],[0.286,0.505],[0.241,0.552],[0.209,0.576],[0.172,0.549],[0.136,0.489],[0.097,0.425],[0.019,0.343],[0.088,0.307],[0.156,0.282],[0.204,0.338],[0.233,0.408],[0.265,0.486],[0.291,0.556],[0.324,0.586],[0.349,0.577],[0.382,0.542],[0.441,0.486],[0.513,0.464],[0.588,0.469],[0.651,0.519],[0.696,0.596],[0.709,0.673],[0.697,0.735],[0.674,0.748],[0.644,0.74],[0.647,0.705]]},"method":"X-ray","resolution":2.95,"rna_type":"Enzyme cofactor riboswitch","rna_group":"Riboswitch","num_chains":1,"total_rna_len":94,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":95,"global_identity":95,"pocket_motifs":["junction","internal loop","stem"],"rmsd":1.65,"host_chain_rmsd":1.65,"pocket_rmsd":1.5,"lig_bsa":478.8,"ligand_burial":0.888,"tm_score":0.838,"rg_apo":21.05,"rg_holo":20.87,"rg_delta":-0.18,"bp_rewire_src":"dssr","bp_formed":3,"bp_broken":5,"bp_conserved":40,"bp_formed_wc":0,"bp_broken_wc":1,"bp_conserved_wc":30,"maxd":5.2,"water":0,"hbonds":6,"mw":398.4,"logp":-3.26,"thumb_img":true,"thumb_v":1785389621,"apo_alts":[],"n_apo_copies":0},{"id":"4ERJ_ACA_A_B_201_pocket","title":"4ERJ (ACA) vs 3D0X (apo)","struct_title":"Crystal structure of the lysine riboswitch bound to a 6-aminocaproic acid","holo_pdb":"4ERJ","ligand":"ACA","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"201","apo_pdb":"3D0X","apo_chain":"A","holo_len":161,"apo_len":161,"pocket_size":18,"thumb":{"holo":[[0.107,0.083],[0.118,0.113],[0.128,0.166],[0.138,0.223],[0.142,0.272],[0.152,0.303],[0.173,0.327],[0.217,0.333],[0.268,0.387],[0.327,0.419],[0.3,0.352],[0.339,0.316],[0.378,0.31],[0.409,0.327],[0.437,0.368],[0.468,0.423],[0.501,0.449],[0.539,0.502],[0.562,0.493],[0.582,0.475],[0.606,0.432],[0.648,0.395],[0.704,0.427],[0.757,0.453],[0.731,0.384],[0.75,0.337],[0.792,0.333],[0.846,0.355],[0.903,0.378],[0.946,0.391],[0.976,0.388],[0.984,0.364],[0.968,0.318],[0.935,0.273],[0.912,0.217],[0.938,0.161],[0.907,0.112],[0.867,0.142],[0.817,0.155],[0.74,0.157],[0.671,0.166],[0.672,0.107],[0.695,0.053],[0.731,0.013],[0.775,0.001],[0.824,0.025],[0.87,0.058],[0.906,0.1],[0.956,0.12],[1.0,0.16],[0.925,0.143],[0.881,0.168],[0.862,0.21],[0.867,0.262],[0.883,0.32],[0.905,0.376],[0.918,0.426],[0.916,0.451],[0.89,0.454],[0.845,0.435],[0.791,0.416],[0.736,0.381],[0.687,0.349],[0.639,0.321],[0.595,0.307],[0.559,0.339],[0.536,0.399],[0.511,0.44],[0.476,0.501],[0.444,0.509],[0.414,0.483],[0.387,0.435],[0.361,0.382],[0.333,0.331],[0.3,0.314],[0.258,0.296],[0.299,0.215],[0.308,0.28],[0.355,0.26],[0.394,0.238],[0.417,0.189],[0.428,0.133],[0.443,0.079],[0.464,0.047],[0.496,0.041],[0.536,0.068],[0.58,0.102],[0.614,0.147],[0.644,0.18],[0.671,0.176],[0.764,0.147],[0.822,0.137],[0.795,0.077],[0.753,0.033],[0.702,0.013],[0.657,0.022],[0.624,0.062],[0.609,0.12],[0.601,0.173],[0.59,0.201],[0.568,0.204],[0.534,0.179],[0.491,0.14],[0.45,0.101],[0.415,0.075],[0.379,0.076],[0.298,0.109],[0.366,0.087],[0.357,0.143],[0.335,0.199],[0.257,0.249],[0.287,0.304],[0.322,0.346],[0.346,0.367],[0.377,0.363],[0.414,0.332],[0.453,0.292],[0.487,0.239],[0.511,0.211],[0.531,0.218],[0.551,0.25],[0.584,0.304],[0.648,0.351],[0.6,0.375],[0.553,0.404],[0.54,0.401],[0.506,0.36],[0.488,0.304],[0.469,0.246],[0.448,0.212],[0.423,0.2],[0.395,0.22],[0.365,0.26],[0.332,0.312],[0.292,0.342],[0.267,0.361],[0.237,0.35],[0.202,0.32],[0.169,0.271],[0.131,0.23],[0.107,0.203],[0.084,0.202],[0.058,0.242],[0.0,0.281],[0.049,0.313],[0.101,0.322],[0.132,0.291],[0.15,0.235],[0.164,0.2],[0.186,0.182],[0.224,0.186],[0.237,0.21],[0.23,0.127],[0.192,0.199],[0.151,0.241],[0.111,0.273],[0.084,0.273],[0.06,0.252],[0.053,0.207],[0.051,0.144],[0.027,0.093]],"apo":[[0.11,0.073],[0.119,0.105],[0.126,0.157],[0.134,0.215],[0.139,0.264],[0.151,0.297],[0.172,0.323],[0.211,0.342],[0.267,0.367],[0.326,0.428],[0.3,0.348],[0.339,0.316],[0.375,0.315],[0.406,0.333],[0.435,0.374],[0.466,0.427],[0.502,0.451],[0.54,0.506],[0.563,0.494],[0.583,0.476],[0.607,0.432],[0.65,0.394],[0.707,0.425],[0.758,0.451],[0.732,0.383],[0.75,0.336],[0.792,0.332],[0.846,0.352],[0.903,0.377],[0.947,0.389],[0.975,0.387],[0.985,0.364],[0.965,0.318],[0.936,0.273],[0.909,0.21],[0.941,0.16],[0.91,0.112],[0.871,0.142],[0.818,0.155],[0.743,0.157],[0.672,0.165],[0.672,0.107],[0.696,0.052],[0.732,0.012],[0.775,0.0],[0.822,0.024],[0.868,0.054],[0.907,0.099],[0.957,0.12],[0.999,0.156],[0.925,0.142],[0.883,0.166],[0.862,0.208],[0.866,0.261],[0.885,0.318],[0.904,0.375],[0.918,0.426],[0.916,0.45],[0.89,0.453],[0.844,0.434],[0.791,0.416],[0.739,0.385],[0.688,0.352],[0.638,0.321],[0.596,0.309],[0.559,0.339],[0.536,0.4],[0.51,0.443],[0.478,0.507],[0.445,0.513],[0.415,0.488],[0.387,0.441],[0.359,0.387],[0.333,0.337],[0.299,0.319],[0.259,0.292],[0.298,0.218],[0.307,0.282],[0.357,0.261],[0.394,0.237],[0.416,0.188],[0.425,0.131],[0.44,0.078],[0.461,0.047],[0.492,0.043],[0.534,0.071],[0.579,0.105],[0.613,0.149],[0.643,0.179],[0.671,0.176],[0.761,0.144],[0.821,0.137],[0.795,0.075],[0.752,0.033],[0.701,0.012],[0.658,0.019],[0.625,0.062],[0.608,0.12],[0.601,0.17],[0.589,0.201],[0.567,0.204],[0.532,0.182],[0.49,0.143],[0.447,0.105],[0.412,0.079],[0.375,0.077],[0.293,0.113],[0.361,0.088],[0.352,0.144],[0.329,0.201],[0.255,0.252],[0.287,0.307],[0.324,0.346],[0.348,0.372],[0.379,0.365],[0.417,0.333],[0.454,0.29],[0.487,0.243],[0.514,0.218],[0.533,0.221],[0.551,0.253],[0.586,0.305],[0.649,0.352],[0.604,0.371],[0.555,0.406],[0.54,0.4],[0.508,0.36],[0.487,0.302],[0.471,0.246],[0.448,0.212],[0.423,0.202],[0.398,0.224],[0.367,0.263],[0.336,0.316],[0.296,0.355],[0.269,0.366],[0.239,0.348],[0.205,0.323],[0.17,0.275],[0.131,0.236],[0.106,0.208],[0.083,0.203],[0.06,0.241],[0.003,0.284],[0.053,0.311],[0.108,0.319],[0.134,0.286],[0.15,0.233],[0.164,0.2],[0.183,0.179],[0.22,0.185],[0.235,0.21],[0.23,0.129],[0.194,0.201],[0.153,0.243],[0.111,0.271],[0.082,0.268],[0.06,0.242],[0.05,0.197],[0.051,0.128],[0.027,0.078]]},"method":"X-ray","resolution":3.0,"rna_type":"Amino-acid riboswitch","rna_group":"Riboswitch","num_chains":1,"total_rna_len":161,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["junction","internal loop","hairpin loop","bulge","stem"],"rmsd":0.54,"host_chain_rmsd":0.54,"pocket_rmsd":0.79,"lig_bsa":304.6,"ligand_burial":0.995,"tm_score":0.99,"rg_apo":28.61,"rg_holo":28.59,"rg_delta":-0.02,"bp_rewire_src":"dssr","bp_formed":2,"bp_broken":0,"bp_conserved":78,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":54,"maxd":2.2,"water":2,"hbonds":4,"mw":131.2,"logp":0.59,"thumb_img":true,"thumb_v":1785389622,"apo_alts":[],"n_apo_copies":0},{"id":"4ERL_LYS_A_B_201_pocket","title":"4ERL (LYS) vs 3D0X (apo)","struct_title":"Crystal structure of the lysine riboswitch bound to a lysine-glycine dipeptide","holo_pdb":"4ERL","ligand":"LYS","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"201","apo_pdb":"3D0X","apo_chain":"A","holo_len":161,"apo_len":161,"pocket_size":18,"thumb":{"holo":[[0.104,0.084],[0.116,0.119],[0.125,0.173],[0.134,0.23],[0.138,0.277],[0.15,0.307],[0.173,0.328],[0.218,0.333],[0.267,0.379],[0.345,0.413],[0.299,0.346],[0.336,0.313],[0.373,0.311],[0.405,0.329],[0.432,0.371],[0.463,0.426],[0.498,0.45],[0.534,0.503],[0.558,0.494],[0.578,0.477],[0.603,0.434],[0.644,0.396],[0.702,0.425],[0.755,0.451],[0.727,0.384],[0.746,0.335],[0.788,0.334],[0.842,0.354],[0.899,0.376],[0.941,0.388],[0.972,0.385],[0.98,0.362],[0.963,0.316],[0.931,0.27],[0.909,0.213],[0.937,0.159],[0.905,0.11],[0.866,0.14],[0.815,0.154],[0.738,0.157],[0.669,0.166],[0.669,0.105],[0.693,0.053],[0.728,0.013],[0.774,0.003],[0.823,0.026],[0.869,0.058],[0.903,0.099],[0.956,0.12],[1.0,0.16],[0.923,0.142],[0.878,0.167],[0.86,0.208],[0.863,0.259],[0.883,0.318],[0.901,0.373],[0.915,0.425],[0.911,0.449],[0.887,0.452],[0.842,0.435],[0.788,0.416],[0.734,0.382],[0.686,0.351],[0.636,0.323],[0.592,0.309],[0.556,0.341],[0.532,0.4],[0.507,0.44],[0.471,0.503],[0.439,0.51],[0.41,0.484],[0.382,0.437],[0.356,0.383],[0.33,0.331],[0.298,0.315],[0.258,0.295],[0.297,0.213],[0.305,0.279],[0.353,0.257],[0.393,0.237],[0.414,0.189],[0.426,0.13],[0.44,0.078],[0.461,0.048],[0.494,0.043],[0.534,0.072],[0.579,0.108],[0.612,0.151],[0.642,0.181],[0.669,0.177],[0.76,0.147],[0.82,0.138],[0.795,0.079],[0.751,0.035],[0.699,0.013],[0.654,0.022],[0.623,0.063],[0.607,0.119],[0.599,0.173],[0.588,0.203],[0.565,0.206],[0.531,0.182],[0.49,0.143],[0.448,0.104],[0.413,0.077],[0.377,0.076],[0.297,0.11],[0.365,0.088],[0.354,0.142],[0.332,0.199],[0.257,0.249],[0.287,0.303],[0.324,0.344],[0.347,0.362],[0.376,0.358],[0.413,0.326],[0.45,0.282],[0.485,0.237],[0.512,0.212],[0.531,0.218],[0.549,0.251],[0.581,0.304],[0.645,0.351],[0.597,0.373],[0.549,0.406],[0.537,0.4],[0.505,0.36],[0.486,0.301],[0.469,0.245],[0.446,0.211],[0.422,0.197],[0.394,0.214],[0.363,0.254],[0.33,0.302],[0.29,0.338],[0.266,0.358],[0.239,0.345],[0.204,0.319],[0.169,0.269],[0.13,0.229],[0.107,0.199],[0.084,0.199],[0.057,0.239],[0.0,0.277],[0.049,0.307],[0.102,0.315],[0.13,0.284],[0.148,0.232],[0.163,0.195],[0.185,0.176],[0.222,0.184],[0.236,0.21],[0.228,0.128],[0.191,0.199],[0.15,0.241],[0.111,0.274],[0.082,0.277],[0.059,0.255],[0.05,0.212],[0.047,0.15],[0.023,0.091]],"apo":[[0.109,0.075],[0.118,0.107],[0.125,0.159],[0.133,0.217],[0.138,0.266],[0.15,0.298],[0.171,0.323],[0.21,0.341],[0.266,0.365],[0.325,0.426],[0.299,0.347],[0.338,0.316],[0.373,0.316],[0.404,0.335],[0.433,0.376],[0.464,0.428],[0.5,0.452],[0.538,0.507],[0.561,0.494],[0.581,0.476],[0.605,0.431],[0.647,0.393],[0.704,0.424],[0.755,0.45],[0.729,0.382],[0.747,0.336],[0.789,0.333],[0.843,0.353],[0.9,0.378],[0.943,0.389],[0.971,0.386],[0.982,0.362],[0.962,0.316],[0.933,0.271],[0.906,0.208],[0.938,0.158],[0.907,0.111],[0.868,0.14],[0.815,0.154],[0.74,0.156],[0.669,0.164],[0.67,0.106],[0.694,0.051],[0.729,0.012],[0.772,0.0],[0.819,0.024],[0.865,0.055],[0.903,0.1],[0.953,0.119],[0.996,0.157],[0.922,0.142],[0.88,0.166],[0.859,0.207],[0.863,0.259],[0.882,0.316],[0.901,0.373],[0.914,0.424],[0.913,0.449],[0.887,0.453],[0.841,0.434],[0.788,0.417],[0.736,0.386],[0.685,0.353],[0.636,0.322],[0.594,0.309],[0.556,0.338],[0.534,0.399],[0.508,0.443],[0.476,0.507],[0.443,0.513],[0.413,0.489],[0.385,0.442],[0.357,0.389],[0.331,0.339],[0.297,0.32],[0.257,0.293],[0.297,0.219],[0.306,0.283],[0.356,0.261],[0.393,0.237],[0.414,0.188],[0.424,0.13],[0.438,0.078],[0.459,0.048],[0.49,0.045],[0.531,0.073],[0.577,0.107],[0.611,0.151],[0.641,0.18],[0.668,0.176],[0.759,0.144],[0.818,0.137],[0.792,0.076],[0.749,0.034],[0.699,0.013],[0.656,0.019],[0.622,0.062],[0.606,0.119],[0.599,0.169],[0.587,0.201],[0.565,0.205],[0.53,0.184],[0.488,0.146],[0.445,0.108],[0.41,0.081],[0.373,0.078],[0.291,0.113],[0.36,0.087],[0.35,0.143],[0.328,0.2],[0.253,0.251],[0.286,0.305],[0.322,0.344],[0.346,0.369],[0.378,0.361],[0.415,0.329],[0.452,0.286],[0.486,0.24],[0.512,0.215],[0.531,0.219],[0.549,0.252],[0.584,0.304],[0.646,0.351],[0.601,0.369],[0.553,0.403],[0.538,0.399],[0.506,0.359],[0.485,0.301],[0.469,0.245],[0.446,0.21],[0.421,0.2],[0.396,0.22],[0.366,0.259],[0.334,0.312],[0.295,0.351],[0.267,0.362],[0.238,0.346],[0.204,0.322],[0.169,0.273],[0.13,0.234],[0.106,0.206],[0.082,0.2],[0.059,0.238],[0.003,0.279],[0.052,0.307],[0.107,0.314],[0.133,0.281],[0.149,0.229],[0.163,0.197],[0.182,0.177],[0.219,0.183],[0.234,0.209],[0.229,0.129],[0.193,0.2],[0.152,0.242],[0.11,0.271],[0.081,0.268],[0.059,0.244],[0.049,0.199],[0.05,0.131],[0.026,0.08]]},"method":"X-ray","resolution":3.0,"rna_type":"Amino-acid riboswitch","rna_group":"Riboswitch","num_chains":1,"total_rna_len":161,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["junction","internal loop","hairpin loop","bulge","stem"],"rmsd":0.59,"host_chain_rmsd":0.59,"pocket_rmsd":0.73,"lig_bsa":313.4,"ligand_burial":1.0,"tm_score":0.988,"rg_apo":28.61,"rg_holo":28.6,"rg_delta":-0.01,"bp_rewire_src":"dssr","bp_formed":3,"bp_broken":1,"bp_conserved":77,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":55,"maxd":2.3,"water":1,"hbonds":3,"mw":147.2,"logp":-1.19,"thumb_img":true,"thumb_v":1785389622,"apo_alts":[],"n_apo_copies":0},{"id":"4F8U_SIS_A_C_101_pocket","title":"4F8U (SIS) vs 3BNL (apo)","struct_title":"Crystal structure of the bacterial ribosomal decoding site in complex with sisomicin (C2 form)","holo_pdb":"4F8U","ligand":"SIS","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"B","lig_resseq":"101","apo_pdb":"3BNL","apo_chain":"B","holo_len":22,"apo_len":22,"pocket_size":16,"thumb":{"holo":[[0.002,0.146],[0.057,0.215],[0.123,0.261],[0.195,0.272],[0.265,0.239],[0.322,0.166],[0.366,0.079],[0.409,0.017],[0.457,0.0],[0.493,0.041],[0.516,0.108],[0.553,0.192],[0.596,0.27],[0.639,0.344],[0.7,0.369],[0.856,0.414],[0.917,0.361],[0.833,0.239],[0.853,0.138],[0.881,0.055],[0.916,0.007],[0.977,0.001]],"apo":[[0.0,0.083],[0.054,0.161],[0.117,0.234],[0.178,0.274],[0.239,0.258],[0.304,0.22],[0.358,0.148],[0.4,0.085],[0.434,0.058],[0.475,0.061],[0.511,0.115],[0.558,0.194],[0.611,0.268],[0.669,0.308],[0.737,0.314],[0.886,0.389],[0.851,0.294],[0.848,0.198],[0.856,0.094],[0.895,0.044],[0.946,0.048],[1.0,0.084]]},"method":"X-ray","resolution":2.0,"rna_type":"Ribosomal RNA","rna_group":"Protein synthesis","num_chains":2,"total_rna_len":43,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["internal loop","stem"],"rmsd":3.8,"host_chain_rmsd":3.5,"pocket_rmsd":4.08,"lig_bsa":436.3,"ligand_burial":0.709,"tm_score":0.235,"rg_apo":19.07,"rg_holo":19.19,"rg_delta":0.12,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":2,"bp_conserved":18,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":16,"maxd":6.9,"water":6,"hbonds":7,"mw":447.5,"logp":-3.85,"thumb_img":true,"thumb_v":1785488731,"apo_alts":[],"n_apo_copies":0},{"id":"4F8U_SIS_B_D_101_pocket","title":"4F8U (SIS) vs 3BNL (apo)","struct_title":"Crystal structure of the bacterial ribosomal decoding site in complex with sisomicin (C2 form)","holo_pdb":"4F8U","ligand":"SIS","holo_chain":"B","holo_rna_chain":"B","lig_auth_chain":"B","nearest_rna_chain":"A","lig_resseq":"101","apo_pdb":"3BNL","apo_chain":"B","holo_len":21,"apo_len":22,"pocket_size":16,"thumb":{"holo":[[0.061,0.263],[0.137,0.317],[0.217,0.336],[0.286,0.311],[0.327,0.234],[0.356,0.14],[0.386,0.066],[0.435,0.0],[0.483,0.036],[0.518,0.082],[0.563,0.157],[0.605,0.235],[0.637,0.322],[0.69,0.374],[0.831,0.444],[0.854,0.421],[0.813,0.294],[0.846,0.193],[0.895,0.11],[0.944,0.081],[0.986,0.059]],"apo":[[0.0,0.098],[0.052,0.168],[0.114,0.243],[0.174,0.296],[0.235,0.298],[0.3,0.274],[0.355,0.209],[0.398,0.137],[0.434,0.093],[0.475,0.078],[0.511,0.112],[0.557,0.183],[0.608,0.262],[0.664,0.315],[0.732,0.341],[0.879,0.421],[0.845,0.355],[0.843,0.265],[0.853,0.156],[0.895,0.093],[0.946,0.077],[1.0,0.098]]},"method":"X-ray","resolution":2.0,"rna_type":"Ribosomal RNA","rna_group":"Protein synthesis","num_chains":2,"total_rna_len":43,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":95,"pocket_motifs":["internal loop","stem"],"rmsd":3.9,"host_chain_rmsd":3.45,"pocket_rmsd":4.51,"lig_bsa":435.9,"ligand_burial":0.705,"tm_score":0.287,"rg_apo":18.21,"rg_holo":18.09,"rg_delta":-0.12,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":2,"bp_conserved":18,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":16,"maxd":8.2,"water":3,"hbonds":7,"mw":447.5,"logp":-3.85,"thumb_img":true,"thumb_v":1785488731,"apo_alts":[],"n_apo_copies":0},{"id":"4F8V_SIS_A_C_101_pocket","title":"4F8V (SIS) vs 3BNL (apo)","struct_title":"Crystal structure of the bacterial ribosomal decoding site in complex with sisomicin (P21212 form)","holo_pdb":"4F8V","ligand":"SIS","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"B","lig_resseq":"101","apo_pdb":"3BNL","apo_chain":"B","holo_len":21,"apo_len":22,"pocket_size":16,"thumb":{"holo":[[0.037,0.227],[0.103,0.157],[0.177,0.127],[0.242,0.142],[0.304,0.203],[0.353,0.291],[0.403,0.357],[0.458,0.393],[0.503,0.364],[0.532,0.306],[0.566,0.225],[0.599,0.137],[0.639,0.081],[0.699,0.065],[0.838,0.0],[0.888,0.048],[0.821,0.181],[0.85,0.283],[0.892,0.354],[0.943,0.383],[1.0,0.366]],"apo":[[0.0,0.34],[0.052,0.263],[0.113,0.188],[0.173,0.142],[0.233,0.151],[0.298,0.184],[0.354,0.252],[0.397,0.318],[0.434,0.35],[0.475,0.352],[0.51,0.304],[0.556,0.226],[0.607,0.149],[0.663,0.103],[0.73,0.09],[0.876,0.01],[0.842,0.096],[0.842,0.191],[0.852,0.297],[0.894,0.351],[0.946,0.353],[1.0,0.32]]},"method":"X-ray","resolution":2.8,"rna_type":"Ribosomal RNA","rna_group":"Protein synthesis","num_chains":2,"total_rna_len":42,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":95,"pocket_motifs":["internal loop","stem"],"rmsd":2.81,"host_chain_rmsd":2.1,"pocket_rmsd":3.23,"lig_bsa":414.6,"ligand_burial":0.671,"tm_score":0.25,"rg_apo":18.21,"rg_holo":18.44,"rg_delta":0.23,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":2,"bp_conserved":18,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":16,"maxd":6.0,"water":0,"hbonds":6,"mw":447.5,"logp":-3.85,"thumb_img":true,"thumb_v":1785488731,"apo_alts":[],"n_apo_copies":0},{"id":"4F8V_SIS_B_D_101_pocket","title":"4F8V (SIS) vs 3BNL (apo)","struct_title":"Crystal structure of the bacterial ribosomal decoding site in complex with sisomicin (P21212 form)","holo_pdb":"4F8V","ligand":"SIS","holo_chain":"B","holo_rna_chain":"B","lig_auth_chain":"B","nearest_rna_chain":"A","lig_resseq":"101","apo_pdb":"3BNL","apo_chain":"A","holo_len":21,"apo_len":22,"pocket_size":17,"thumb":{"holo":[[0.045,0.167],[0.109,0.256],[0.185,0.305],[0.26,0.318],[0.314,0.259],[0.361,0.182],[0.403,0.095],[0.447,0.03],[0.493,0.0],[0.533,0.028],[0.566,0.093],[0.593,0.18],[0.621,0.269],[0.68,0.326],[0.774,0.438],[0.824,0.417],[0.811,0.279],[0.852,0.189],[0.9,0.108],[0.95,0.049],[1.0,0.041]],"apo":[[0.0,0.068],[0.049,0.127],[0.108,0.196],[0.168,0.261],[0.232,0.284],[0.297,0.274],[0.353,0.22],[0.397,0.143],[0.435,0.084],[0.476,0.05],[0.507,0.066],[0.552,0.124],[0.601,0.201],[0.657,0.266],[0.723,0.31],[0.798,0.378],[0.838,0.358],[0.84,0.277],[0.851,0.171],[0.893,0.102],[0.945,0.063],[0.999,0.071]]},"method":"X-ray","resolution":2.8,"rna_type":"Ribosomal RNA","rna_group":"Protein synthesis","num_chains":2,"total_rna_len":42,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":95,"pocket_motifs":["internal loop","stem"],"rmsd":2.8,"host_chain_rmsd":2.63,"pocket_rmsd":3.05,"lig_bsa":441.7,"ligand_burial":0.708,"tm_score":0.246,"rg_apo":17.97,"rg_holo":18.16,"rg_delta":0.19,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":2,"bp_conserved":18,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":16,"maxd":5.2,"water":0,"hbonds":8,"mw":447.5,"logp":-3.85,"thumb_img":true,"thumb_v":1785488732,"apo_alts":[],"n_apo_copies":0},{"id":"4GPW_6HS_A_C_101_pocket","title":"4GPW (6HS) vs 7EDN (apo)","struct_title":"Crystal structure of the protozoal cytoplasmic ribosomal decoding site in complex with 6'-hydroxysisomicin (P21212 form)","holo_pdb":"4GPW","ligand":"6HS","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"101","apo_pdb":"7EDN","apo_chain":"A","holo_len":22,"apo_len":22,"pocket_size":17,"thumb":{"holo":[[0.0,0.317],[0.039,0.218],[0.095,0.141],[0.169,0.093],[0.235,0.088],[0.295,0.141],[0.347,0.221],[0.4,0.304],[0.452,0.356],[0.492,0.365],[0.527,0.326],[0.556,0.249],[0.579,0.154],[0.619,0.078],[0.674,0.039],[0.83,0.038],[0.862,0.0],[0.792,0.122],[0.832,0.213],[0.882,0.288],[0.935,0.347],[1.0,0.351]],"apo":[[0.027,0.344],[0.059,0.243],[0.097,0.159],[0.153,0.105],[0.22,0.083],[0.293,0.106],[0.358,0.168],[0.39,0.255],[0.424,0.319],[0.461,0.336],[0.505,0.318],[0.543,0.249],[0.591,0.171],[0.644,0.108],[0.704,0.073],[0.772,0.071],[0.867,0.009],[0.804,0.138],[0.841,0.24],[0.893,0.306],[0.95,0.33],[0.998,0.305]]},"method":"X-ray","resolution":3.0,"rna_type":"Ribosomal RNA","rna_group":"Protein synthesis","num_chains":2,"total_rna_len":44,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":91,"global_identity":91,"pocket_motifs":["internal loop","stem"],"rmsd":2.71,"host_chain_rmsd":2.41,"pocket_rmsd":2.6,"lig_bsa":446.5,"ligand_burial":0.725,"tm_score":0.294,"rg_apo":19.32,"rg_holo":19.64,"rg_delta":0.32,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":2,"bp_conserved":18,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":16,"maxd":8.1,"water":0,"hbonds":8,"mw":448.5,"logp":-3.82,"thumb_img":true,"thumb_v":1785389621,"apo_alts":[],"n_apo_copies":0},{"id":"4GPW_6HS_A_D_102_pocket","title":"4GPW (6HS) vs 7EDN (apo)","struct_title":"Crystal structure of the protozoal cytoplasmic ribosomal decoding site in complex with 6'-hydroxysisomicin (P21212 form)","holo_pdb":"4GPW","ligand":"6HS","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"B","lig_resseq":"102","apo_pdb":"7EDN","apo_chain":"A","holo_len":22,"apo_len":22,"pocket_size":16,"thumb":{"holo":[[0.0,0.317],[0.039,0.218],[0.095,0.141],[0.169,0.093],[0.235,0.088],[0.295,0.141],[0.347,0.221],[0.4,0.304],[0.452,0.356],[0.492,0.365],[0.527,0.326],[0.556,0.249],[0.579,0.154],[0.619,0.078],[0.674,0.039],[0.83,0.038],[0.862,0.0],[0.792,0.122],[0.832,0.213],[0.882,0.288],[0.935,0.347],[1.0,0.351]],"apo":[[0.027,0.344],[0.059,0.243],[0.097,0.159],[0.153,0.105],[0.22,0.083],[0.293,0.106],[0.358,0.168],[0.39,0.255],[0.424,0.319],[0.461,0.336],[0.505,0.318],[0.543,0.249],[0.591,0.171],[0.644,0.108],[0.704,0.073],[0.772,0.071],[0.867,0.009],[0.804,0.138],[0.841,0.24],[0.893,0.306],[0.95,0.33],[0.998,0.305]]},"method":"X-ray","resolution":3.0,"rna_type":"Ribosomal RNA","rna_group":"Protein synthesis","num_chains":2,"total_rna_len":44,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":91,"global_identity":91,"pocket_motifs":["internal loop","stem"],"rmsd":2.71,"host_chain_rmsd":2.41,"pocket_rmsd":2.97,"lig_bsa":424.3,"ligand_burial":0.683,"tm_score":0.294,"rg_apo":19.32,"rg_holo":19.64,"rg_delta":0.32,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":2,"bp_conserved":18,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":16,"maxd":8.1,"water":0,"hbonds":6,"mw":448.5,"logp":-3.82,"thumb_img":true,"thumb_v":1785488732,"apo_alts":[],"n_apo_copies":0},{"id":"4GPX_6HS_A_C_101_pocket","title":"4GPX (6HS) vs 7EDN (apo)","struct_title":"Crystal structure of the protozoal cytoplasmic ribosomal decoding site in complex with 6'-hydroxysisomicin (P212121 form)","holo_pdb":"4GPX","ligand":"6HS","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"B","lig_resseq":"101","apo_pdb":"7EDN","apo_chain":"A","holo_len":21,"apo_len":22,"pocket_size":16,"thumb":{"holo":[[1.0,0.243],[0.934,0.159],[0.86,0.115],[0.788,0.097],[0.727,0.146],[0.674,0.23],[0.623,0.312],[0.573,0.369],[0.522,0.385],[0.487,0.345],[0.462,0.273],[0.433,0.182],[0.395,0.095],[0.338,0.056],[0.183,0.038],[0.148,0.0],[0.211,0.134],[0.163,0.225],[0.107,0.301],[0.058,0.344],[0.0,0.359]],"apo":[[0.994,0.375],[0.964,0.272],[0.927,0.184],[0.871,0.127],[0.803,0.102],[0.729,0.121],[0.661,0.183],[0.625,0.271],[0.589,0.338],[0.55,0.356],[0.506,0.338],[0.468,0.267],[0.421,0.187],[0.369,0.121],[0.307,0.081],[0.239,0.076],[0.143,0.01],[0.205,0.142],[0.165,0.245],[0.109,0.312],[0.05,0.337],[0.001,0.312]]},"method":"X-ray","resolution":2.6,"rna_type":"Ribosomal RNA","rna_group":"Protein synthesis","num_chains":2,"total_rna_len":42,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":91,"global_identity":91,"pocket_motifs":["internal loop","stem"],"rmsd":2.16,"host_chain_rmsd":1.99,"pocket_rmsd":2.2,"lig_bsa":439.7,"ligand_burial":0.716,"tm_score":0.343,"rg_apo":18.53,"rg_holo":18.96,"rg_delta":0.43,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":2,"bp_conserved":18,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":16,"maxd":5.0,"water":0,"hbonds":8,"mw":448.5,"logp":-3.82,"thumb_img":true,"thumb_v":1785488732,"apo_alts":[],"n_apo_copies":0},{"id":"4GPX_6HS_B_D_101_pocket","title":"4GPX (6HS) vs 7EDN (apo)","struct_title":"Crystal structure of the protozoal cytoplasmic ribosomal decoding site in complex with 6'-hydroxysisomicin (P212121 form)","holo_pdb":"4GPX","ligand":"6HS","holo_chain":"B","holo_rna_chain":"B","lig_auth_chain":"B","nearest_rna_chain":"A","lig_resseq":"101","apo_pdb":"7EDN","apo_chain":"A","holo_len":21,"apo_len":22,"pocket_size":16,"thumb":{"holo":[[0.0,0.249],[0.069,0.177],[0.142,0.125],[0.218,0.105],[0.281,0.145],[0.335,0.224],[0.386,0.307],[0.44,0.375],[0.485,0.39],[0.525,0.362],[0.552,0.287],[0.581,0.197],[0.617,0.12],[0.668,0.061],[0.824,0.041],[0.854,0.0],[0.805,0.131],[0.844,0.225],[0.894,0.305],[0.939,0.361],[0.994,0.372]],"apo":[[0.018,0.382],[0.048,0.282],[0.084,0.195],[0.14,0.135],[0.206,0.107],[0.28,0.123],[0.348,0.183],[0.383,0.271],[0.418,0.34],[0.457,0.362],[0.501,0.349],[0.538,0.282],[0.585,0.204],[0.637,0.137],[0.697,0.094],[0.765,0.086],[0.86,0.018],[0.798,0.145],[0.838,0.247],[0.893,0.315],[0.951,0.342],[1.0,0.323]]},"method":"X-ray","resolution":2.6,"rna_type":"Ribosomal RNA","rna_group":"Protein synthesis","num_chains":2,"total_rna_len":42,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":91,"global_identity":91,"pocket_motifs":["internal loop","stem"],"rmsd":2.16,"host_chain_rmsd":2.07,"pocket_rmsd":2.15,"lig_bsa":436.2,"ligand_burial":0.715,"tm_score":0.322,"rg_apo":18.53,"rg_holo":19.11,"rg_delta":0.58,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":2,"bp_conserved":18,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":16,"maxd":4.9,"water":1,"hbonds":8,"mw":448.5,"logp":-3.82,"thumb_img":true,"thumb_v":1785488732,"apo_alts":[],"n_apo_copies":0},{"id":"4K31_AM2_B_C_101_pocket","title":"4K31 (AM2) vs 2O3Y (apo)","struct_title":"Crystal structure of apramycin bound to the leishmanial rRNA A-site","holo_pdb":"4K31","ligand":"AM2","holo_chain":"B","holo_rna_chain":"B","lig_auth_chain":"B","nearest_rna_chain":"C","lig_resseq":"101","apo_pdb":"2O3Y","apo_chain":"B","holo_len":22,"apo_len":21,"pocket_size":19,"thumb":{"holo":[[0.048,0.033],[0.042,0.162],[0.096,0.239],[0.162,0.277],[0.243,0.25],[0.324,0.215],[0.372,0.139],[0.406,0.047],[0.444,0.0],[0.478,0.005],[0.511,0.062],[0.551,0.148],[0.58,0.24],[0.618,0.309],[0.658,0.352],[0.731,0.346],[0.864,0.348],[0.77,0.239],[0.8,0.141],[0.858,0.067],[0.927,0.032],[0.993,0.037]],"apo":[[0.0,0.125],[0.05,0.216],[0.12,0.267],[0.203,0.263],[0.283,0.234],[0.334,0.155],[0.376,0.064],[0.41,0.013],[0.442,0.028],[0.476,0.076],[0.526,0.152],[0.575,0.231],[0.635,0.289],[0.701,0.317],[0.858,0.338],[0.871,0.375],[0.808,0.232],[0.857,0.136],[0.914,0.071],[0.958,0.039],[1.0,0.053]]},"method":"X-ray","resolution":1.415,"rna_type":"Ribosomal RNA","rna_group":"Protein synthesis","num_chains":2,"total_rna_len":44,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":96,"global_identity":96,"pocket_motifs":["internal loop","stem","single strand"],"rmsd":3.37,"host_chain_rmsd":3.25,"pocket_rmsd":3.67,"lig_bsa":375.6,"ligand_burial":0.523,"tm_score":0.28,"rg_apo":19.18,"rg_holo":17.75,"rg_delta":-1.43,"bp_rewire_src":"dssr","bp_formed":3,"bp_broken":2,"bp_conserved":17,"bp_formed_wc":1,"bp_broken_wc":0,"bp_conserved_wc":15,"maxd":8.2,"water":8,"hbonds":4,"mw":539.6,"logp":-6.95,"thumb_img":true,"thumb_v":1785488732,"apo_alts":[{"pdb":"2FQN","rmsd":3.36,"host_chain_rmsd":3.36,"apo_chain":"B","apo_len":21,"identity":96,"global_identity":96,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.242,"rg_delta":-1.2,"pocket_rmsd":3.92,"maxd":8.2,"bp_formed":3,"bp_broken":2,"bp_conserved":17}],"n_apo_copies":0},{"id":"4K31_AM2_C_F_102_pocket","title":"4K31 (AM2) vs 2O3Y (apo)","struct_title":"Crystal structure of apramycin bound to the leishmanial rRNA A-site","holo_pdb":"4K31","ligand":"AM2","holo_chain":"C","holo_rna_chain":"C","lig_auth_chain":"C","nearest_rna_chain":"B","lig_resseq":"102","apo_pdb":"2O3Y","apo_chain":"B","holo_len":22,"apo_len":21,"pocket_size":19,"thumb":{"holo":[[0.048,0.34],[0.042,0.211],[0.097,0.134],[0.162,0.098],[0.242,0.127],[0.324,0.163],[0.372,0.238],[0.406,0.328],[0.444,0.374],[0.478,0.367],[0.512,0.306],[0.554,0.221],[0.578,0.13],[0.61,0.064],[0.662,0.02],[0.73,0.028],[0.87,0.025],[0.77,0.136],[0.8,0.236],[0.857,0.31],[0.927,0.343],[0.994,0.336]],"apo":[[0.0,0.248],[0.05,0.157],[0.12,0.107],[0.203,0.113],[0.284,0.142],[0.334,0.221],[0.376,0.312],[0.411,0.361],[0.442,0.345],[0.476,0.295],[0.526,0.219],[0.575,0.14],[0.635,0.083],[0.701,0.056],[0.858,0.036],[0.871,0.0],[0.808,0.144],[0.858,0.24],[0.914,0.304],[0.958,0.335],[1.0,0.32]]},"method":"X-ray","resolution":1.415,"rna_type":"Ribosomal RNA","rna_group":"Protein synthesis","num_chains":2,"total_rna_len":44,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":96,"global_identity":96,"pocket_motifs":["internal loop","stem","single strand"],"rmsd":3.38,"host_chain_rmsd":3.24,"pocket_rmsd":3.68,"lig_bsa":386.3,"ligand_burial":0.531,"tm_score":0.281,"rg_apo":19.18,"rg_holo":17.77,"rg_delta":-1.41,"bp_rewire_src":"dssr","bp_formed":3,"bp_broken":2,"bp_conserved":17,"bp_formed_wc":1,"bp_broken_wc":0,"bp_conserved_wc":15,"maxd":8.1,"water":8,"hbonds":6,"mw":539.6,"logp":-6.95,"thumb_img":true,"thumb_v":1785488732,"apo_alts":[{"pdb":"2FQN","rmsd":3.35,"host_chain_rmsd":3.35,"apo_chain":"B","apo_len":21,"identity":96,"global_identity":96,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.292,"rg_delta":-1.18,"pocket_rmsd":3.92,"maxd":8.1,"bp_formed":3,"bp_broken":2,"bp_conserved":17}],"n_apo_copies":0},{"id":"4K32_GET_A_C_101_pocket","title":"4K32 (GET) vs 2O3Y (apo)","struct_title":"Crystal structure of geneticin bound to the leishmanial rRNA A-site","holo_pdb":"4K32","ligand":"GET","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"101","apo_pdb":"2O3Y","apo_chain":"B","holo_len":21,"apo_len":21,"pocket_size":16,"thumb":{"holo":[[0.024,0.255],[0.088,0.183],[0.164,0.15],[0.229,0.159],[0.285,0.229],[0.332,0.31],[0.391,0.387],[0.443,0.414],[0.483,0.401],[0.51,0.349],[0.538,0.26],[0.569,0.166],[0.611,0.088],[0.666,0.059],[0.824,0.0],[0.851,0.047],[0.793,0.174],[0.824,0.281],[0.869,0.35],[0.912,0.403],[0.982,0.393]],"apo":[[0.0,0.292],[0.049,0.202],[0.118,0.154],[0.201,0.162],[0.281,0.193],[0.333,0.272],[0.375,0.36],[0.411,0.404],[0.443,0.382],[0.477,0.326],[0.526,0.247],[0.574,0.169],[0.633,0.115],[0.699,0.092],[0.855,0.071],[0.867,0.042],[0.805,0.191],[0.855,0.287],[0.913,0.347],[0.958,0.372],[1.0,0.35]]},"method":"X-ray","resolution":2.5,"rna_type":"Ribosomal RNA","rna_group":"Protein synthesis","num_chains":2,"total_rna_len":42,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":96,"global_identity":96,"pocket_motifs":["internal loop","stem"],"rmsd":3.24,"host_chain_rmsd":2.55,"pocket_rmsd":4.14,"lig_bsa":484.0,"ligand_burial":0.717,"tm_score":0.28,"rg_apo":19.18,"rg_holo":18.3,"rg_delta":-0.88,"bp_rewire_src":"dssr","bp_formed":1,"bp_broken":2,"bp_conserved":17,"bp_formed_wc":1,"bp_broken_wc":0,"bp_conserved_wc":15,"maxd":10.4,"water":0,"hbonds":8,"mw":496.6,"logp":-5.61,"thumb_img":true,"thumb_v":1785389621,"apo_alts":[{"pdb":"2FQN","rmsd":2.46,"host_chain_rmsd":2.46,"apo_chain":"B","apo_len":21,"identity":96,"global_identity":96,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.303,"rg_delta":-0.65,"pocket_rmsd":3.86,"maxd":9.4,"bp_formed":1,"bp_broken":2,"bp_conserved":17}],"n_apo_copies":0},{"id":"4K32_GET_B_D_101_pocket","title":"4K32 (GET) vs 2O3Y (apo)","struct_title":"Crystal structure of geneticin bound to the leishmanial rRNA A-site","holo_pdb":"4K32","ligand":"GET","holo_chain":"B","holo_rna_chain":"B","lig_auth_chain":"B","nearest_rna_chain":"A","lig_resseq":"101","apo_pdb":"2O3Y","apo_chain":"B","holo_len":21,"apo_len":21,"pocket_size":16,"thumb":{"holo":[[0.011,0.27],[0.077,0.193],[0.151,0.158],[0.227,0.149],[0.292,0.205],[0.337,0.292],[0.384,0.38],[0.439,0.435],[0.483,0.435],[0.512,0.393],[0.538,0.315],[0.573,0.227],[0.609,0.145],[0.657,0.092],[0.79,0.0],[0.847,0.038],[0.821,0.161],[0.844,0.268],[0.884,0.349],[0.924,0.403],[0.978,0.409]],"apo":[[0.0,0.313],[0.049,0.221],[0.117,0.165],[0.2,0.162],[0.281,0.186],[0.333,0.263],[0.376,0.355],[0.412,0.413],[0.443,0.407],[0.476,0.367],[0.525,0.294],[0.572,0.213],[0.632,0.149],[0.697,0.113],[0.853,0.089],[0.865,0.041],[0.805,0.177],[0.856,0.271],[0.914,0.339],[0.958,0.378],[1.0,0.373]]},"method":"X-ray","resolution":2.5,"rna_type":"Ribosomal RNA","rna_group":"Protein synthesis","num_chains":2,"total_rna_len":42,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":96,"global_identity":96,"pocket_motifs":["internal loop","stem"],"rmsd":3.06,"host_chain_rmsd":2.45,"pocket_rmsd":3.89,"lig_bsa":460.8,"ligand_burial":0.695,"tm_score":0.286,"rg_apo":19.18,"rg_holo":18.47,"rg_delta":-0.71,"bp_rewire_src":"dssr","bp_formed":1,"bp_broken":2,"bp_conserved":17,"bp_formed_wc":1,"bp_broken_wc":0,"bp_conserved_wc":15,"maxd":10.6,"water":0,"hbonds":8,"mw":496.6,"logp":-5.61,"thumb_img":true,"thumb_v":1785488732,"apo_alts":[{"pdb":"2FQN","rmsd":2.53,"host_chain_rmsd":2.53,"apo_chain":"B","apo_len":21,"identity":96,"global_identity":96,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.211,"rg_delta":-0.48,"pocket_rmsd":4.05,"maxd":10.9,"bp_formed":1,"bp_broken":2,"bp_conserved":17}],"n_apo_copies":0},{"id":"4LVV_FFO_A_B_101_pocket","title":"4LVV (FFO) vs 7KD1 (apo)","struct_title":"Structure of the THF riboswitch","holo_pdb":"4LVV","ligand":"FFO","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"101","apo_pdb":"7KD1","apo_chain":"A","holo_len":89,"apo_len":89,"pocket_size":16,"thumb":{"holo":[[0.019,0.371],[0.077,0.42],[0.132,0.446],[0.175,0.442],[0.216,0.429],[0.255,0.38],[0.316,0.303],[0.377,0.266],[0.419,0.296],[0.45,0.334],[0.487,0.387],[0.524,0.445],[0.556,0.497],[0.591,0.516],[0.622,0.495],[0.654,0.451],[0.679,0.39],[0.704,0.324],[0.745,0.287],[0.799,0.292],[0.855,0.221],[0.77,0.215],[0.722,0.222],[0.666,0.247],[0.63,0.243],[0.608,0.202],[0.595,0.128],[0.569,0.059],[0.535,0.011],[0.505,0.0],[0.473,0.02],[0.441,0.068],[0.416,0.138],[0.383,0.199],[0.345,0.229],[0.265,0.321],[0.198,0.323],[0.174,0.246],[0.183,0.179],[0.223,0.148],[0.281,0.149],[0.342,0.144],[0.38,0.134],[0.388,0.21],[0.428,0.222],[0.467,0.196],[0.504,0.148],[0.541,0.091],[0.572,0.03],[0.606,0.004],[0.636,0.015],[0.666,0.048],[0.696,0.105],[0.722,0.173],[0.765,0.237],[0.816,0.314],[0.854,0.338],[0.889,0.393],[0.918,0.451],[0.991,0.488],[0.931,0.505],[0.867,0.535],[0.841,0.492],[0.823,0.467],[0.798,0.414],[0.767,0.352],[0.708,0.311],[0.616,0.279],[0.661,0.31],[0.618,0.321],[0.58,0.368],[0.548,0.429],[0.515,0.483],[0.483,0.508],[0.456,0.505],[0.425,0.465],[0.391,0.405],[0.35,0.356],[0.283,0.278],[0.256,0.219],[0.187,0.184],[0.143,0.204],[0.114,0.243],[0.119,0.307],[0.13,0.379],[0.124,0.447],[0.097,0.484],[0.054,0.49],[0.0,0.463]],"apo":[[0.028,0.451],[0.088,0.487],[0.144,0.491],[0.185,0.462],[0.216,0.423],[0.243,0.362],[0.322,0.295],[0.369,0.249],[0.412,0.267],[0.444,0.303],[0.474,0.359],[0.504,0.422],[0.532,0.477],[0.567,0.503],[0.604,0.495],[0.642,0.458],[0.678,0.399],[0.709,0.335],[0.753,0.295],[0.803,0.304],[0.876,0.235],[0.786,0.225],[0.729,0.235],[0.675,0.251],[0.645,0.237],[0.632,0.184],[0.627,0.116],[0.614,0.053],[0.589,0.015],[0.547,0.01],[0.497,0.039],[0.448,0.081],[0.405,0.13],[0.372,0.168],[0.323,0.234],[0.264,0.308],[0.196,0.286],[0.157,0.223],[0.145,0.17],[0.166,0.131],[0.213,0.12],[0.294,0.119],[0.334,0.13],[0.352,0.163],[0.42,0.181],[0.455,0.198],[0.489,0.172],[0.53,0.131],[0.583,0.085],[0.634,0.051],[0.677,0.044],[0.721,0.052],[0.739,0.093],[0.752,0.163],[0.775,0.234],[0.825,0.315],[0.858,0.346],[0.897,0.406],[0.927,0.449],[1.0,0.479],[0.942,0.503],[0.884,0.532],[0.847,0.503],[0.82,0.476],[0.799,0.417],[0.772,0.352],[0.715,0.309],[0.63,0.279],[0.667,0.31],[0.624,0.324],[0.584,0.367],[0.543,0.421],[0.504,0.468],[0.465,0.49],[0.434,0.476],[0.408,0.433],[0.382,0.37],[0.349,0.313],[0.29,0.229],[0.217,0.212],[0.15,0.21],[0.113,0.226],[0.099,0.254],[0.112,0.298],[0.131,0.364],[0.136,0.443],[0.117,0.499],[0.071,0.538],[0.009,0.562]]},"method":"X-ray","resolution":2.1,"rna_type":"Enzyme cofactor riboswitch","rna_group":"Riboswitch","num_chains":1,"total_rna_len":89,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["junction","hairpin loop","bulge","stem"],"rmsd":3.6,"host_chain_rmsd":3.6,"pocket_rmsd":4.83,"lig_bsa":291.0,"ligand_burial":0.566,"tm_score":0.642,"rg_apo":23.35,"rg_holo":22.83,"rg_delta":-0.52,"bp_rewire_src":"dssr","bp_formed":2,"bp_broken":1,"bp_conserved":41,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":30,"maxd":9.3,"water":1,"hbonds":4,"mw":473.4,"logp":-0.73,"thumb_img":true,"thumb_v":1785389621,"apo_alts":[],"n_apo_copies":0},{"id":"4LVV_FFO_A_C_102_pocket","title":"4LVV (FFO) vs 7KD1 (apo)","struct_title":"Structure of the THF riboswitch","holo_pdb":"4LVV","ligand":"FFO","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"102","apo_pdb":"7KD1","apo_chain":"A","holo_len":89,"apo_len":89,"pocket_size":13,"thumb":{"holo":[[0.019,0.371],[0.077,0.42],[0.132,0.446],[0.175,0.442],[0.216,0.429],[0.255,0.38],[0.316,0.303],[0.377,0.266],[0.419,0.296],[0.45,0.334],[0.487,0.387],[0.524,0.445],[0.556,0.497],[0.591,0.516],[0.622,0.495],[0.654,0.451],[0.679,0.39],[0.704,0.324],[0.745,0.287],[0.799,0.292],[0.855,0.221],[0.77,0.215],[0.722,0.222],[0.666,0.247],[0.63,0.243],[0.608,0.202],[0.595,0.128],[0.569,0.059],[0.535,0.011],[0.505,0.0],[0.473,0.02],[0.441,0.068],[0.416,0.138],[0.383,0.199],[0.345,0.229],[0.265,0.321],[0.198,0.323],[0.174,0.246],[0.183,0.179],[0.223,0.148],[0.281,0.149],[0.342,0.144],[0.38,0.134],[0.388,0.21],[0.428,0.222],[0.467,0.196],[0.504,0.148],[0.541,0.091],[0.572,0.03],[0.606,0.004],[0.636,0.015],[0.666,0.048],[0.696,0.105],[0.722,0.173],[0.765,0.237],[0.816,0.314],[0.854,0.338],[0.889,0.393],[0.918,0.451],[0.991,0.488],[0.931,0.505],[0.867,0.535],[0.841,0.492],[0.823,0.467],[0.798,0.414],[0.767,0.352],[0.708,0.311],[0.616,0.279],[0.661,0.31],[0.618,0.321],[0.58,0.368],[0.548,0.429],[0.515,0.483],[0.483,0.508],[0.456,0.505],[0.425,0.465],[0.391,0.405],[0.35,0.356],[0.283,0.278],[0.256,0.219],[0.187,0.184],[0.143,0.204],[0.114,0.243],[0.119,0.307],[0.13,0.379],[0.124,0.447],[0.097,0.484],[0.054,0.49],[0.0,0.463]],"apo":[[0.028,0.451],[0.088,0.487],[0.144,0.491],[0.185,0.462],[0.216,0.423],[0.243,0.362],[0.322,0.295],[0.369,0.249],[0.412,0.267],[0.444,0.303],[0.474,0.359],[0.504,0.422],[0.532,0.477],[0.567,0.503],[0.604,0.495],[0.642,0.458],[0.678,0.399],[0.709,0.335],[0.753,0.295],[0.803,0.304],[0.876,0.235],[0.786,0.225],[0.729,0.235],[0.675,0.251],[0.645,0.237],[0.632,0.184],[0.627,0.116],[0.614,0.053],[0.589,0.015],[0.547,0.01],[0.497,0.039],[0.448,0.081],[0.405,0.13],[0.372,0.168],[0.323,0.234],[0.264,0.308],[0.196,0.286],[0.157,0.223],[0.145,0.17],[0.166,0.131],[0.213,0.12],[0.294,0.119],[0.334,0.13],[0.352,0.163],[0.42,0.181],[0.455,0.198],[0.489,0.172],[0.53,0.131],[0.583,0.085],[0.634,0.051],[0.677,0.044],[0.721,0.052],[0.739,0.093],[0.752,0.163],[0.775,0.234],[0.825,0.315],[0.858,0.346],[0.897,0.406],[0.927,0.449],[1.0,0.479],[0.942,0.503],[0.884,0.532],[0.847,0.503],[0.82,0.476],[0.799,0.417],[0.772,0.352],[0.715,0.309],[0.63,0.279],[0.667,0.31],[0.624,0.324],[0.584,0.367],[0.543,0.421],[0.504,0.468],[0.465,0.49],[0.434,0.476],[0.408,0.433],[0.382,0.37],[0.349,0.313],[0.29,0.229],[0.217,0.212],[0.15,0.21],[0.113,0.226],[0.099,0.254],[0.112,0.298],[0.131,0.364],[0.136,0.443],[0.117,0.499],[0.071,0.538],[0.009,0.562]]},"method":"X-ray","resolution":2.1,"rna_type":"Enzyme cofactor riboswitch","rna_group":"Riboswitch","num_chains":1,"total_rna_len":89,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["junction","bulge","stem"],"rmsd":3.6,"host_chain_rmsd":3.6,"pocket_rmsd":3.15,"lig_bsa":332.5,"ligand_burial":0.481,"tm_score":0.642,"rg_apo":23.35,"rg_holo":22.83,"rg_delta":-0.52,"bp_rewire_src":"dssr","bp_formed":2,"bp_broken":1,"bp_conserved":41,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":30,"maxd":9.3,"water":0,"hbonds":3,"mw":473.4,"logp":-0.73,"thumb_img":true,"thumb_v":1785389622,"apo_alts":[],"n_apo_copies":0},{"id":"4LVW_7DG_A_B_101_pocket","title":"4LVW (7DG) vs 7KD1 (apo)","struct_title":"Structure of the THF riboswitch bound to 7-deazaguanine","holo_pdb":"4LVW","ligand":"7DG","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"101","apo_pdb":"7KD1","apo_chain":"A","holo_len":89,"apo_len":89,"pocket_size":15,"thumb":{"holo":[[0.013,0.363],[0.072,0.413],[0.131,0.437],[0.18,0.435],[0.223,0.424],[0.261,0.377],[0.322,0.303],[0.382,0.266],[0.423,0.294],[0.453,0.328],[0.491,0.381],[0.526,0.438],[0.558,0.489],[0.589,0.508],[0.618,0.49],[0.65,0.45],[0.679,0.389],[0.703,0.323],[0.746,0.285],[0.801,0.288],[0.859,0.222],[0.773,0.212],[0.721,0.218],[0.669,0.24],[0.637,0.238],[0.618,0.197],[0.603,0.125],[0.58,0.056],[0.545,0.008],[0.512,0.0],[0.477,0.019],[0.445,0.067],[0.42,0.135],[0.389,0.197],[0.35,0.228],[0.272,0.319],[0.209,0.324],[0.185,0.247],[0.191,0.18],[0.229,0.148],[0.283,0.146],[0.335,0.146],[0.379,0.134],[0.393,0.213],[0.433,0.221],[0.471,0.194],[0.507,0.147],[0.543,0.091],[0.576,0.031],[0.612,0.005],[0.644,0.016],[0.675,0.048],[0.706,0.105],[0.738,0.166],[0.772,0.232],[0.822,0.309],[0.858,0.333],[0.893,0.388],[0.922,0.449],[0.994,0.489],[0.935,0.505],[0.872,0.538],[0.846,0.491],[0.828,0.462],[0.802,0.41],[0.773,0.346],[0.714,0.304],[0.629,0.274],[0.665,0.304],[0.621,0.321],[0.581,0.365],[0.548,0.426],[0.517,0.479],[0.487,0.503],[0.457,0.497],[0.426,0.46],[0.392,0.401],[0.355,0.35],[0.288,0.273],[0.257,0.212],[0.189,0.18],[0.146,0.203],[0.121,0.243],[0.129,0.306],[0.142,0.376],[0.135,0.443],[0.106,0.48],[0.059,0.486],[0.0,0.459]],"apo":[[0.035,0.445],[0.094,0.482],[0.151,0.485],[0.191,0.457],[0.222,0.419],[0.249,0.358],[0.328,0.292],[0.375,0.246],[0.417,0.264],[0.448,0.3],[0.478,0.356],[0.507,0.418],[0.535,0.472],[0.57,0.499],[0.607,0.492],[0.645,0.455],[0.681,0.396],[0.711,0.333],[0.755,0.293],[0.805,0.302],[0.877,0.234],[0.788,0.224],[0.732,0.233],[0.678,0.249],[0.648,0.235],[0.635,0.183],[0.631,0.115],[0.618,0.052],[0.593,0.015],[0.551,0.01],[0.502,0.038],[0.454,0.08],[0.41,0.128],[0.377,0.166],[0.328,0.231],[0.27,0.304],[0.203,0.282],[0.164,0.22],[0.152,0.167],[0.173,0.128],[0.22,0.117],[0.301,0.116],[0.34,0.127],[0.357,0.161],[0.425,0.179],[0.46,0.195],[0.494,0.17],[0.535,0.13],[0.587,0.084],[0.638,0.05],[0.681,0.043],[0.725,0.052],[0.742,0.093],[0.755,0.161],[0.777,0.233],[0.827,0.313],[0.859,0.344],[0.898,0.404],[0.928,0.446],[1.0,0.476],[0.942,0.5],[0.884,0.529],[0.848,0.5],[0.822,0.472],[0.801,0.413],[0.775,0.349],[0.717,0.307],[0.633,0.276],[0.67,0.307],[0.627,0.322],[0.587,0.364],[0.547,0.418],[0.507,0.465],[0.468,0.486],[0.438,0.472],[0.412,0.429],[0.387,0.366],[0.354,0.31],[0.296,0.226],[0.224,0.209],[0.157,0.206],[0.12,0.222],[0.107,0.25],[0.119,0.294],[0.137,0.36],[0.142,0.438],[0.123,0.494],[0.077,0.533],[0.016,0.556]]},"method":"X-ray","resolution":1.768,"rna_type":"Enzyme cofactor riboswitch","rna_group":"Riboswitch","num_chains":1,"total_rna_len":89,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["junction","hairpin loop","bulge","stem"],"rmsd":3.54,"host_chain_rmsd":3.54,"pocket_rmsd":4.68,"lig_bsa":223.1,"ligand_burial":0.794,"tm_score":0.646,"rg_apo":23.35,"rg_holo":22.91,"rg_delta":-0.44,"bp_rewire_src":"dssr","bp_formed":2,"bp_broken":1,"bp_conserved":41,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":30,"maxd":8.6,"water":0,"hbonds":4,"mw":150.1,"logp":-0.39,"thumb_img":true,"thumb_v":1785389622,"apo_alts":[],"n_apo_copies":0},{"id":"4LVW_7DG_A_C_102_pocket","title":"4LVW (7DG) vs 7KD1 (apo)","struct_title":"Structure of the THF riboswitch bound to 7-deazaguanine","holo_pdb":"4LVW","ligand":"7DG","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"102","apo_pdb":"7KD1","apo_chain":"A","holo_len":89,"apo_len":89,"pocket_size":13,"thumb":{"holo":[[0.013,0.363],[0.072,0.413],[0.131,0.437],[0.18,0.435],[0.223,0.424],[0.261,0.377],[0.322,0.303],[0.382,0.266],[0.423,0.294],[0.453,0.328],[0.491,0.381],[0.526,0.438],[0.558,0.489],[0.589,0.508],[0.618,0.49],[0.65,0.45],[0.679,0.389],[0.703,0.323],[0.746,0.285],[0.801,0.288],[0.859,0.222],[0.773,0.212],[0.721,0.218],[0.669,0.24],[0.637,0.238],[0.618,0.197],[0.603,0.125],[0.58,0.056],[0.545,0.008],[0.512,0.0],[0.477,0.019],[0.445,0.067],[0.42,0.135],[0.389,0.197],[0.35,0.228],[0.272,0.319],[0.209,0.324],[0.185,0.247],[0.191,0.18],[0.229,0.148],[0.283,0.146],[0.335,0.146],[0.379,0.134],[0.393,0.213],[0.433,0.221],[0.471,0.194],[0.507,0.147],[0.543,0.091],[0.576,0.031],[0.612,0.005],[0.644,0.016],[0.675,0.048],[0.706,0.105],[0.738,0.166],[0.772,0.232],[0.822,0.309],[0.858,0.333],[0.893,0.388],[0.922,0.449],[0.994,0.489],[0.935,0.505],[0.872,0.538],[0.846,0.491],[0.828,0.462],[0.802,0.41],[0.773,0.346],[0.714,0.304],[0.629,0.274],[0.665,0.304],[0.621,0.321],[0.581,0.365],[0.548,0.426],[0.517,0.479],[0.487,0.503],[0.457,0.497],[0.426,0.46],[0.392,0.401],[0.355,0.35],[0.288,0.273],[0.257,0.212],[0.189,0.18],[0.146,0.203],[0.121,0.243],[0.129,0.306],[0.142,0.376],[0.135,0.443],[0.106,0.48],[0.059,0.486],[0.0,0.459]],"apo":[[0.035,0.445],[0.094,0.482],[0.151,0.485],[0.191,0.457],[0.222,0.419],[0.249,0.358],[0.328,0.292],[0.375,0.246],[0.417,0.264],[0.448,0.3],[0.478,0.356],[0.507,0.418],[0.535,0.472],[0.57,0.499],[0.607,0.492],[0.645,0.455],[0.681,0.396],[0.711,0.333],[0.755,0.293],[0.805,0.302],[0.877,0.234],[0.788,0.224],[0.732,0.233],[0.678,0.249],[0.648,0.235],[0.635,0.183],[0.631,0.115],[0.618,0.052],[0.593,0.015],[0.551,0.01],[0.502,0.038],[0.454,0.08],[0.41,0.128],[0.377,0.166],[0.328,0.231],[0.27,0.304],[0.203,0.282],[0.164,0.22],[0.152,0.167],[0.173,0.128],[0.22,0.117],[0.301,0.116],[0.34,0.127],[0.357,0.161],[0.425,0.179],[0.46,0.195],[0.494,0.17],[0.535,0.13],[0.587,0.084],[0.638,0.05],[0.681,0.043],[0.725,0.052],[0.742,0.093],[0.755,0.161],[0.777,0.233],[0.827,0.313],[0.859,0.344],[0.898,0.404],[0.928,0.446],[1.0,0.476],[0.942,0.5],[0.884,0.529],[0.848,0.5],[0.822,0.472],[0.801,0.413],[0.775,0.349],[0.717,0.307],[0.633,0.276],[0.67,0.307],[0.627,0.322],[0.587,0.364],[0.547,0.418],[0.507,0.465],[0.468,0.486],[0.438,0.472],[0.412,0.429],[0.387,0.366],[0.354,0.31],[0.296,0.226],[0.224,0.209],[0.157,0.206],[0.12,0.222],[0.107,0.25],[0.119,0.294],[0.137,0.36],[0.142,0.438],[0.123,0.494],[0.077,0.533],[0.016,0.556]]},"method":"X-ray","resolution":1.768,"rna_type":"Enzyme cofactor riboswitch","rna_group":"Riboswitch","num_chains":1,"total_rna_len":89,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["junction","bulge","stem"],"rmsd":3.54,"host_chain_rmsd":3.54,"pocket_rmsd":2.91,"lig_bsa":220.9,"ligand_burial":0.783,"tm_score":0.646,"rg_apo":23.35,"rg_holo":22.91,"rg_delta":-0.44,"bp_rewire_src":"dssr","bp_formed":2,"bp_broken":1,"bp_conserved":41,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":30,"maxd":8.6,"water":0,"hbonds":2,"mw":150.1,"logp":-0.39,"thumb_img":true,"thumb_v":1785389622,"apo_alts":[],"n_apo_copies":0},{"id":"4LVX_H4B_A_B_101_pocket","title":"4LVX (H4B) vs 7KD1 (apo)","struct_title":"Structure of the THF riboswitch bound to tetrahydrobiopterin","holo_pdb":"4LVX","ligand":"H4B","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"101","apo_pdb":"7KD1","apo_chain":"A","holo_len":89,"apo_len":89,"pocket_size":13,"thumb":{"holo":[[0.009,0.372],[0.07,0.419],[0.13,0.439],[0.178,0.436],[0.223,0.423],[0.261,0.377],[0.322,0.302],[0.381,0.265],[0.424,0.292],[0.456,0.326],[0.493,0.378],[0.527,0.437],[0.556,0.49],[0.588,0.509],[0.618,0.491],[0.651,0.452],[0.68,0.391],[0.705,0.325],[0.747,0.287],[0.802,0.29],[0.86,0.224],[0.773,0.215],[0.721,0.22],[0.669,0.242],[0.637,0.238],[0.62,0.196],[0.604,0.123],[0.579,0.054],[0.543,0.008],[0.51,0.0],[0.475,0.02],[0.444,0.067],[0.419,0.135],[0.389,0.196],[0.35,0.228],[0.271,0.319],[0.208,0.322],[0.186,0.246],[0.191,0.181],[0.225,0.147],[0.281,0.146],[0.342,0.142],[0.376,0.133],[0.392,0.21],[0.433,0.22],[0.47,0.194],[0.507,0.148],[0.542,0.09],[0.575,0.03],[0.61,0.004],[0.642,0.013],[0.675,0.045],[0.704,0.103],[0.735,0.164],[0.772,0.233],[0.822,0.311],[0.858,0.334],[0.894,0.389],[0.923,0.449],[0.996,0.489],[0.938,0.505],[0.874,0.539],[0.848,0.492],[0.829,0.464],[0.803,0.411],[0.775,0.348],[0.715,0.306],[0.631,0.275],[0.665,0.306],[0.622,0.321],[0.582,0.367],[0.547,0.427],[0.513,0.477],[0.486,0.499],[0.459,0.496],[0.429,0.456],[0.393,0.396],[0.356,0.35],[0.286,0.272],[0.254,0.213],[0.186,0.183],[0.143,0.204],[0.12,0.244],[0.128,0.305],[0.142,0.375],[0.136,0.442],[0.107,0.482],[0.059,0.489],[0.0,0.464]],"apo":[[0.035,0.446],[0.095,0.482],[0.151,0.486],[0.191,0.457],[0.222,0.419],[0.249,0.358],[0.328,0.292],[0.374,0.246],[0.417,0.264],[0.448,0.3],[0.478,0.356],[0.507,0.418],[0.535,0.472],[0.57,0.499],[0.607,0.492],[0.645,0.455],[0.681,0.396],[0.711,0.333],[0.755,0.293],[0.805,0.301],[0.877,0.234],[0.788,0.224],[0.732,0.233],[0.678,0.249],[0.648,0.235],[0.635,0.183],[0.631,0.115],[0.618,0.052],[0.593,0.015],[0.551,0.01],[0.501,0.038],[0.453,0.08],[0.41,0.128],[0.377,0.166],[0.328,0.231],[0.27,0.305],[0.203,0.283],[0.164,0.221],[0.152,0.168],[0.172,0.129],[0.22,0.118],[0.3,0.117],[0.34,0.128],[0.357,0.161],[0.425,0.179],[0.46,0.196],[0.493,0.17],[0.534,0.13],[0.587,0.084],[0.637,0.05],[0.68,0.043],[0.724,0.052],[0.742,0.093],[0.755,0.161],[0.777,0.232],[0.826,0.312],[0.859,0.344],[0.898,0.403],[0.928,0.446],[1.0,0.476],[0.943,0.5],[0.885,0.529],[0.848,0.499],[0.822,0.472],[0.801,0.413],[0.774,0.349],[0.717,0.307],[0.633,0.276],[0.67,0.307],[0.627,0.322],[0.587,0.364],[0.547,0.418],[0.507,0.465],[0.469,0.486],[0.438,0.472],[0.412,0.429],[0.387,0.367],[0.354,0.31],[0.296,0.227],[0.224,0.209],[0.157,0.207],[0.12,0.222],[0.107,0.251],[0.119,0.295],[0.137,0.361],[0.142,0.439],[0.123,0.494],[0.077,0.533],[0.017,0.557]]},"method":"X-ray","resolution":1.9,"rna_type":"Enzyme cofactor riboswitch","rna_group":"Riboswitch","num_chains":1,"total_rna_len":89,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["junction","bulge","stem"],"rmsd":3.43,"host_chain_rmsd":3.43,"pocket_rmsd":2.83,"lig_bsa":300.1,"ligand_burial":0.758,"tm_score":0.65,"rg_apo":23.35,"rg_holo":22.97,"rg_delta":-0.38,"bp_rewire_src":"dssr","bp_formed":2,"bp_broken":1,"bp_conserved":41,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":30,"maxd":8.2,"water":0,"hbonds":3,"mw":241.3,"logp":-1.7,"thumb_img":true,"thumb_v":1785389621,"apo_alts":[],"n_apo_copies":0},{"id":"4LVX_H4B_A_C_102_pocket","title":"4LVX (H4B) vs 7KD1 (apo)","struct_title":"Structure of the THF riboswitch bound to tetrahydrobiopterin","holo_pdb":"4LVX","ligand":"H4B","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"102","apo_pdb":"7KD1","apo_chain":"A","holo_len":89,"apo_len":89,"pocket_size":15,"thumb":{"holo":[[0.009,0.372],[0.07,0.419],[0.13,0.439],[0.178,0.436],[0.223,0.423],[0.261,0.377],[0.322,0.302],[0.381,0.265],[0.424,0.292],[0.456,0.326],[0.493,0.378],[0.527,0.437],[0.556,0.49],[0.588,0.509],[0.618,0.491],[0.651,0.452],[0.68,0.391],[0.705,0.325],[0.747,0.287],[0.802,0.29],[0.86,0.224],[0.773,0.215],[0.721,0.22],[0.669,0.242],[0.637,0.238],[0.62,0.196],[0.604,0.123],[0.579,0.054],[0.543,0.008],[0.51,0.0],[0.475,0.02],[0.444,0.067],[0.419,0.135],[0.389,0.196],[0.35,0.228],[0.271,0.319],[0.208,0.322],[0.186,0.246],[0.191,0.181],[0.225,0.147],[0.281,0.146],[0.342,0.142],[0.376,0.133],[0.392,0.21],[0.433,0.22],[0.47,0.194],[0.507,0.148],[0.542,0.09],[0.575,0.03],[0.61,0.004],[0.642,0.013],[0.675,0.045],[0.704,0.103],[0.735,0.164],[0.772,0.233],[0.822,0.311],[0.858,0.334],[0.894,0.389],[0.923,0.449],[0.996,0.489],[0.938,0.505],[0.874,0.539],[0.848,0.492],[0.829,0.464],[0.803,0.411],[0.775,0.348],[0.715,0.306],[0.631,0.275],[0.665,0.306],[0.622,0.321],[0.582,0.367],[0.547,0.427],[0.513,0.477],[0.486,0.499],[0.459,0.496],[0.429,0.456],[0.393,0.396],[0.356,0.35],[0.286,0.272],[0.254,0.213],[0.186,0.183],[0.143,0.204],[0.12,0.244],[0.128,0.305],[0.142,0.375],[0.136,0.442],[0.107,0.482],[0.059,0.489],[0.0,0.464]],"apo":[[0.035,0.446],[0.095,0.482],[0.151,0.486],[0.191,0.457],[0.222,0.419],[0.249,0.358],[0.328,0.292],[0.374,0.246],[0.417,0.264],[0.448,0.3],[0.478,0.356],[0.507,0.418],[0.535,0.472],[0.57,0.499],[0.607,0.492],[0.645,0.455],[0.681,0.396],[0.711,0.333],[0.755,0.293],[0.805,0.301],[0.877,0.234],[0.788,0.224],[0.732,0.233],[0.678,0.249],[0.648,0.235],[0.635,0.183],[0.631,0.115],[0.618,0.052],[0.593,0.015],[0.551,0.01],[0.501,0.038],[0.453,0.08],[0.41,0.128],[0.377,0.166],[0.328,0.231],[0.27,0.305],[0.203,0.283],[0.164,0.221],[0.152,0.168],[0.172,0.129],[0.22,0.118],[0.3,0.117],[0.34,0.128],[0.357,0.161],[0.425,0.179],[0.46,0.196],[0.493,0.17],[0.534,0.13],[0.587,0.084],[0.637,0.05],[0.68,0.043],[0.724,0.052],[0.742,0.093],[0.755,0.161],[0.777,0.232],[0.826,0.312],[0.859,0.344],[0.898,0.403],[0.928,0.446],[1.0,0.476],[0.943,0.5],[0.885,0.529],[0.848,0.499],[0.822,0.472],[0.801,0.413],[0.774,0.349],[0.717,0.307],[0.633,0.276],[0.67,0.307],[0.627,0.322],[0.587,0.364],[0.547,0.418],[0.507,0.465],[0.469,0.486],[0.438,0.472],[0.412,0.429],[0.387,0.367],[0.354,0.31],[0.296,0.227],[0.224,0.209],[0.157,0.207],[0.12,0.222],[0.107,0.251],[0.119,0.295],[0.137,0.361],[0.142,0.439],[0.123,0.494],[0.077,0.533],[0.017,0.557]]},"method":"X-ray","resolution":1.9,"rna_type":"Enzyme cofactor riboswitch","rna_group":"Riboswitch","num_chains":1,"total_rna_len":89,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["junction","hairpin loop","bulge","stem"],"rmsd":3.43,"host_chain_rmsd":3.43,"pocket_rmsd":4.57,"lig_bsa":268.6,"ligand_burial":0.713,"tm_score":0.65,"rg_apo":23.35,"rg_holo":22.97,"rg_delta":-0.38,"bp_rewire_src":"dssr","bp_formed":2,"bp_broken":1,"bp_conserved":41,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":30,"maxd":8.2,"water":1,"hbonds":5,"mw":241.3,"logp":-1.7,"thumb_img":true,"thumb_v":1785389622,"apo_alts":[],"n_apo_copies":0},{"id":"4LVY_LYA_A_B_101_pocket","title":"4LVY (LYA) vs 7KD1 (apo)","struct_title":"Structure of the THF riboswitch bound to pemetrexed","holo_pdb":"4LVY","ligand":"LYA","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"101","apo_pdb":"7KD1","apo_chain":"A","holo_len":89,"apo_len":89,"pocket_size":11,"thumb":{"holo":[[0.017,0.36],[0.074,0.409],[0.132,0.432],[0.18,0.433],[0.222,0.42],[0.262,0.374],[0.321,0.298],[0.382,0.26],[0.423,0.289],[0.453,0.324],[0.492,0.378],[0.529,0.434],[0.559,0.485],[0.592,0.505],[0.623,0.486],[0.655,0.444],[0.682,0.383],[0.706,0.317],[0.747,0.279],[0.803,0.282],[0.858,0.215],[0.773,0.207],[0.722,0.213],[0.669,0.237],[0.635,0.236],[0.613,0.197],[0.596,0.126],[0.573,0.056],[0.54,0.008],[0.509,0.0],[0.477,0.017],[0.444,0.065],[0.42,0.133],[0.388,0.194],[0.35,0.223],[0.271,0.316],[0.207,0.321],[0.183,0.244],[0.191,0.179],[0.227,0.146],[0.283,0.142],[0.342,0.139],[0.379,0.127],[0.39,0.205],[0.431,0.216],[0.47,0.191],[0.508,0.145],[0.545,0.089],[0.577,0.029],[0.61,0.004],[0.64,0.015],[0.669,0.047],[0.698,0.105],[0.726,0.163],[0.77,0.23],[0.822,0.305],[0.858,0.328],[0.894,0.383],[0.922,0.443],[0.995,0.481],[0.937,0.498],[0.873,0.53],[0.847,0.485],[0.828,0.459],[0.803,0.405],[0.775,0.342],[0.714,0.3],[0.627,0.276],[0.666,0.301],[0.623,0.315],[0.583,0.362],[0.552,0.422],[0.52,0.473],[0.488,0.498],[0.46,0.495],[0.428,0.455],[0.394,0.397],[0.358,0.346],[0.288,0.268],[0.258,0.209],[0.189,0.177],[0.146,0.2],[0.12,0.241],[0.127,0.303],[0.139,0.373],[0.132,0.439],[0.103,0.475],[0.057,0.479],[0.0,0.453]],"apo":[[0.035,0.443],[0.095,0.479],[0.151,0.483],[0.192,0.454],[0.223,0.416],[0.25,0.355],[0.328,0.289],[0.374,0.243],[0.417,0.261],[0.448,0.296],[0.478,0.352],[0.507,0.414],[0.536,0.468],[0.571,0.494],[0.608,0.487],[0.645,0.451],[0.681,0.391],[0.711,0.328],[0.755,0.289],[0.805,0.297],[0.877,0.229],[0.787,0.219],[0.731,0.229],[0.677,0.244],[0.647,0.231],[0.635,0.178],[0.63,0.111],[0.617,0.048],[0.592,0.011],[0.55,0.006],[0.501,0.034],[0.453,0.077],[0.409,0.125],[0.377,0.163],[0.328,0.228],[0.27,0.301],[0.203,0.28],[0.164,0.218],[0.152,0.165],[0.172,0.126],[0.219,0.115],[0.3,0.113],[0.34,0.124],[0.357,0.157],[0.424,0.176],[0.459,0.192],[0.493,0.166],[0.534,0.126],[0.587,0.081],[0.637,0.046],[0.68,0.039],[0.723,0.048],[0.741,0.088],[0.754,0.157],[0.777,0.228],[0.826,0.308],[0.859,0.339],[0.898,0.398],[0.928,0.441],[1.0,0.471],[0.943,0.495],[0.885,0.524],[0.848,0.494],[0.822,0.467],[0.801,0.409],[0.774,0.344],[0.717,0.302],[0.633,0.272],[0.67,0.303],[0.627,0.317],[0.587,0.36],[0.547,0.414],[0.508,0.461],[0.469,0.482],[0.439,0.468],[0.412,0.425],[0.387,0.363],[0.354,0.306],[0.296,0.223],[0.223,0.206],[0.157,0.204],[0.12,0.219],[0.107,0.248],[0.119,0.292],[0.138,0.357],[0.143,0.436],[0.124,0.491],[0.078,0.53],[0.017,0.554]]},"method":"X-ray","resolution":2.0,"rna_type":"Enzyme cofactor riboswitch","rna_group":"Riboswitch","num_chains":1,"total_rna_len":89,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["junction","bulge","stem"],"rmsd":3.67,"host_chain_rmsd":3.67,"pocket_rmsd":2.96,"lig_bsa":280.2,"ligand_burial":0.574,"tm_score":0.633,"rg_apo":23.35,"rg_holo":22.9,"rg_delta":-0.45,"bp_rewire_src":"dssr","bp_formed":2,"bp_broken":1,"bp_conserved":41,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":30,"maxd":9.3,"water":1,"hbonds":2,"mw":427.4,"logp":0.67,"thumb_img":true,"thumb_v":1785389622,"apo_alts":[],"n_apo_copies":0},{"id":"4LVY_LYA_A_C_102_pocket","title":"4LVY (LYA) vs 7KD1 (apo)","struct_title":"Structure of the THF riboswitch bound to pemetrexed","holo_pdb":"4LVY","ligand":"LYA","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"102","apo_pdb":"7KD1","apo_chain":"A","holo_len":89,"apo_len":89,"pocket_size":15,"thumb":{"holo":[[0.017,0.36],[0.074,0.409],[0.132,0.432],[0.18,0.433],[0.222,0.42],[0.262,0.374],[0.321,0.298],[0.382,0.26],[0.423,0.289],[0.453,0.324],[0.492,0.378],[0.529,0.434],[0.559,0.485],[0.592,0.505],[0.623,0.486],[0.655,0.444],[0.682,0.383],[0.706,0.317],[0.747,0.279],[0.803,0.282],[0.858,0.215],[0.773,0.207],[0.722,0.213],[0.669,0.237],[0.635,0.236],[0.613,0.197],[0.596,0.126],[0.573,0.056],[0.54,0.008],[0.509,0.0],[0.477,0.017],[0.444,0.065],[0.42,0.133],[0.388,0.194],[0.35,0.223],[0.271,0.316],[0.207,0.321],[0.183,0.244],[0.191,0.179],[0.227,0.146],[0.283,0.142],[0.342,0.139],[0.379,0.127],[0.39,0.205],[0.431,0.216],[0.47,0.191],[0.508,0.145],[0.545,0.089],[0.577,0.029],[0.61,0.004],[0.64,0.015],[0.669,0.047],[0.698,0.105],[0.726,0.163],[0.77,0.23],[0.822,0.305],[0.858,0.328],[0.894,0.383],[0.922,0.443],[0.995,0.481],[0.937,0.498],[0.873,0.53],[0.847,0.485],[0.828,0.459],[0.803,0.405],[0.775,0.342],[0.714,0.3],[0.627,0.276],[0.666,0.301],[0.623,0.315],[0.583,0.362],[0.552,0.422],[0.52,0.473],[0.488,0.498],[0.46,0.495],[0.428,0.455],[0.394,0.397],[0.358,0.346],[0.288,0.268],[0.258,0.209],[0.189,0.177],[0.146,0.2],[0.12,0.241],[0.127,0.303],[0.139,0.373],[0.132,0.439],[0.103,0.475],[0.057,0.479],[0.0,0.453]],"apo":[[0.035,0.443],[0.095,0.479],[0.151,0.483],[0.192,0.454],[0.223,0.416],[0.25,0.355],[0.328,0.289],[0.374,0.243],[0.417,0.261],[0.448,0.296],[0.478,0.352],[0.507,0.414],[0.536,0.468],[0.571,0.494],[0.608,0.487],[0.645,0.451],[0.681,0.391],[0.711,0.328],[0.755,0.289],[0.805,0.297],[0.877,0.229],[0.787,0.219],[0.731,0.229],[0.677,0.244],[0.647,0.231],[0.635,0.178],[0.63,0.111],[0.617,0.048],[0.592,0.011],[0.55,0.006],[0.501,0.034],[0.453,0.077],[0.409,0.125],[0.377,0.163],[0.328,0.228],[0.27,0.301],[0.203,0.28],[0.164,0.218],[0.152,0.165],[0.172,0.126],[0.219,0.115],[0.3,0.113],[0.34,0.124],[0.357,0.157],[0.424,0.176],[0.459,0.192],[0.493,0.166],[0.534,0.126],[0.587,0.081],[0.637,0.046],[0.68,0.039],[0.723,0.048],[0.741,0.088],[0.754,0.157],[0.777,0.228],[0.826,0.308],[0.859,0.339],[0.898,0.398],[0.928,0.441],[1.0,0.471],[0.943,0.495],[0.885,0.524],[0.848,0.494],[0.822,0.467],[0.801,0.409],[0.774,0.344],[0.717,0.302],[0.633,0.272],[0.67,0.303],[0.627,0.317],[0.587,0.36],[0.547,0.414],[0.508,0.461],[0.469,0.482],[0.439,0.468],[0.412,0.425],[0.387,0.363],[0.354,0.306],[0.296,0.223],[0.223,0.206],[0.157,0.204],[0.12,0.219],[0.107,0.248],[0.119,0.292],[0.138,0.357],[0.143,0.436],[0.124,0.491],[0.078,0.53],[0.017,0.554]]},"method":"X-ray","resolution":2.0,"rna_type":"Enzyme cofactor riboswitch","rna_group":"Riboswitch","num_chains":1,"total_rna_len":89,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["junction","hairpin loop","bulge","stem"],"rmsd":3.67,"host_chain_rmsd":3.67,"pocket_rmsd":4.73,"lig_bsa":295.7,"ligand_burial":0.623,"tm_score":0.633,"rg_apo":23.35,"rg_holo":22.9,"rg_delta":-0.45,"bp_rewire_src":"dssr","bp_formed":2,"bp_broken":1,"bp_conserved":41,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":30,"maxd":9.3,"water":0,"hbonds":6,"mw":427.4,"logp":0.67,"thumb_img":true,"thumb_v":1785389622,"apo_alts":[],"n_apo_copies":0},{"id":"4LVZ_6AP_A_B_101_pocket","title":"4LVZ (6AP) vs 7KD1 (apo)","struct_title":"Structure of the THF riboswitch bound to 2,6-diaminopurine","holo_pdb":"4LVZ","ligand":"6AP","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"101","apo_pdb":"7KD1","apo_chain":"A","holo_len":89,"apo_len":89,"pocket_size":15,"thumb":{"holo":[[0.008,0.369],[0.072,0.417],[0.131,0.438],[0.18,0.435],[0.223,0.425],[0.261,0.377],[0.322,0.304],[0.38,0.267],[0.422,0.293],[0.452,0.327],[0.492,0.378],[0.528,0.435],[0.559,0.486],[0.588,0.506],[0.619,0.491],[0.651,0.449],[0.679,0.389],[0.703,0.322],[0.745,0.285],[0.801,0.289],[0.858,0.221],[0.772,0.213],[0.72,0.217],[0.668,0.24],[0.635,0.239],[0.615,0.199],[0.601,0.126],[0.577,0.057],[0.543,0.009],[0.51,0.0],[0.475,0.019],[0.442,0.067],[0.418,0.133],[0.389,0.196],[0.35,0.234],[0.272,0.319],[0.209,0.323],[0.185,0.247],[0.191,0.181],[0.226,0.147],[0.281,0.144],[0.342,0.143],[0.375,0.137],[0.391,0.214],[0.432,0.22],[0.47,0.195],[0.506,0.148],[0.541,0.091],[0.574,0.031],[0.61,0.005],[0.641,0.016],[0.673,0.05],[0.703,0.107],[0.732,0.168],[0.772,0.236],[0.823,0.313],[0.858,0.335],[0.894,0.389],[0.923,0.45],[0.996,0.488],[0.937,0.505],[0.873,0.538],[0.847,0.491],[0.829,0.464],[0.804,0.411],[0.774,0.349],[0.714,0.305],[0.629,0.277],[0.665,0.304],[0.62,0.32],[0.581,0.366],[0.547,0.427],[0.514,0.479],[0.487,0.5],[0.456,0.498],[0.425,0.459],[0.391,0.398],[0.354,0.35],[0.287,0.271],[0.256,0.213],[0.187,0.18],[0.145,0.204],[0.12,0.244],[0.129,0.308],[0.143,0.377],[0.136,0.443],[0.108,0.483],[0.059,0.488],[0.0,0.465]],"apo":[[0.034,0.447],[0.094,0.483],[0.15,0.487],[0.191,0.458],[0.222,0.42],[0.249,0.359],[0.327,0.292],[0.374,0.247],[0.416,0.265],[0.448,0.301],[0.477,0.356],[0.507,0.418],[0.535,0.473],[0.57,0.499],[0.607,0.492],[0.645,0.455],[0.68,0.396],[0.711,0.333],[0.755,0.293],[0.805,0.301],[0.877,0.234],[0.787,0.224],[0.731,0.233],[0.677,0.249],[0.647,0.235],[0.635,0.183],[0.63,0.115],[0.617,0.053],[0.592,0.015],[0.55,0.01],[0.501,0.038],[0.453,0.08],[0.409,0.128],[0.377,0.166],[0.328,0.232],[0.269,0.305],[0.202,0.283],[0.163,0.221],[0.151,0.168],[0.172,0.129],[0.219,0.118],[0.3,0.117],[0.339,0.128],[0.356,0.161],[0.424,0.18],[0.459,0.196],[0.493,0.17],[0.534,0.13],[0.586,0.084],[0.637,0.05],[0.68,0.043],[0.724,0.052],[0.741,0.093],[0.754,0.162],[0.777,0.233],[0.826,0.313],[0.859,0.344],[0.898,0.403],[0.928,0.446],[1.0,0.476],[0.942,0.5],[0.885,0.529],[0.848,0.5],[0.822,0.472],[0.801,0.414],[0.774,0.349],[0.717,0.307],[0.633,0.276],[0.67,0.307],[0.627,0.322],[0.587,0.364],[0.547,0.418],[0.507,0.465],[0.468,0.487],[0.438,0.472],[0.412,0.429],[0.386,0.367],[0.353,0.311],[0.295,0.227],[0.223,0.21],[0.156,0.208],[0.119,0.223],[0.106,0.252],[0.118,0.295],[0.136,0.361],[0.142,0.44],[0.123,0.495],[0.077,0.534],[0.016,0.558]]},"method":"X-ray","resolution":1.77,"rna_type":"Enzyme cofactor riboswitch","rna_group":"Riboswitch","num_chains":1,"total_rna_len":89,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["junction","hairpin loop","bulge","stem"],"rmsd":3.55,"host_chain_rmsd":3.55,"pocket_rmsd":4.67,"lig_bsa":236.3,"ligand_burial":0.807,"tm_score":0.641,"rg_apo":23.35,"rg_holo":22.9,"rg_delta":-0.45,"bp_rewire_src":"dssr","bp_formed":2,"bp_broken":1,"bp_conserved":41,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":30,"maxd":8.3,"water":1,"hbonds":3,"mw":150.1,"logp":-0.48,"thumb_img":true,"thumb_v":1785389622,"apo_alts":[],"n_apo_copies":0},{"id":"4LW0_ADE_A_B_101_pocket","title":"4LW0 (ADE) vs 7KD1 (apo)","struct_title":"Structure of the THF riboswitch bound to adenine","holo_pdb":"4LW0","ligand":"ADE","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"101","apo_pdb":"7KD1","apo_chain":"A","holo_len":89,"apo_len":89,"pocket_size":15,"thumb":{"holo":[[0.009,0.366],[0.07,0.414],[0.129,0.436],[0.179,0.434],[0.223,0.422],[0.261,0.375],[0.322,0.301],[0.38,0.266],[0.422,0.291],[0.452,0.325],[0.49,0.378],[0.527,0.435],[0.557,0.487],[0.588,0.506],[0.62,0.49],[0.651,0.449],[0.68,0.388],[0.704,0.322],[0.746,0.285],[0.801,0.287],[0.858,0.219],[0.771,0.212],[0.72,0.216],[0.669,0.239],[0.637,0.237],[0.617,0.196],[0.602,0.124],[0.576,0.055],[0.543,0.007],[0.51,0.0],[0.476,0.019],[0.444,0.067],[0.42,0.135],[0.39,0.195],[0.35,0.229],[0.272,0.318],[0.21,0.322],[0.186,0.246],[0.191,0.18],[0.227,0.146],[0.281,0.145],[0.33,0.148],[0.378,0.135],[0.391,0.212],[0.432,0.219],[0.47,0.194],[0.507,0.147],[0.542,0.091],[0.576,0.031],[0.61,0.005],[0.642,0.015],[0.674,0.047],[0.702,0.103],[0.733,0.163],[0.772,0.234],[0.823,0.31],[0.858,0.332],[0.894,0.388],[0.924,0.447],[0.997,0.485],[0.938,0.502],[0.875,0.535],[0.849,0.49],[0.83,0.463],[0.804,0.41],[0.775,0.348],[0.713,0.304],[0.629,0.276],[0.665,0.303],[0.621,0.32],[0.581,0.364],[0.548,0.424],[0.516,0.475],[0.485,0.501],[0.457,0.497],[0.425,0.458],[0.391,0.397],[0.355,0.349],[0.287,0.27],[0.255,0.21],[0.187,0.179],[0.145,0.202],[0.121,0.243],[0.13,0.306],[0.143,0.376],[0.136,0.441],[0.107,0.48],[0.058,0.485],[0.0,0.462]],"apo":[[0.035,0.445],[0.094,0.482],[0.15,0.485],[0.191,0.456],[0.222,0.418],[0.249,0.357],[0.327,0.291],[0.374,0.245],[0.417,0.263],[0.448,0.299],[0.478,0.355],[0.507,0.417],[0.535,0.471],[0.57,0.497],[0.607,0.49],[0.645,0.454],[0.681,0.394],[0.711,0.331],[0.755,0.292],[0.805,0.3],[0.877,0.232],[0.787,0.222],[0.731,0.232],[0.677,0.247],[0.647,0.234],[0.635,0.181],[0.63,0.114],[0.617,0.051],[0.592,0.014],[0.551,0.009],[0.501,0.037],[0.453,0.079],[0.409,0.127],[0.377,0.165],[0.328,0.23],[0.27,0.304],[0.202,0.282],[0.163,0.22],[0.151,0.167],[0.172,0.128],[0.219,0.117],[0.3,0.116],[0.34,0.127],[0.357,0.16],[0.424,0.178],[0.459,0.194],[0.493,0.169],[0.534,0.129],[0.587,0.083],[0.637,0.049],[0.68,0.042],[0.724,0.05],[0.741,0.091],[0.754,0.16],[0.777,0.231],[0.826,0.311],[0.859,0.342],[0.898,0.402],[0.928,0.445],[1.0,0.474],[0.943,0.498],[0.885,0.527],[0.848,0.498],[0.822,0.471],[0.801,0.412],[0.774,0.347],[0.717,0.306],[0.633,0.275],[0.67,0.306],[0.627,0.32],[0.587,0.363],[0.547,0.417],[0.507,0.463],[0.468,0.485],[0.438,0.471],[0.412,0.428],[0.387,0.366],[0.353,0.309],[0.295,0.226],[0.223,0.208],[0.157,0.206],[0.12,0.222],[0.106,0.25],[0.119,0.294],[0.137,0.36],[0.142,0.438],[0.123,0.493],[0.077,0.532],[0.016,0.556]]},"method":"X-ray","resolution":1.889,"rna_type":"Enzyme cofactor riboswitch","rna_group":"Riboswitch","num_chains":1,"total_rna_len":89,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["junction","hairpin loop","bulge","stem"],"rmsd":3.54,"host_chain_rmsd":3.54,"pocket_rmsd":4.61,"lig_bsa":208.2,"ligand_burial":0.813,"tm_score":0.644,"rg_apo":23.35,"rg_holo":22.93,"rg_delta":-0.42,"bp_rewire_src":"dssr","bp_formed":2,"bp_broken":1,"bp_conserved":41,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":30,"maxd":8.4,"water":2,"hbonds":3,"mw":135.1,"logp":-0.06,"thumb_img":true,"thumb_v":1785389622,"apo_alts":[],"n_apo_copies":0},{"id":"4NYA_2QB_A_L_110_pocket","title":"4NYA (2QB) vs 8F4O (apo)","struct_title":"Crystal structure of the E. coli thiM riboswitch in complex with 5-(azidomethyl)-2-methylpyrimidin-4-amine","holo_pdb":"4NYA","ligand":"2QB","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"110","apo_pdb":"8F4O","apo_chain":"A","holo_len":80,"apo_len":72,"pocket_size":20,"thumb":{"holo":[[0.193,0.604],[0.137,0.53],[0.092,0.475],[0.074,0.44],[0.108,0.426],[0.171,0.438],[0.249,0.469],[0.339,0.496],[0.426,0.48],[0.512,0.451],[0.561,0.381],[0.659,0.425],[0.744,0.412],[0.817,0.355],[0.896,0.354],[0.872,0.249],[0.851,0.159],[0.827,0.093],[0.89,0.108],[0.99,0.119],[0.936,0.172],[0.854,0.174],[0.778,0.166],[0.723,0.156],[0.715,0.146],[0.731,0.161],[0.757,0.226],[0.768,0.311],[0.741,0.405],[0.675,0.467],[0.593,0.467],[0.48,0.457],[0.507,0.403],[0.599,0.369],[0.516,0.301],[0.461,0.278],[0.367,0.249],[0.417,0.306],[0.431,0.393],[0.413,0.472],[0.36,0.527],[0.28,0.561],[0.268,0.682],[0.344,0.691],[0.434,0.784],[0.442,0.64],[0.419,0.55],[0.463,0.553],[0.495,0.584],[0.543,0.648],[0.608,0.697],[0.681,0.636],[0.767,0.573],[0.73,0.695],[0.775,0.742],[0.809,0.733],[0.825,0.68],[0.83,0.598],[0.844,0.516],[0.885,0.416],[0.825,0.445],[0.75,0.478],[0.669,0.577],[0.728,0.536],[0.715,0.626],[0.697,0.698],[0.685,0.757],[0.633,0.757],[0.546,0.76],[0.471,0.848],[0.516,0.796],[0.471,0.753],[0.429,0.678],[0.382,0.621],[0.303,0.545],[0.187,0.572],[0.11,0.565],[0.042,0.555],[0.017,0.564],[0.021,0.584]],"apo":[[0.107,0.422],[0.097,0.401],[0.11,0.392],[0.15,0.42],[0.219,0.438],[0.315,0.466],[0.397,0.444],[0.479,0.406],[0.526,0.332],[0.65,0.316],[0.729,0.287],[0.765,0.222],[0.756,0.131],[0.741,0.056],[0.717,0.022],[0.77,0.0],[0.719,0.21],[0.661,0.1],[0.624,0.063],[0.603,0.066],[0.634,0.113],[0.672,0.183],[0.68,0.27],[0.649,0.35],[0.57,0.376],[0.46,0.399],[0.475,0.346],[0.558,0.292],[0.468,0.236],[0.405,0.23],[0.328,0.231],[0.374,0.263],[0.408,0.347],[0.4,0.429],[0.348,0.489],[0.274,0.529],[0.26,0.653],[0.401,0.501],[0.442,0.511],[0.479,0.54],[0.525,0.595],[0.582,0.655],[0.642,0.711],[0.71,0.719],[0.754,0.683],[0.863,0.74],[0.928,0.787],[0.95,0.834],[0.955,0.844],[1.0,0.79],[0.987,0.882],[0.938,0.816],[0.869,0.77],[0.729,0.809],[0.831,0.867],[0.862,0.9],[0.871,0.901],[0.831,0.864],[0.75,0.827],[0.672,0.836],[0.607,0.812],[0.51,0.753],[0.463,0.71],[0.415,0.635],[0.371,0.581],[0.284,0.512],[0.167,0.536],[0.101,0.514],[0.039,0.472],[0.0,0.472],[0.007,0.494],[0.01,0.543]]},"method":"X-ray","resolution":2.65,"rna_type":"Enzyme cofactor riboswitch","rna_group":"Riboswitch","num_chains":1,"total_rna_len":156,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":95,"pocket_motifs":["junction","internal loop","hairpin loop","bulge","stem"],"rmsd":10.48,"host_chain_rmsd":10.48,"pocket_rmsd":9.22,"lig_bsa":271.7,"ligand_burial":0.857,"tm_score":0.461,"rg_apo":23.38,"rg_holo":19.16,"rg_delta":-4.22,"bp_rewire_src":"dssr","bp_formed":12,"bp_broken":2,"bp_conserved":26,"bp_formed_wc":5,"bp_broken_wc":1,"bp_conserved_wc":18,"maxd":33.1,"water":0,"hbonds":2,"mw":164.2,"logp":1.18,"thumb_img":true,"thumb_v":1785451620,"apo_alts":[],"n_apo_copies":2},{"id":"4NYA_2QB_B_S_107_pocket","title":"4NYA (2QB) vs 8F4O (apo)","struct_title":"Crystal structure of the E. coli thiM riboswitch in complex with 5-(azidomethyl)-2-methylpyrimidin-4-amine","holo_pdb":"4NYA","ligand":"2QB","holo_chain":"B","holo_rna_chain":"B","lig_auth_chain":"B","nearest_rna_chain":"B","lig_resseq":"107","apo_pdb":"8F4O","apo_chain":"A","holo_len":80,"apo_len":72,"pocket_size":19,"thumb":{"holo":[[0.181,0.58],[0.125,0.515],[0.082,0.48],[0.067,0.464],[0.104,0.465],[0.171,0.488],[0.251,0.512],[0.334,0.53],[0.418,0.505],[0.494,0.465],[0.53,0.396],[0.63,0.418],[0.713,0.401],[0.771,0.336],[0.863,0.326],[0.824,0.227],[0.788,0.147],[0.744,0.087],[0.775,0.088],[0.863,0.097],[0.8,0.146],[0.72,0.153],[0.655,0.147],[0.618,0.149],[0.631,0.147],[0.678,0.162],[0.72,0.22],[0.739,0.308],[0.714,0.401],[0.649,0.461],[0.568,0.469],[0.463,0.47],[0.478,0.421],[0.565,0.381],[0.474,0.304],[0.418,0.308],[0.344,0.306],[0.38,0.339],[0.409,0.419],[0.402,0.499],[0.356,0.555],[0.284,0.596],[0.287,0.717],[0.353,0.718],[0.417,0.782],[0.404,0.665],[0.413,0.572],[0.457,0.576],[0.488,0.599],[0.54,0.66],[0.608,0.702],[0.667,0.634],[0.744,0.551],[0.719,0.677],[0.773,0.712],[0.811,0.703],[0.82,0.648],[0.826,0.573],[0.83,0.489],[0.855,0.388],[0.795,0.426],[0.727,0.465],[0.662,0.576],[0.707,0.52],[0.712,0.604],[0.709,0.688],[0.694,0.74],[0.649,0.753],[0.567,0.761],[0.516,0.871],[0.542,0.802],[0.493,0.767],[0.437,0.708],[0.389,0.649],[0.308,0.583],[0.188,0.598],[0.116,0.604],[0.048,0.587],[0.022,0.579],[0.021,0.583]],"apo":[[0.099,0.475],[0.086,0.457],[0.097,0.447],[0.139,0.471],[0.208,0.481],[0.303,0.497],[0.38,0.468],[0.456,0.423],[0.493,0.347],[0.611,0.318],[0.684,0.281],[0.713,0.214],[0.695,0.128],[0.673,0.056],[0.646,0.026],[0.695,0.0],[0.666,0.209],[0.599,0.109],[0.56,0.076],[0.541,0.081],[0.576,0.122],[0.619,0.186],[0.636,0.27],[0.615,0.35],[0.541,0.384],[0.437,0.417],[0.446,0.365],[0.52,0.304],[0.427,0.259],[0.366,0.26],[0.291,0.269],[0.34,0.295],[0.381,0.372],[0.382,0.452],[0.338,0.516],[0.271,0.563],[0.269,0.684],[0.39,0.522],[0.43,0.528],[0.469,0.552],[0.519,0.601],[0.58,0.653],[0.644,0.701],[0.711,0.701],[0.75,0.662],[0.861,0.705],[0.929,0.744],[0.955,0.787],[0.962,0.795],[1.0,0.739],[0.997,0.829],[0.943,0.77],[0.871,0.733],[0.74,0.785],[0.844,0.831],[0.877,0.86],[0.886,0.86],[0.843,0.829],[0.761,0.801],[0.686,0.818],[0.621,0.802],[0.521,0.755],[0.471,0.719],[0.416,0.651],[0.369,0.604],[0.277,0.546],[0.168,0.581],[0.102,0.566],[0.038,0.532],[0.0,0.535],[0.009,0.556],[0.018,0.603]]},"method":"X-ray","resolution":2.65,"rna_type":"Enzyme cofactor riboswitch","rna_group":"Riboswitch","num_chains":1,"total_rna_len":156,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":95,"pocket_motifs":["junction","internal loop","hairpin loop","bulge","stem"],"rmsd":10.52,"host_chain_rmsd":10.52,"pocket_rmsd":9.27,"lig_bsa":273.6,"ligand_burial":0.887,"tm_score":0.47,"rg_apo":23.38,"rg_holo":19.11,"rg_delta":-4.27,"bp_rewire_src":"dssr","bp_formed":13,"bp_broken":4,"bp_conserved":24,"bp_formed_wc":5,"bp_broken_wc":2,"bp_conserved_wc":17,"maxd":33.5,"water":0,"hbonds":3,"mw":164.2,"logp":1.18,"thumb_img":true,"thumb_v":1785451621,"apo_alts":[],"n_apo_copies":2},{"id":"4NYB_2QC_A_B_101_pocket","title":"4NYB (2QC) vs 8F4O (apo)","struct_title":"Crystal structure of the E. coli thiM riboswitch in complex with (4-(1,2,3-thiadiazol-4-yl)phenyl)methanamine","holo_pdb":"4NYB","ligand":"2QC","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"101","apo_pdb":"8F4O","apo_chain":"A","holo_len":79,"apo_len":72,"pocket_size":20,"thumb":{"holo":[[0.211,0.107],[0.214,0.183],[0.203,0.26],[0.182,0.31],[0.163,0.342],[0.176,0.348],[0.223,0.337],[0.289,0.313],[0.377,0.295],[0.445,0.325],[0.519,0.361],[0.553,0.433],[0.651,0.413],[0.722,0.436],[0.763,0.498],[0.775,0.576],[0.838,0.569],[0.921,0.673],[0.859,0.647],[0.761,0.644],[0.704,0.627],[0.651,0.68],[0.651,0.667],[0.687,0.609],[0.72,0.532],[0.708,0.445],[0.66,0.378],[0.582,0.368],[0.484,0.353],[0.501,0.405],[0.582,0.449],[0.485,0.514],[0.448,0.507],[0.315,0.548],[0.41,0.475],[0.434,0.402],[0.43,0.327],[0.396,0.27],[0.33,0.234],[0.345,0.125],[0.406,0.129],[0.45,0.078],[0.534,0.18],[0.447,0.263],[0.493,0.265],[0.531,0.244],[0.583,0.195],[0.651,0.158],[0.704,0.225],[0.772,0.29],[0.757,0.176],[0.795,0.146],[0.822,0.157],[0.824,0.209],[0.816,0.278],[0.821,0.36],[0.842,0.458],[0.795,0.424],[0.741,0.385],[0.686,0.274],[0.716,0.325],[0.72,0.241],[0.72,0.169],[0.716,0.117],[0.679,0.108],[0.594,0.092],[0.542,0.0],[0.583,0.062],[0.539,0.089],[0.485,0.15],[0.434,0.194],[0.342,0.247],[0.242,0.22],[0.169,0.237],[0.107,0.259],[0.087,0.264],[0.091,0.256],[0.109,0.221],[0.0,0.245]],"apo":[[0.146,0.347],[0.136,0.362],[0.15,0.369],[0.192,0.347],[0.258,0.34],[0.348,0.328],[0.419,0.359],[0.487,0.405],[0.519,0.478],[0.628,0.51],[0.694,0.548],[0.716,0.613],[0.695,0.694],[0.672,0.76],[0.648,0.785],[0.696,0.81],[0.68,0.611],[0.613,0.703],[0.572,0.734],[0.551,0.731],[0.583,0.695],[0.625,0.637],[0.644,0.56],[0.627,0.484],[0.56,0.449],[0.462,0.414],[0.471,0.461],[0.541,0.52],[0.454,0.557],[0.394,0.555],[0.326,0.543],[0.37,0.523],[0.41,0.452],[0.415,0.377],[0.378,0.314],[0.318,0.267],[0.322,0.153],[0.428,0.311],[0.468,0.304],[0.508,0.282],[0.558,0.237],[0.618,0.19],[0.679,0.149],[0.739,0.153],[0.772,0.193],[0.878,0.156],[0.942,0.123],[0.966,0.086],[0.97,0.08],[1.0,0.137],[0.997,0.055],[0.948,0.105],[0.88,0.137],[0.759,0.083],[0.859,0.043],[0.894,0.015],[0.906,0.013],[0.867,0.04],[0.789,0.062],[0.723,0.04],[0.658,0.055],[0.564,0.094],[0.518,0.125],[0.464,0.186],[0.416,0.23],[0.326,0.281],[0.223,0.245],[0.16,0.257],[0.097,0.288],[0.058,0.285],[0.065,0.268],[0.072,0.226]]},"method":"X-ray","resolution":3.1,"rna_type":"Enzyme cofactor riboswitch","rna_group":"Riboswitch","num_chains":1,"total_rna_len":79,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["junction","internal loop","hairpin loop","bulge","stem"],"rmsd":10.38,"host_chain_rmsd":10.38,"pocket_rmsd":11.09,"lig_bsa":291.5,"ligand_burial":0.872,"tm_score":0.501,"rg_apo":23.66,"rg_holo":19.39,"rg_delta":-4.27,"bp_rewire_src":"dssr","bp_formed":12,"bp_broken":2,"bp_conserved":26,"bp_formed_wc":4,"bp_broken_wc":2,"bp_conserved_wc":17,"maxd":32.7,"water":0,"hbonds":3,"mw":191.3,"logp":1.66,"thumb_img":true,"thumb_v":1785444669,"apo_alts":[],"n_apo_copies":2},{"id":"4NYC_SVN_A_B_101_pocket","title":"4NYC (SVN) vs 8F4O (apo)","struct_title":"Crystal structure of the E. coli thiM riboswitch in complex with thieno[2,3-b]pyrazin-7-amine","holo_pdb":"4NYC","ligand":"SVN","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"101","apo_pdb":"8F4O","apo_chain":"A","holo_len":79,"apo_len":72,"pocket_size":19,"thumb":{"holo":[[0.217,0.094],[0.221,0.171],[0.201,0.248],[0.175,0.303],[0.158,0.337],[0.167,0.344],[0.214,0.334],[0.281,0.313],[0.371,0.291],[0.44,0.321],[0.517,0.358],[0.545,0.433],[0.644,0.412],[0.722,0.431],[0.765,0.498],[0.783,0.578],[0.848,0.572],[0.917,0.653],[0.854,0.628],[0.755,0.632],[0.7,0.623],[0.638,0.677],[0.651,0.663],[0.688,0.604],[0.722,0.527],[0.708,0.441],[0.66,0.374],[0.582,0.365],[0.481,0.349],[0.498,0.4],[0.576,0.445],[0.487,0.522],[0.45,0.51],[0.313,0.571],[0.406,0.471],[0.432,0.398],[0.43,0.322],[0.393,0.266],[0.323,0.227],[0.321,0.1],[0.409,0.115],[0.49,0.066],[0.531,0.178],[0.446,0.261],[0.49,0.262],[0.525,0.236],[0.58,0.188],[0.648,0.153],[0.698,0.218],[0.768,0.282],[0.751,0.169],[0.795,0.136],[0.822,0.148],[0.824,0.201],[0.816,0.273],[0.822,0.355],[0.845,0.453],[0.795,0.421],[0.739,0.378],[0.673,0.271],[0.713,0.322],[0.719,0.235],[0.72,0.159],[0.714,0.112],[0.675,0.097],[0.589,0.083],[0.525,0.0],[0.581,0.055],[0.531,0.083],[0.478,0.137],[0.432,0.182],[0.336,0.24],[0.235,0.219],[0.16,0.226],[0.105,0.249],[0.085,0.254],[0.09,0.241],[0.113,0.206],[0.0,0.231]],"apo":[[0.141,0.342],[0.131,0.358],[0.144,0.365],[0.186,0.343],[0.252,0.335],[0.343,0.323],[0.414,0.354],[0.483,0.4],[0.515,0.473],[0.626,0.506],[0.692,0.544],[0.715,0.609],[0.694,0.691],[0.671,0.757],[0.646,0.782],[0.694,0.807],[0.677,0.608],[0.61,0.7],[0.569,0.731],[0.548,0.728],[0.581,0.692],[0.623,0.634],[0.642,0.556],[0.625,0.479],[0.557,0.444],[0.459,0.409],[0.468,0.457],[0.538,0.516],[0.45,0.553],[0.39,0.552],[0.321,0.54],[0.366,0.519],[0.407,0.448],[0.411,0.372],[0.373,0.309],[0.313,0.262],[0.316,0.147],[0.424,0.305],[0.464,0.299],[0.504,0.276],[0.554,0.231],[0.614,0.184],[0.675,0.142],[0.736,0.146],[0.769,0.186],[0.877,0.149],[0.941,0.116],[0.965,0.078],[0.969,0.072],[1.0,0.129],[0.997,0.046],[0.948,0.097],[0.879,0.129],[0.757,0.075],[0.858,0.035],[0.893,0.007],[0.904,0.005],[0.864,0.032],[0.786,0.054],[0.719,0.033],[0.654,0.048],[0.56,0.087],[0.513,0.119],[0.459,0.18],[0.411,0.224],[0.321,0.277],[0.217,0.24],[0.153,0.252],[0.09,0.283],[0.052,0.281],[0.059,0.263],[0.066,0.221]]},"method":"X-ray","resolution":3.15,"rna_type":"Enzyme cofactor riboswitch","rna_group":"Riboswitch","num_chains":1,"total_rna_len":79,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["junction","internal loop","hairpin loop","bulge","stem"],"rmsd":10.42,"host_chain_rmsd":10.42,"pocket_rmsd":9.35,"lig_bsa":238.4,"ligand_burial":0.851,"tm_score":0.49,"rg_apo":23.66,"rg_holo":19.47,"rg_delta":-4.19,"bp_rewire_src":"dssr","bp_formed":13,"bp_broken":3,"bp_conserved":25,"bp_formed_wc":4,"bp_broken_wc":2,"bp_conserved_wc":17,"maxd":32.7,"water":0,"hbonds":2,"mw":151.2,"logp":1.27,"thumb_img":true,"thumb_v":1785444670,"apo_alts":[],"n_apo_copies":2},{"id":"4NYD_HPA_A_B_101_pocket","title":"4NYD (HPA) vs 8F4O (apo)","struct_title":"Crystal structure of the E. coli thiM riboswitch in complex with hypoxanthine","holo_pdb":"4NYD","ligand":"HPA","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"101","apo_pdb":"8F4O","apo_chain":"A","holo_len":79,"apo_len":72,"pocket_size":19,"thumb":{"holo":[[0.213,0.716],[0.217,0.64],[0.199,0.564],[0.173,0.506],[0.152,0.471],[0.162,0.465],[0.207,0.476],[0.277,0.502],[0.365,0.52],[0.436,0.492],[0.512,0.455],[0.539,0.378],[0.643,0.402],[0.717,0.378],[0.763,0.318],[0.776,0.235],[0.835,0.248],[0.919,0.149],[0.856,0.168],[0.758,0.169],[0.698,0.188],[0.643,0.134],[0.65,0.147],[0.684,0.205],[0.718,0.282],[0.705,0.369],[0.657,0.439],[0.576,0.446],[0.476,0.461],[0.492,0.408],[0.572,0.364],[0.475,0.286],[0.441,0.302],[0.325,0.27],[0.406,0.341],[0.428,0.415],[0.422,0.487],[0.385,0.545],[0.318,0.585],[0.331,0.701],[0.393,0.686],[0.482,0.756],[0.467,0.638],[0.44,0.551],[0.483,0.554],[0.521,0.578],[0.572,0.624],[0.642,0.664],[0.694,0.595],[0.766,0.531],[0.749,0.645],[0.786,0.676],[0.818,0.666],[0.818,0.613],[0.814,0.541],[0.819,0.456],[0.845,0.362],[0.793,0.391],[0.735,0.435],[0.661,0.528],[0.714,0.498],[0.717,0.578],[0.716,0.655],[0.712,0.703],[0.67,0.714],[0.581,0.729],[0.519,0.818],[0.572,0.758],[0.528,0.729],[0.477,0.67],[0.423,0.625],[0.334,0.572],[0.224,0.604],[0.154,0.583],[0.095,0.562],[0.079,0.558],[0.086,0.566],[0.107,0.602],[0.0,0.576]],"apo":[[0.133,0.469],[0.122,0.453],[0.136,0.446],[0.178,0.468],[0.245,0.476],[0.337,0.488],[0.409,0.457],[0.479,0.411],[0.511,0.337],[0.623,0.305],[0.69,0.266],[0.713,0.2],[0.692,0.118],[0.669,0.051],[0.644,0.025],[0.693,0.0],[0.675,0.202],[0.607,0.108],[0.566,0.076],[0.545,0.08],[0.578,0.117],[0.62,0.175],[0.639,0.254],[0.622,0.332],[0.553,0.367],[0.454,0.402],[0.463,0.353],[0.534,0.294],[0.446,0.256],[0.385,0.257],[0.315,0.269],[0.36,0.29],[0.401,0.362],[0.406,0.439],[0.367,0.502],[0.306,0.55],[0.309,0.666],[0.418,0.506],[0.459,0.513],[0.499,0.536],[0.55,0.582],[0.61,0.629],[0.672,0.672],[0.733,0.668],[0.767,0.628],[0.875,0.666],[0.94,0.7],[0.964,0.737],[0.969,0.744],[1.0,0.686],[0.997,0.77],[0.947,0.719],[0.878,0.686],[0.754,0.74],[0.856,0.781],[0.891,0.809],[0.903,0.811],[0.863,0.784],[0.783,0.761],[0.716,0.782],[0.651,0.767],[0.555,0.727],[0.508,0.695],[0.454,0.633],[0.405,0.588],[0.314,0.535],[0.209,0.572],[0.145,0.56],[0.081,0.528],[0.042,0.53],[0.049,0.548],[0.057,0.591]]},"method":"X-ray","resolution":2.9,"rna_type":"Enzyme cofactor riboswitch","rna_group":"Riboswitch","num_chains":1,"total_rna_len":79,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["junction","internal loop","hairpin loop","bulge","stem"],"rmsd":10.42,"host_chain_rmsd":10.42,"pocket_rmsd":9.35,"lig_bsa":228.7,"ligand_burial":0.888,"tm_score":0.493,"rg_apo":23.66,"rg_holo":19.32,"rg_delta":-4.34,"bp_rewire_src":"dssr","bp_formed":11,"bp_broken":2,"bp_conserved":26,"bp_formed_wc":4,"bp_broken_wc":2,"bp_conserved_wc":17,"maxd":32.4,"water":0,"hbonds":2,"mw":136.1,"logp":-0.35,"thumb_img":true,"thumb_v":1785444671,"apo_alts":[],"n_apo_copies":2},{"id":"4NYG_VIB_A_B_101_pocket","title":"4NYG (VIB) vs 8F4O (apo)","struct_title":"Crystal structure of the E. coli thiM riboswitch in complex with thiamine","holo_pdb":"4NYG","ligand":"VIB","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"101","apo_pdb":"8F4O","apo_chain":"A","holo_len":77,"apo_len":72,"pocket_size":23,"thumb":{"holo":[[0.22,0.703],[0.223,0.633],[0.207,0.55],[0.182,0.486],[0.166,0.443],[0.18,0.434],[0.226,0.445],[0.292,0.468],[0.377,0.497],[0.451,0.475],[0.521,0.446],[0.555,0.372],[0.652,0.398],[0.728,0.375],[0.765,0.311],[0.758,0.223],[0.871,0.181],[0.92,0.14],[0.84,0.138],[0.74,0.166],[0.7,0.18],[0.656,0.122],[0.654,0.146],[0.688,0.202],[0.722,0.278],[0.718,0.371],[0.667,0.437],[0.591,0.452],[0.496,0.463],[0.509,0.401],[0.593,0.356],[0.511,0.29],[0.465,0.299],[0.418,0.328],[0.444,0.405],[0.433,0.48],[0.39,0.529],[0.325,0.564],[0.324,0.669],[0.384,0.669],[0.471,0.739],[0.506,0.661],[0.445,0.538],[0.487,0.54],[0.524,0.556],[0.574,0.613],[0.64,0.654],[0.684,0.599],[0.777,0.581],[0.754,0.682],[0.859,0.669],[0.842,0.602],[0.829,0.535],[0.827,0.451],[0.85,0.356],[0.81,0.386],[0.742,0.427],[0.671,0.515],[0.733,0.492],[0.726,0.578],[0.721,0.677],[0.705,0.715],[0.666,0.724],[0.602,0.702],[0.525,0.814],[0.557,0.748],[0.513,0.709],[0.47,0.653],[0.422,0.606],[0.341,0.542],[0.235,0.557],[0.171,0.549],[0.115,0.526],[0.09,0.529],[0.095,0.552],[0.113,0.601],[0.0,0.585]],"apo":[[0.15,0.448],[0.139,0.432],[0.152,0.425],[0.193,0.448],[0.259,0.458],[0.349,0.472],[0.421,0.444],[0.491,0.4],[0.525,0.328],[0.636,0.299],[0.703,0.262],[0.728,0.198],[0.71,0.116],[0.689,0.05],[0.664,0.024],[0.712,0.0],[0.689,0.198],[0.625,0.104],[0.586,0.072],[0.565,0.075],[0.597,0.112],[0.638,0.171],[0.655,0.249],[0.636,0.325],[0.567,0.358],[0.468,0.39],[0.478,0.343],[0.549,0.286],[0.462,0.246],[0.403,0.246],[0.334,0.256],[0.378,0.278],[0.417,0.35],[0.419,0.426],[0.379,0.487],[0.317,0.533],[0.318,0.647],[0.429,0.492],[0.469,0.5],[0.507,0.523],[0.556,0.57],[0.614,0.618],[0.674,0.662],[0.735,0.66],[0.77,0.621],[0.876,0.661],[0.939,0.696],[0.962,0.734],[0.967,0.74],[1.0,0.685],[0.996,0.767],[0.947,0.715],[0.879,0.681],[0.756,0.731],[0.855,0.774],[0.889,0.803],[0.9,0.805],[0.86,0.777],[0.783,0.753],[0.715,0.772],[0.651,0.755],[0.558,0.714],[0.512,0.681],[0.46,0.618],[0.414,0.573],[0.326,0.518],[0.221,0.551],[0.159,0.538],[0.097,0.505],[0.059,0.507],[0.066,0.524],[0.072,0.567]]},"method":"X-ray","resolution":3.05,"rna_type":"Enzyme cofactor riboswitch","rna_group":"Riboswitch","num_chains":1,"total_rna_len":78,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["junction","bulge","stem","single strand"],"rmsd":10.37,"host_chain_rmsd":10.37,"pocket_rmsd":9.7,"lig_bsa":309.3,"ligand_burial":0.684,"tm_score":0.506,"rg_apo":23.66,"rg_holo":19.52,"rg_delta":-4.14,"bp_rewire_src":"dssr","bp_formed":7,"bp_broken":6,"bp_conserved":22,"bp_formed_wc":3,"bp_broken_wc":4,"bp_conserved_wc":14,"maxd":33.1,"water":0,"hbonds":1,"mw":265.4,"logp":0.61,"thumb_img":true,"thumb_v":1785444672,"apo_alts":[],"n_apo_copies":2},{"id":"4P20_AKN_A_C_101_pocket","title":"4P20 (AKN) vs 3BNL (apo)","struct_title":"Crystal structures of the bacterial ribosomal decoding site complexed with amikacin","holo_pdb":"4P20","ligand":"AKN","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"101","apo_pdb":"3BNL","apo_chain":"A","holo_len":21,"apo_len":22,"pocket_size":17,"thumb":{"holo":[[0.045,0.243],[0.107,0.175],[0.181,0.135],[0.257,0.146],[0.307,0.212],[0.352,0.289],[0.396,0.369],[0.452,0.413],[0.493,0.397],[0.522,0.359],[0.56,0.288],[0.601,0.203],[0.641,0.128],[0.688,0.086],[0.809,0.0],[0.855,0.04],[0.825,0.169],[0.85,0.269],[0.892,0.357],[0.937,0.394],[0.989,0.388]],"apo":[[0.0,0.363],[0.05,0.292],[0.11,0.22],[0.171,0.162],[0.234,0.154],[0.299,0.177],[0.355,0.24],[0.398,0.313],[0.435,0.36],[0.476,0.379],[0.508,0.345],[0.554,0.275],[0.603,0.198],[0.66,0.14],[0.726,0.112],[0.803,0.054],[0.842,0.091],[0.843,0.182],[0.852,0.29],[0.894,0.35],[0.946,0.373],[1.0,0.351]]},"method":"X-ray","resolution":2.7,"rna_type":"Ribosomal RNA","rna_group":"Protein synthesis","num_chains":2,"total_rna_len":42,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":96,"pocket_motifs":["internal loop","stem"],"rmsd":2.74,"host_chain_rmsd":2.23,"pocket_rmsd":2.58,"lig_bsa":516.2,"ligand_burial":0.661,"tm_score":0.255,"rg_apo":17.97,"rg_holo":18.23,"rg_delta":0.26,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":2,"bp_conserved":18,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":16,"maxd":6.5,"water":0,"hbonds":9,"mw":585.6,"logp":-8.42,"thumb_img":true,"thumb_v":1785389622,"apo_alts":[],"n_apo_copies":0},{"id":"4P20_AKN_B_D_101_pocket","title":"4P20 (AKN) vs 3BNL (apo)","struct_title":"Crystal structures of the bacterial ribosomal decoding site complexed with amikacin","holo_pdb":"4P20","ligand":"AKN","holo_chain":"B","holo_rna_chain":"B","lig_auth_chain":"B","nearest_rna_chain":"B","lig_resseq":"101","apo_pdb":"3BNL","apo_chain":"A","holo_len":21,"apo_len":22,"pocket_size":17,"thumb":{"holo":[[0.043,0.259],[0.109,0.184],[0.183,0.134],[0.256,0.142],[0.314,0.194],[0.354,0.275],[0.401,0.355],[0.449,0.416],[0.486,0.418],[0.517,0.388],[0.558,0.317],[0.592,0.235],[0.626,0.144],[0.684,0.097],[0.808,0.0],[0.867,0.033],[0.834,0.159],[0.859,0.257],[0.895,0.347],[0.94,0.396],[0.99,0.411]],"apo":[[0.0,0.365],[0.05,0.301],[0.109,0.231],[0.171,0.169],[0.235,0.153],[0.3,0.17],[0.356,0.228],[0.398,0.304],[0.436,0.358],[0.476,0.386],[0.507,0.362],[0.553,0.298],[0.603,0.221],[0.66,0.159],[0.727,0.123],[0.803,0.06],[0.843,0.088],[0.844,0.174],[0.853,0.282],[0.895,0.347],[0.946,0.379],[1.0,0.366]]},"method":"X-ray","resolution":2.7,"rna_type":"Ribosomal RNA","rna_group":"Protein synthesis","num_chains":2,"total_rna_len":42,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":96,"pocket_motifs":["internal loop","stem"],"rmsd":2.72,"host_chain_rmsd":2.4,"pocket_rmsd":2.85,"lig_bsa":518.5,"ligand_burial":0.662,"tm_score":0.251,"rg_apo":17.97,"rg_holo":18.31,"rg_delta":0.34,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":2,"bp_conserved":18,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":16,"maxd":5.8,"water":2,"hbonds":9,"mw":585.6,"logp":-8.42,"thumb_img":true,"thumb_v":1785389622,"apo_alts":[],"n_apo_copies":0},{"id":"4P3S_GET_A_C_101_pocket","title":"4P3S (GET) vs 7EDN (apo)","struct_title":"Crystal structure of the bacterial A1408C-mutant ribosomal decoding site in complex with geneticin","holo_pdb":"4P3S","ligand":"GET","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"B","lig_resseq":"101","apo_pdb":"7EDN","apo_chain":"A","holo_len":21,"apo_len":22,"pocket_size":16,"thumb":{"holo":[[0.0,0.262],[0.071,0.193],[0.145,0.152],[0.223,0.136],[0.286,0.187],[0.337,0.268],[0.386,0.352],[0.435,0.41],[0.482,0.434],[0.519,0.392],[0.547,0.323],[0.577,0.235],[0.61,0.157],[0.655,0.091],[0.783,0.0],[0.846,0.032],[0.825,0.148],[0.848,0.251],[0.885,0.337],[0.923,0.403],[0.976,0.414]],"apo":[[0.01,0.41],[0.041,0.309],[0.077,0.221],[0.134,0.162],[0.201,0.133],[0.276,0.149],[0.344,0.209],[0.379,0.299],[0.415,0.368],[0.453,0.391],[0.497,0.377],[0.534,0.31],[0.582,0.232],[0.634,0.164],[0.695,0.121],[0.764,0.113],[0.86,0.044],[0.798,0.172],[0.838,0.274],[0.893,0.344],[0.951,0.372],[1.0,0.352]]},"method":"X-ray","resolution":2.3,"rna_type":"Ribosomal RNA","rna_group":"Protein synthesis","num_chains":2,"total_rna_len":41,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":96,"global_identity":96,"pocket_motifs":["internal loop","stem"],"rmsd":2.95,"host_chain_rmsd":2.66,"pocket_rmsd":2.91,"lig_bsa":468.8,"ligand_burial":0.708,"tm_score":0.235,"rg_apo":18.06,"rg_holo":18.47,"rg_delta":0.41,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":2,"bp_conserved":18,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":16,"maxd":7.3,"water":5,"hbonds":8,"mw":496.6,"logp":-5.61,"thumb_img":true,"thumb_v":1785488732,"apo_alts":[{"pdb":"4P43","rmsd":2.51,"host_chain_rmsd":2.51,"apo_chain":"A","apo_len":21,"identity":96,"global_identity":96,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.336,"rg_delta":0.53,"pocket_rmsd":3.2,"maxd":8.9,"bp_formed":0,"bp_broken":2,"bp_conserved":18}],"n_apo_copies":0},{"id":"4P3S_GET_A_D_102_pocket","title":"4P3S (GET) vs 7EDN (apo)","struct_title":"Crystal structure of the bacterial A1408C-mutant ribosomal decoding site in complex with geneticin","holo_pdb":"4P3S","ligand":"GET","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"102","apo_pdb":"7EDN","apo_chain":"A","holo_len":21,"apo_len":22,"pocket_size":16,"thumb":{"holo":[[0.0,0.262],[0.071,0.193],[0.145,0.152],[0.223,0.136],[0.286,0.187],[0.337,0.268],[0.386,0.352],[0.435,0.41],[0.482,0.434],[0.519,0.392],[0.547,0.323],[0.577,0.235],[0.61,0.157],[0.655,0.091],[0.783,0.0],[0.846,0.032],[0.825,0.148],[0.848,0.251],[0.885,0.337],[0.923,0.403],[0.976,0.414]],"apo":[[0.01,0.41],[0.041,0.309],[0.077,0.221],[0.134,0.162],[0.201,0.133],[0.276,0.149],[0.344,0.209],[0.379,0.299],[0.415,0.368],[0.453,0.391],[0.497,0.377],[0.534,0.31],[0.582,0.232],[0.634,0.164],[0.695,0.121],[0.764,0.113],[0.86,0.044],[0.798,0.172],[0.838,0.274],[0.893,0.344],[0.951,0.372],[1.0,0.352]]},"method":"X-ray","resolution":2.3,"rna_type":"Ribosomal RNA","rna_group":"Protein synthesis","num_chains":2,"total_rna_len":41,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":96,"global_identity":96,"pocket_motifs":["internal loop","stem"],"rmsd":2.95,"host_chain_rmsd":2.66,"pocket_rmsd":3.03,"lig_bsa":478.1,"ligand_burial":0.721,"tm_score":0.235,"rg_apo":18.06,"rg_holo":18.47,"rg_delta":0.41,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":2,"bp_conserved":18,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":16,"maxd":7.3,"water":5,"hbonds":8,"mw":496.6,"logp":-5.61,"thumb_img":true,"thumb_v":1785444673,"apo_alts":[{"pdb":"4P43","rmsd":2.51,"host_chain_rmsd":2.51,"apo_chain":"A","apo_len":21,"identity":96,"global_identity":96,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.336,"rg_delta":0.53,"pocket_rmsd":2.41,"maxd":8.0,"bp_formed":0,"bp_broken":2,"bp_conserved":18}],"n_apo_copies":0},{"id":"4P3S_GET_A_E_103_pocket","title":"4P3S (GET) vs 7EDN (apo)","struct_title":"Crystal structure of the bacterial A1408C-mutant ribosomal decoding site in complex with geneticin","holo_pdb":"4P3S","ligand":"GET","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"B","lig_resseq":"103","apo_pdb":"7EDN","apo_chain":"A","holo_len":21,"apo_len":22,"pocket_size":13,"thumb":{"holo":[[0.0,0.262],[0.071,0.193],[0.145,0.152],[0.223,0.136],[0.286,0.187],[0.337,0.268],[0.386,0.352],[0.435,0.41],[0.482,0.434],[0.519,0.392],[0.547,0.323],[0.577,0.235],[0.61,0.157],[0.655,0.091],[0.783,0.0],[0.846,0.032],[0.825,0.148],[0.848,0.251],[0.885,0.337],[0.923,0.403],[0.976,0.414]],"apo":[[0.01,0.41],[0.041,0.309],[0.077,0.221],[0.134,0.162],[0.201,0.133],[0.276,0.149],[0.344,0.209],[0.379,0.299],[0.415,0.368],[0.453,0.391],[0.497,0.377],[0.534,0.31],[0.582,0.232],[0.634,0.164],[0.695,0.121],[0.764,0.113],[0.86,0.044],[0.798,0.172],[0.838,0.274],[0.893,0.344],[0.951,0.372],[1.0,0.352]]},"method":"X-ray","resolution":2.3,"rna_type":"Ribosomal RNA","rna_group":"Protein synthesis","num_chains":2,"total_rna_len":41,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":96,"global_identity":96,"pocket_motifs":["internal loop","stem"],"rmsd":2.95,"host_chain_rmsd":2.66,"pocket_rmsd":2.5,"lig_bsa":326.0,"ligand_burial":0.494,"tm_score":0.235,"rg_apo":18.06,"rg_holo":18.47,"rg_delta":0.41,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":2,"bp_conserved":18,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":16,"maxd":7.3,"water":5,"hbonds":4,"mw":496.6,"logp":-5.61,"thumb_img":true,"thumb_v":1785488733,"apo_alts":[{"pdb":"4P43","rmsd":2.51,"host_chain_rmsd":2.51,"apo_chain":"A","apo_len":21,"identity":96,"global_identity":96,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.336,"rg_delta":0.53,"pocket_rmsd":2.12,"maxd":8.9,"bp_formed":0,"bp_broken":2,"bp_conserved":18}],"n_apo_copies":0},{"id":"4TZX_ADE_X_B_101_pocket","title":"4TZX (ADE) vs 5E54 (apo)","struct_title":"Vibrio Vulnificus Adenine Riboswitch variant, grown in Mg2+","holo_pdb":"4TZX","ligand":"ADE","holo_chain":"X","holo_rna_chain":"X","lig_auth_chain":"X","nearest_rna_chain":"X","lig_resseq":"101","apo_pdb":"5E54","apo_chain":"B","holo_len":71,"apo_len":68,"pocket_size":16,"thumb":{"holo":[[0.055,0.293],[0.106,0.37],[0.144,0.431],[0.169,0.453],[0.187,0.444],[0.197,0.39],[0.216,0.315],[0.257,0.236],[0.33,0.195],[0.421,0.222],[0.487,0.265],[0.478,0.286],[0.536,0.233],[0.591,0.172],[0.646,0.104],[0.7,0.057],[0.756,0.032],[0.798,0.066],[0.822,0.134],[0.856,0.215],[0.888,0.299],[0.925,0.359],[0.899,0.474],[0.892,0.484],[0.872,0.386],[0.812,0.345],[0.792,0.264],[0.757,0.193],[0.712,0.119],[0.682,0.041],[0.637,0.013],[0.59,0.023],[0.544,0.062],[0.479,0.115],[0.366,0.12],[0.265,0.049],[0.305,0.099],[0.309,0.094],[0.368,0.145],[0.431,0.198],[0.502,0.211],[0.536,0.292],[0.557,0.375],[0.587,0.453],[0.63,0.501],[0.679,0.513],[0.732,0.489],[0.798,0.446],[0.874,0.408],[0.979,0.476],[1.0,0.394],[0.982,0.331],[0.909,0.27],[0.848,0.283],[0.78,0.329],[0.715,0.379],[0.649,0.429],[0.584,0.474],[0.521,0.478],[0.467,0.443],[0.413,0.356],[0.377,0.285],[0.331,0.216],[0.272,0.173],[0.205,0.184],[0.145,0.233],[0.1,0.303],[0.076,0.382],[0.063,0.45],[0.05,0.481],[0.03,0.475]],"apo":[[0.0,0.306],[0.056,0.377],[0.109,0.442],[0.168,0.488],[0.219,0.5],[0.247,0.446],[0.266,0.369],[0.283,0.281],[0.309,0.208],[0.439,0.193],[0.465,0.271],[0.465,0.263],[0.517,0.206],[0.577,0.154],[0.645,0.098],[0.713,0.063],[0.778,0.046],[0.822,0.067],[0.843,0.135],[0.867,0.217],[0.884,0.303],[0.913,0.365],[0.882,0.475],[0.877,0.484],[0.86,0.383],[0.803,0.344],[0.797,0.258],[0.771,0.18],[0.734,0.107],[0.711,0.034],[0.671,0.0],[0.613,0.004],[0.547,0.042],[0.473,0.086],[0.396,0.102],[0.315,0.183],[0.385,0.174],[0.422,0.058],[0.476,0.063],[0.461,0.141],[0.507,0.183],[0.53,0.278],[0.554,0.36],[0.578,0.436],[0.61,0.49],[0.654,0.507],[0.713,0.483],[0.782,0.443],[0.858,0.41],[0.966,0.476],[0.989,0.396],[0.959,0.327],[0.899,0.266],[0.837,0.282],[0.767,0.328],[0.694,0.378],[0.621,0.42],[0.558,0.453],[0.503,0.455],[0.456,0.42],[0.397,0.335],[0.333,0.267],[0.27,0.225],[0.216,0.209],[0.171,0.239]]},"method":"X-ray","resolution":2.01,"rna_type":"Purine-compound riboswitch","rna_group":"Riboswitch","num_chains":1,"total_rna_len":71,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["junction","hairpin loop","stem"],"rmsd":4.34,"host_chain_rmsd":4.34,"pocket_rmsd":6.03,"lig_bsa":254.4,"ligand_burial":0.98,"tm_score":0.622,"rg_apo":19.33,"rg_holo":19.54,"rg_delta":0.21,"bp_rewire_src":"dssr","bp_formed":8,"bp_broken":6,"bp_conserved":28,"bp_formed_wc":4,"bp_broken_wc":2,"bp_conserved_wc":21,"maxd":11.2,"water":3,"hbonds":4,"mw":135.1,"logp":-0.06,"thumb_img":true,"thumb_v":1785389622,"apo_alts":[],"n_apo_copies":2},{"id":"4TZY_ADE_X_B_101_pocket","title":"4TZY (ADE) vs 5E54 (apo)","struct_title":"Vibrio vulnificus Adenine Riboswitch Variant, grown in both Sr2+ and Mg2+","holo_pdb":"4TZY","ligand":"ADE","holo_chain":"X","holo_rna_chain":"X","lig_auth_chain":"X","nearest_rna_chain":"X","lig_resseq":"101","apo_pdb":"5E54","apo_chain":"B","holo_len":71,"apo_len":68,"pocket_size":16,"thumb":{"holo":[[0.06,0.301],[0.11,0.377],[0.147,0.433],[0.171,0.456],[0.186,0.442],[0.198,0.389],[0.217,0.314],[0.258,0.233],[0.334,0.193],[0.421,0.225],[0.486,0.266],[0.478,0.287],[0.535,0.232],[0.592,0.174],[0.646,0.105],[0.7,0.061],[0.756,0.033],[0.798,0.066],[0.822,0.136],[0.855,0.217],[0.888,0.301],[0.926,0.36],[0.901,0.476],[0.896,0.487],[0.873,0.386],[0.814,0.346],[0.793,0.267],[0.757,0.194],[0.71,0.121],[0.679,0.045],[0.635,0.016],[0.591,0.023],[0.544,0.062],[0.48,0.117],[0.37,0.118],[0.268,0.047],[0.308,0.096],[0.314,0.093],[0.372,0.146],[0.434,0.2],[0.504,0.212],[0.537,0.295],[0.56,0.378],[0.59,0.455],[0.631,0.502],[0.681,0.514],[0.733,0.49],[0.8,0.447],[0.874,0.406],[0.982,0.473],[1.0,0.392],[0.982,0.327],[0.909,0.267],[0.846,0.28],[0.778,0.328],[0.716,0.38],[0.649,0.429],[0.584,0.476],[0.521,0.48],[0.469,0.444],[0.413,0.356],[0.377,0.286],[0.331,0.216],[0.274,0.172],[0.205,0.181],[0.146,0.231],[0.102,0.303],[0.077,0.381],[0.065,0.447],[0.052,0.482],[0.028,0.471]],"apo":[[0.0,0.308],[0.056,0.379],[0.11,0.445],[0.168,0.49],[0.219,0.502],[0.248,0.447],[0.266,0.37],[0.283,0.281],[0.31,0.208],[0.44,0.193],[0.466,0.271],[0.466,0.264],[0.517,0.207],[0.578,0.154],[0.646,0.098],[0.714,0.063],[0.779,0.046],[0.823,0.067],[0.845,0.135],[0.869,0.217],[0.886,0.303],[0.915,0.365],[0.884,0.475],[0.879,0.485],[0.862,0.384],[0.805,0.345],[0.798,0.258],[0.772,0.181],[0.735,0.108],[0.712,0.034],[0.671,0.0],[0.614,0.004],[0.548,0.042],[0.474,0.086],[0.397,0.102],[0.315,0.184],[0.385,0.175],[0.422,0.059],[0.476,0.064],[0.462,0.143],[0.508,0.184],[0.531,0.28],[0.555,0.361],[0.579,0.438],[0.612,0.491],[0.655,0.508],[0.715,0.483],[0.784,0.443],[0.86,0.41],[0.968,0.476],[0.991,0.396],[0.961,0.326],[0.9,0.266],[0.838,0.282],[0.769,0.328],[0.696,0.378],[0.623,0.42],[0.559,0.453],[0.505,0.456],[0.457,0.421],[0.397,0.337],[0.333,0.269],[0.271,0.227],[0.217,0.21],[0.171,0.24]]},"method":"X-ray","resolution":2.57,"rna_type":"Purine-compound riboswitch","rna_group":"Riboswitch","num_chains":1,"total_rna_len":71,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["junction","hairpin loop","stem"],"rmsd":4.38,"host_chain_rmsd":4.38,"pocket_rmsd":6.01,"lig_bsa":256.3,"ligand_burial":0.98,"tm_score":0.624,"rg_apo":19.33,"rg_holo":19.48,"rg_delta":0.15,"bp_rewire_src":"dssr","bp_formed":8,"bp_broken":5,"bp_conserved":29,"bp_formed_wc":4,"bp_broken_wc":2,"bp_conserved_wc":21,"maxd":11.1,"water":0,"hbonds":4,"mw":135.1,"logp":-0.06,"thumb_img":true,"thumb_v":1785389622,"apo_alts":[],"n_apo_copies":2},{"id":"4XNR_ADE_X_B_101_pocket","title":"4XNR (ADE) vs 5E54 (apo)","struct_title":"Vibrio Vulnificus Adenine Riboswitch Aptamer Domain, Synthesized by Position-selective Labeling of RNA (PLOR), in Complex with Adenine","holo_pdb":"4XNR","ligand":"ADE","holo_chain":"X","holo_rna_chain":"X","lig_auth_chain":"X","nearest_rna_chain":"X","lig_resseq":"101","apo_pdb":"5E54","apo_chain":"B","holo_len":71,"apo_len":68,"pocket_size":16,"thumb":{"holo":[[0.06,0.306],[0.111,0.382],[0.146,0.44],[0.171,0.461],[0.188,0.445],[0.201,0.389],[0.215,0.313],[0.258,0.233],[0.331,0.191],[0.421,0.22],[0.487,0.265],[0.479,0.285],[0.536,0.23],[0.592,0.171],[0.648,0.101],[0.702,0.057],[0.757,0.031],[0.799,0.067],[0.823,0.137],[0.858,0.219],[0.889,0.302],[0.926,0.364],[0.899,0.477],[0.891,0.49],[0.873,0.389],[0.814,0.348],[0.793,0.268],[0.756,0.197],[0.712,0.12],[0.681,0.042],[0.637,0.011],[0.59,0.021],[0.546,0.059],[0.481,0.114],[0.367,0.115],[0.269,0.042],[0.306,0.093],[0.31,0.089],[0.369,0.142],[0.431,0.197],[0.502,0.209],[0.538,0.292],[0.557,0.376],[0.587,0.454],[0.63,0.503],[0.679,0.515],[0.731,0.491],[0.797,0.446],[0.873,0.406],[0.977,0.476],[1.0,0.396],[0.98,0.33],[0.909,0.269],[0.848,0.28],[0.778,0.328],[0.714,0.378],[0.647,0.427],[0.582,0.473],[0.52,0.477],[0.467,0.44],[0.413,0.354],[0.377,0.281],[0.331,0.211],[0.269,0.167],[0.198,0.177],[0.143,0.231],[0.103,0.307],[0.078,0.388],[0.064,0.453],[0.051,0.487],[0.03,0.474]],"apo":[[0.0,0.306],[0.056,0.377],[0.109,0.443],[0.168,0.488],[0.218,0.5],[0.247,0.445],[0.266,0.368],[0.283,0.279],[0.309,0.207],[0.439,0.191],[0.465,0.269],[0.465,0.263],[0.517,0.206],[0.578,0.153],[0.646,0.097],[0.714,0.063],[0.779,0.046],[0.823,0.068],[0.844,0.136],[0.868,0.218],[0.885,0.304],[0.914,0.366],[0.882,0.475],[0.878,0.486],[0.861,0.384],[0.804,0.345],[0.797,0.259],[0.772,0.181],[0.735,0.108],[0.712,0.034],[0.671,0.0],[0.614,0.003],[0.548,0.041],[0.474,0.085],[0.397,0.101],[0.315,0.183],[0.385,0.174],[0.422,0.059],[0.477,0.064],[0.462,0.142],[0.508,0.183],[0.53,0.279],[0.554,0.361],[0.578,0.437],[0.61,0.49],[0.654,0.507],[0.713,0.483],[0.782,0.443],[0.858,0.41],[0.966,0.476],[0.989,0.397],[0.96,0.326],[0.899,0.266],[0.837,0.282],[0.767,0.328],[0.695,0.377],[0.622,0.419],[0.558,0.452],[0.503,0.455],[0.457,0.42],[0.397,0.335],[0.333,0.268],[0.27,0.225],[0.216,0.208],[0.171,0.238]]},"method":"X-ray","resolution":2.21,"rna_type":"Purine-compound riboswitch","rna_group":"Riboswitch","num_chains":1,"total_rna_len":71,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["junction","hairpin loop","stem"],"rmsd":4.36,"host_chain_rmsd":4.36,"pocket_rmsd":6.01,"lig_bsa":254.8,"ligand_burial":0.968,"tm_score":0.626,"rg_apo":19.33,"rg_holo":19.57,"rg_delta":0.24,"bp_rewire_src":"dssr","bp_formed":8,"bp_broken":6,"bp_conserved":28,"bp_formed_wc":4,"bp_broken_wc":2,"bp_conserved_wc":21,"maxd":11.1,"water":1,"hbonds":3,"mw":135.1,"logp":-0.06,"thumb_img":true,"thumb_v":1785389622,"apo_alts":[],"n_apo_copies":2},{"id":"5BJO_747_Y_K_104_pocket","title":"5BJO (747) vs 6E80 (apo)","struct_title":"Crystal structure of the Corn RNA aptamer in complex with DFHO, site-specific 5-iodo-U","holo_pdb":"5BJO","ligand":"747","holo_chain":"Y","holo_rna_chain":"Y","lig_auth_chain":"Y","nearest_rna_chain":"Y","lig_resseq":"104","apo_pdb":"6E80","apo_chain":"A","holo_len":36,"apo_len":35,"pocket_size":22,"thumb":{"holo":[[0.227,0.479],[0.206,0.484],[0.181,0.417],[0.17,0.289],[0.189,0.164],[0.251,0.075],[0.35,0.039],[0.483,0.055],[0.647,0.049],[0.728,0.096],[0.862,0.112],[0.703,0.159],[0.58,0.197],[0.52,0.27],[0.572,0.41],[0.601,0.465],[0.631,0.398],[0.592,0.284],[0.749,0.314],[0.693,0.4],[0.732,0.458],[0.807,0.516],[0.865,0.409],[1.0,0.403],[0.931,0.254],[0.846,0.145],[0.75,0.134],[0.694,0.148],[0.571,0.068],[0.437,0.086],[0.355,0.153],[0.212,0.088],[0.098,0.119],[0.027,0.212],[0.0,0.336],[0.016,0.461]],"apo":[[0.26,0.526],[0.207,0.435],[0.18,0.298],[0.187,0.168],[0.245,0.075],[0.353,0.039],[0.477,0.052],[0.644,0.042],[0.74,0.086],[0.892,0.0],[0.753,0.154],[0.614,0.163],[0.57,0.199],[0.553,0.365],[0.545,0.42],[0.576,0.37],[0.581,0.267],[0.733,0.285],[0.654,0.373],[0.644,0.444],[0.715,0.524],[0.794,0.438],[0.97,0.5],[0.923,0.313],[0.865,0.185],[0.755,0.136],[0.697,0.143],[0.578,0.059],[0.446,0.085],[0.364,0.142],[0.208,0.081],[0.104,0.127],[0.039,0.24],[0.049,0.387],[0.078,0.52]]},"method":"X-ray","resolution":2.35,"rna_type":"Fluorescing aptamer","rna_group":"Aptamer","num_chains":2,"total_rna_len":70,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["junction","hairpin loop"],"rmsd":4.33,"host_chain_rmsd":2.41,"pocket_rmsd":5.32,"lig_bsa":433.8,"ligand_burial":0.985,"tm_score":0.393,"rg_apo":13.73,"rg_holo":14.01,"rg_delta":0.28,"bp_rewire_src":"dssr","bp_formed":6,"bp_broken":5,"bp_conserved":35,"bp_formed_wc":2,"bp_broken_wc":0,"bp_conserved_wc":13,"maxd":9.2,"water":2,"hbonds":1,"mw":281.2,"logp":1.34,"thumb_img":true,"thumb_v":1785444675,"apo_alts":[],"n_apo_copies":0},{"id":"5BJP_747_Y_L_104_pocket","title":"5BJP (747) vs 6E80 (apo)","struct_title":"Crystal structure of the Corn RNA aptamer in complex with DFHO, iridium hexammine soak","holo_pdb":"5BJP","ligand":"747","holo_chain":"Y","holo_rna_chain":"Y","lig_auth_chain":"Y","nearest_rna_chain":"Y","lig_resseq":"104","apo_pdb":"6E80","apo_chain":"A","holo_len":36,"apo_len":35,"pocket_size":22,"thumb":{"holo":[[0.227,0.482],[0.211,0.483],[0.178,0.415],[0.169,0.29],[0.184,0.161],[0.249,0.078],[0.351,0.035],[0.479,0.057],[0.639,0.047],[0.727,0.098],[0.853,0.11],[0.693,0.159],[0.577,0.2],[0.513,0.275],[0.57,0.417],[0.599,0.469],[0.626,0.394],[0.59,0.282],[0.751,0.304],[0.691,0.396],[0.732,0.46],[0.808,0.517],[0.866,0.411],[1.0,0.398],[0.93,0.258],[0.841,0.144],[0.745,0.131],[0.692,0.145],[0.568,0.066],[0.437,0.081],[0.349,0.141],[0.207,0.083],[0.091,0.118],[0.021,0.212],[0.0,0.342],[0.012,0.46]],"apo":[[0.259,0.527],[0.205,0.438],[0.178,0.301],[0.185,0.17],[0.243,0.076],[0.351,0.038],[0.475,0.052],[0.642,0.041],[0.739,0.085],[0.89,0.0],[0.751,0.155],[0.612,0.164],[0.568,0.203],[0.552,0.368],[0.544,0.421],[0.576,0.369],[0.58,0.265],[0.733,0.28],[0.654,0.37],[0.644,0.442],[0.715,0.524],[0.795,0.436],[0.97,0.498],[0.923,0.311],[0.864,0.184],[0.754,0.135],[0.696,0.14],[0.576,0.057],[0.444,0.084],[0.362,0.14],[0.205,0.079],[0.101,0.127],[0.037,0.241],[0.048,0.389],[0.077,0.521]]},"method":"X-ray","resolution":2.51,"rna_type":"Fluorescing aptamer","rna_group":"Aptamer","num_chains":2,"total_rna_len":72,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["junction","hairpin loop"],"rmsd":4.35,"host_chain_rmsd":2.48,"pocket_rmsd":5.35,"lig_bsa":433.9,"ligand_burial":0.97,"tm_score":0.413,"rg_apo":13.56,"rg_holo":13.86,"rg_delta":0.3,"bp_rewire_src":"dssr","bp_formed":4,"bp_broken":5,"bp_conserved":35,"bp_formed_wc":2,"bp_broken_wc":0,"bp_conserved_wc":13,"maxd":9.2,"water":2,"hbonds":2,"mw":281.2,"logp":1.34,"thumb_img":true,"thumb_v":1785389622,"apo_alts":[],"n_apo_copies":0},{"id":"5FJC_SAM_A_B_101_pocket","title":"5FJC (SAM) vs 3IQP (apo)","struct_title":"SAM-I riboswitch bearing the H. marismortui Kt-7 variant C-2bU","holo_pdb":"5FJC","ligand":"SAM","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"101","apo_pdb":"3IQP","apo_chain":"A","holo_len":94,"apo_len":94,"pocket_size":24,"thumb":{"holo":[[0.427,0.212],[0.446,0.137],[0.437,0.069],[0.416,0.04],[0.406,0.054],[0.393,0.097],[0.408,0.17],[0.445,0.247],[0.509,0.306],[0.4,0.306],[0.327,0.345],[0.278,0.399],[0.231,0.505],[0.203,0.626],[0.127,0.556],[0.092,0.564],[0.113,0.565],[0.177,0.578],[0.232,0.632],[0.328,0.623],[0.367,0.573],[0.403,0.515],[0.455,0.465],[0.471,0.353],[0.544,0.369],[0.626,0.404],[0.671,0.462],[0.651,0.505],[0.598,0.535],[0.519,0.551],[0.434,0.564],[0.377,0.615],[0.315,0.717],[0.311,0.71],[0.275,0.654],[0.336,0.571],[0.304,0.504],[0.231,0.472],[0.149,0.459],[0.096,0.46],[0.095,0.458],[0.134,0.446],[0.193,0.407],[0.252,0.347],[0.263,0.273],[0.244,0.192],[0.282,0.155],[0.213,0.12],[0.127,0.092],[0.074,0.071],[0.046,0.01],[0.031,0.082],[0.0,0.153],[0.037,0.184],[0.071,0.191],[0.138,0.196],[0.211,0.231],[0.27,0.275],[0.298,0.335],[0.292,0.415],[0.407,0.51],[0.48,0.481],[0.524,0.356],[0.486,0.327],[0.531,0.447],[0.612,0.425],[0.653,0.386],[0.679,0.326],[0.716,0.228],[0.756,0.185],[0.789,0.166],[0.824,0.203],[0.863,0.275],[0.905,0.341],[1.0,0.382],[0.933,0.427],[0.865,0.463],[0.816,0.418],[0.781,0.358],[0.741,0.286],[0.706,0.216],[0.673,0.17],[0.647,0.17],[0.619,0.201],[0.563,0.25],[0.49,0.28],[0.415,0.282],[0.348,0.24],[0.301,0.168],[0.289,0.096],[0.299,0.047],[0.328,0.048],[0.367,0.057],[0.369,0.11]],"apo":[[0.388,0.175],[0.422,0.113],[0.434,0.047],[0.426,0.028],[0.419,0.051],[0.407,0.099],[0.41,0.174],[0.449,0.249],[0.483,0.315],[0.378,0.3],[0.31,0.34],[0.264,0.394],[0.229,0.508],[0.164,0.564],[0.118,0.584],[0.097,0.599],[0.123,0.597],[0.189,0.614],[0.251,0.661],[0.343,0.64],[0.378,0.592],[0.402,0.529],[0.451,0.476],[0.467,0.372],[0.538,0.385],[0.634,0.419],[0.668,0.474],[0.653,0.51],[0.599,0.537],[0.525,0.556],[0.44,0.576],[0.393,0.633],[0.336,0.746],[0.336,0.736],[0.303,0.683],[0.345,0.596],[0.308,0.531],[0.234,0.507],[0.15,0.494],[0.093,0.493],[0.101,0.483],[0.134,0.462],[0.186,0.411],[0.24,0.35],[0.235,0.279],[0.31,0.225],[0.29,0.154],[0.227,0.106],[0.15,0.074],[0.096,0.062],[0.063,0.0],[0.054,0.073],[0.009,0.145],[0.046,0.168],[0.074,0.169],[0.137,0.178],[0.208,0.209],[0.258,0.266],[0.29,0.325],[0.286,0.41],[0.404,0.504],[0.478,0.48],[0.52,0.355],[0.482,0.329],[0.53,0.448],[0.612,0.424],[0.649,0.389],[0.673,0.344],[0.714,0.243],[0.757,0.197],[0.789,0.172],[0.826,0.198],[0.862,0.257],[0.901,0.319],[0.979,0.4],[0.911,0.436],[0.844,0.461],[0.797,0.406],[0.767,0.337],[0.735,0.261],[0.709,0.193],[0.675,0.163],[0.65,0.174],[0.619,0.208],[0.561,0.264],[0.49,0.287],[0.417,0.283],[0.354,0.234],[0.309,0.158],[0.295,0.083],[0.306,0.022],[0.329,0.009],[0.358,0.017],[0.355,0.052]]},"method":"X-ray","resolution":1.71,"rna_type":"Enzyme cofactor riboswitch","rna_group":"Riboswitch","num_chains":1,"total_rna_len":93,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":95,"global_identity":95,"pocket_motifs":["junction","internal loop","stem"],"rmsd":1.85,"host_chain_rmsd":1.85,"pocket_rmsd":1.54,"lig_bsa":484.4,"ligand_burial":0.895,"tm_score":0.809,"rg_apo":21.05,"rg_holo":20.9,"rg_delta":-0.15,"bp_rewire_src":"dssr","bp_formed":2,"bp_broken":3,"bp_conserved":42,"bp_formed_wc":0,"bp_broken_wc":1,"bp_conserved_wc":30,"maxd":5.3,"water":3,"hbonds":6,"mw":398.4,"logp":-3.26,"thumb_img":true,"thumb_v":1785444676,"apo_alts":[],"n_apo_copies":0},{"id":"5FK1_SAM_A_B_1095_pocket","title":"5FK1 (SAM) vs 3IQP (apo)","struct_title":"SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is UG","holo_pdb":"5FK1","ligand":"SAM","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"1095","apo_pdb":"3IQP","apo_chain":"A","holo_len":94,"apo_len":94,"pocket_size":26,"thumb":{"holo":[[0.613,0.593],[0.561,0.658],[0.554,0.723],[0.565,0.744],[0.581,0.723],[0.593,0.674],[0.587,0.598],[0.546,0.519],[0.481,0.443],[0.601,0.471],[0.669,0.426],[0.72,0.367],[0.776,0.259],[0.807,0.14],[0.861,0.192],[0.888,0.184],[0.865,0.181],[0.817,0.148],[0.756,0.105],[0.661,0.131],[0.607,0.157],[0.592,0.221],[0.544,0.277],[0.53,0.389],[0.443,0.374],[0.362,0.336],[0.318,0.284],[0.341,0.244],[0.4,0.215],[0.479,0.195],[0.568,0.176],[0.608,0.117],[0.682,0.03],[0.682,0.0],[0.718,0.087],[0.651,0.163],[0.657,0.236],[0.733,0.266],[0.819,0.28],[0.883,0.286],[0.898,0.297],[0.862,0.317],[0.807,0.361],[0.747,0.422],[0.74,0.497],[0.755,0.578],[0.715,0.62],[0.784,0.659],[0.866,0.678],[0.916,0.691],[0.962,0.742],[0.967,0.672],[1.0,0.601],[0.961,0.574],[0.926,0.575],[0.853,0.579],[0.78,0.545],[0.727,0.496],[0.699,0.434],[0.702,0.357],[0.592,0.256],[0.516,0.275],[0.473,0.401],[0.504,0.429],[0.467,0.306],[0.382,0.328],[0.35,0.364],[0.315,0.418],[0.276,0.513],[0.233,0.564],[0.198,0.6],[0.168,0.573],[0.134,0.504],[0.091,0.436],[0.0,0.372],[0.068,0.337],[0.137,0.304],[0.187,0.355],[0.222,0.424],[0.256,0.498],[0.288,0.568],[0.319,0.598],[0.34,0.589],[0.369,0.546],[0.427,0.498],[0.502,0.478],[0.578,0.489],[0.645,0.535],[0.69,0.607],[0.703,0.686],[0.691,0.748],[0.665,0.765],[0.635,0.759],[0.64,0.732]],"apo":[[0.606,0.591],[0.573,0.654],[0.56,0.721],[0.57,0.74],[0.576,0.716],[0.589,0.666],[0.586,0.591],[0.546,0.515],[0.511,0.447],[0.618,0.462],[0.686,0.421],[0.733,0.367],[0.767,0.252],[0.833,0.194],[0.88,0.175],[0.9,0.159],[0.874,0.162],[0.807,0.145],[0.743,0.098],[0.651,0.12],[0.616,0.169],[0.592,0.232],[0.542,0.286],[0.526,0.391],[0.454,0.379],[0.357,0.345],[0.323,0.288],[0.338,0.252],[0.393,0.225],[0.468,0.205],[0.553,0.185],[0.601,0.127],[0.658,0.012],[0.658,0.022],[0.691,0.076],[0.649,0.164],[0.687,0.23],[0.762,0.254],[0.847,0.266],[0.905,0.267],[0.896,0.277],[0.864,0.298],[0.811,0.35],[0.758,0.411],[0.762,0.483],[0.687,0.538],[0.707,0.611],[0.771,0.659],[0.849,0.691],[0.903,0.702],[0.937,0.765],[0.947,0.691],[0.991,0.618],[0.954,0.595],[0.925,0.595],[0.862,0.586],[0.789,0.555],[0.739,0.497],[0.707,0.437],[0.71,0.352],[0.59,0.257],[0.516,0.281],[0.474,0.407],[0.512,0.435],[0.463,0.314],[0.38,0.338],[0.342,0.374],[0.317,0.42],[0.277,0.522],[0.233,0.569],[0.202,0.594],[0.165,0.568],[0.128,0.508],[0.088,0.445],[0.009,0.364],[0.077,0.328],[0.145,0.302],[0.193,0.357],[0.224,0.426],[0.256,0.504],[0.283,0.573],[0.317,0.603],[0.342,0.592],[0.373,0.558],[0.432,0.501],[0.503,0.478],[0.578,0.481],[0.642,0.53],[0.687,0.606],[0.701,0.683],[0.691,0.745],[0.667,0.758],[0.637,0.751],[0.64,0.716]]},"method":"X-ray","resolution":2.5,"rna_type":"Enzyme cofactor riboswitch","rna_group":"Riboswitch","num_chains":1,"total_rna_len":94,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":94,"global_identity":94,"pocket_motifs":["junction","internal loop","stem"],"rmsd":1.49,"host_chain_rmsd":1.49,"pocket_rmsd":1.52,"lig_bsa":483.5,"ligand_burial":0.896,"tm_score":0.869,"rg_apo":21.09,"rg_holo":21.11,"rg_delta":0.02,"bp_rewire_src":"dssr","bp_formed":3,"bp_broken":4,"bp_conserved":41,"bp_formed_wc":0,"bp_broken_wc":1,"bp_conserved_wc":29,"maxd":5.5,"water":0,"hbonds":5,"mw":398.4,"logp":-3.26,"thumb_img":true,"thumb_v":1785389623,"apo_alts":[],"n_apo_copies":0},{"id":"5FK2_SAM_A_B_1095_pocket","title":"5FK2 (SAM) vs 3IQP (apo)","struct_title":"SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is GG","holo_pdb":"5FK2","ligand":"SAM","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"1095","apo_pdb":"3IQP","apo_chain":"A","holo_len":94,"apo_len":94,"pocket_size":26,"thumb":{"holo":[[0.613,0.182],[0.563,0.118],[0.553,0.051],[0.564,0.026],[0.577,0.052],[0.594,0.101],[0.585,0.179],[0.547,0.258],[0.485,0.339],[0.605,0.307],[0.676,0.35],[0.728,0.409],[0.77,0.522],[0.807,0.628],[0.867,0.58],[0.898,0.597],[0.882,0.596],[0.823,0.62],[0.768,0.673],[0.672,0.651],[0.621,0.621],[0.599,0.556],[0.549,0.5],[0.533,0.39],[0.446,0.407],[0.362,0.443],[0.32,0.5],[0.345,0.538],[0.407,0.567],[0.487,0.586],[0.576,0.603],[0.617,0.664],[0.696,0.755],[0.699,0.774],[0.73,0.692],[0.663,0.616],[0.671,0.541],[0.749,0.507],[0.837,0.492],[0.9,0.487],[0.912,0.481],[0.876,0.458],[0.819,0.413],[0.753,0.353],[0.747,0.277],[0.758,0.192],[0.716,0.15],[0.788,0.113],[0.876,0.088],[0.926,0.081],[0.951,0.024],[0.958,0.097],[0.993,0.173],[0.966,0.2],[0.933,0.197],[0.859,0.195],[0.788,0.23],[0.731,0.279],[0.706,0.343],[0.712,0.422],[0.598,0.521],[0.523,0.501],[0.475,0.374],[0.505,0.346],[0.472,0.472],[0.383,0.452],[0.344,0.418],[0.313,0.364],[0.272,0.265],[0.228,0.212],[0.193,0.178],[0.164,0.206],[0.132,0.277],[0.091,0.346],[0.0,0.412],[0.068,0.442],[0.139,0.477],[0.189,0.425],[0.224,0.355],[0.256,0.279],[0.29,0.212],[0.317,0.182],[0.339,0.181],[0.365,0.228],[0.426,0.279],[0.502,0.3],[0.58,0.291],[0.648,0.239],[0.69,0.167],[0.702,0.086],[0.691,0.024],[0.665,0.007],[0.632,0.014],[0.633,0.048]],"apo":[[0.608,0.182],[0.573,0.118],[0.559,0.051],[0.569,0.031],[0.576,0.056],[0.589,0.105],[0.587,0.183],[0.547,0.261],[0.513,0.33],[0.621,0.313],[0.691,0.354],[0.74,0.409],[0.777,0.526],[0.844,0.583],[0.893,0.603],[0.913,0.618],[0.887,0.616],[0.818,0.634],[0.755,0.683],[0.66,0.662],[0.624,0.613],[0.598,0.548],[0.547,0.494],[0.529,0.387],[0.456,0.401],[0.357,0.437],[0.323,0.495],[0.339,0.532],[0.396,0.559],[0.472,0.578],[0.56,0.597],[0.609,0.656],[0.669,0.771],[0.668,0.762],[0.702,0.707],[0.658,0.617],[0.695,0.549],[0.771,0.524],[0.857,0.51],[0.917,0.508],[0.908,0.498],[0.874,0.477],[0.82,0.425],[0.764,0.363],[0.768,0.29],[0.69,0.235],[0.711,0.161],[0.775,0.11],[0.854,0.077],[0.909,0.064],[0.943,0.0],[0.953,0.075],[1.0,0.149],[0.962,0.173],[0.933,0.174],[0.868,0.184],[0.795,0.217],[0.745,0.276],[0.712,0.338],[0.717,0.425],[0.596,0.523],[0.52,0.5],[0.475,0.371],[0.514,0.343],[0.466,0.467],[0.381,0.443],[0.341,0.407],[0.316,0.36],[0.273,0.257],[0.228,0.21],[0.195,0.184],[0.158,0.212],[0.121,0.273],[0.081,0.338],[0.002,0.422],[0.072,0.458],[0.141,0.484],[0.19,0.426],[0.22,0.355],[0.252,0.276],[0.278,0.205],[0.312,0.174],[0.338,0.184],[0.371,0.219],[0.431,0.276],[0.505,0.299],[0.58,0.294],[0.645,0.244],[0.69,0.165],[0.704,0.087],[0.692,0.024],[0.668,0.011],[0.637,0.019],[0.641,0.054]]},"method":"X-ray","resolution":2.6,"rna_type":"Enzyme cofactor riboswitch","rna_group":"Riboswitch","num_chains":1,"total_rna_len":94,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":94,"global_identity":94,"pocket_motifs":["junction","internal loop","stem"],"rmsd":1.38,"host_chain_rmsd":1.38,"pocket_rmsd":1.45,"lig_bsa":470.6,"ligand_burial":0.887,"tm_score":0.887,"rg_apo":21.09,"rg_holo":20.94,"rg_delta":-0.15,"bp_rewire_src":"dssr","bp_formed":4,"bp_broken":4,"bp_conserved":41,"bp_formed_wc":0,"bp_broken_wc":1,"bp_conserved_wc":30,"maxd":5.5,"water":0,"hbonds":6,"mw":398.4,"logp":-3.26,"thumb_img":true,"thumb_v":1785389622,"apo_alts":[],"n_apo_copies":0},{"id":"5FK3_SAM_A_B_1095_pocket","title":"5FK3 (SAM) vs 3IQP (apo)","struct_title":"SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is CC","holo_pdb":"5FK3","ligand":"SAM","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"1095","apo_pdb":"3IQP","apo_chain":"A","holo_len":94,"apo_len":94,"pocket_size":26,"thumb":{"holo":[[0.607,0.591],[0.563,0.65],[0.553,0.718],[0.563,0.742],[0.577,0.72],[0.595,0.67],[0.587,0.593],[0.548,0.512],[0.486,0.434],[0.602,0.462],[0.677,0.424],[0.728,0.365],[0.771,0.243],[0.802,0.13],[0.87,0.189],[0.894,0.174],[0.878,0.174],[0.828,0.153],[0.769,0.1],[0.674,0.126],[0.618,0.15],[0.601,0.217],[0.548,0.269],[0.531,0.38],[0.446,0.364],[0.359,0.328],[0.319,0.274],[0.344,0.233],[0.408,0.205],[0.488,0.188],[0.578,0.169],[0.616,0.11],[0.692,0.02],[0.696,0.0],[0.73,0.082],[0.66,0.155],[0.679,0.225],[0.751,0.266],[0.837,0.277],[0.9,0.279],[0.909,0.285],[0.871,0.311],[0.813,0.359],[0.752,0.42],[0.741,0.495],[0.758,0.579],[0.717,0.62],[0.79,0.657],[0.877,0.682],[0.924,0.693],[0.955,0.75],[0.965,0.675],[1.0,0.602],[0.968,0.572],[0.934,0.575],[0.858,0.578],[0.785,0.544],[0.73,0.495],[0.704,0.432],[0.711,0.353],[0.596,0.254],[0.523,0.269],[0.477,0.395],[0.505,0.425],[0.472,0.299],[0.383,0.319],[0.342,0.355],[0.316,0.407],[0.274,0.507],[0.23,0.557],[0.2,0.592],[0.166,0.568],[0.134,0.499],[0.092,0.426],[0.0,0.367],[0.069,0.329],[0.137,0.295],[0.187,0.348],[0.223,0.419],[0.258,0.492],[0.289,0.561],[0.319,0.591],[0.338,0.586],[0.368,0.54],[0.429,0.488],[0.502,0.468],[0.582,0.483],[0.649,0.532],[0.692,0.607],[0.704,0.686],[0.69,0.747],[0.662,0.764],[0.629,0.758],[0.633,0.726]],"apo":[[0.609,0.587],[0.574,0.651],[0.56,0.719],[0.569,0.739],[0.576,0.715],[0.59,0.665],[0.587,0.589],[0.548,0.511],[0.513,0.443],[0.621,0.459],[0.691,0.419],[0.739,0.364],[0.776,0.247],[0.843,0.19],[0.892,0.171],[0.912,0.155],[0.886,0.157],[0.818,0.138],[0.755,0.09],[0.66,0.111],[0.624,0.16],[0.599,0.224],[0.548,0.278],[0.53,0.384],[0.457,0.371],[0.359,0.335],[0.325,0.277],[0.341,0.241],[0.397,0.214],[0.473,0.195],[0.56,0.176],[0.609,0.118],[0.669,0.002],[0.669,0.012],[0.702,0.067],[0.658,0.156],[0.695,0.223],[0.771,0.249],[0.857,0.262],[0.916,0.264],[0.907,0.274],[0.873,0.296],[0.819,0.347],[0.764,0.409],[0.768,0.482],[0.69,0.537],[0.71,0.61],[0.775,0.661],[0.853,0.694],[0.908,0.706],[0.941,0.771],[0.952,0.696],[0.998,0.622],[0.96,0.598],[0.932,0.597],[0.868,0.587],[0.795,0.554],[0.744,0.496],[0.712,0.434],[0.717,0.348],[0.596,0.25],[0.52,0.273],[0.476,0.401],[0.515,0.429],[0.467,0.306],[0.382,0.329],[0.343,0.365],[0.318,0.411],[0.275,0.514],[0.23,0.561],[0.197,0.587],[0.16,0.56],[0.123,0.499],[0.084,0.435],[0.005,0.351],[0.075,0.315],[0.144,0.289],[0.192,0.346],[0.222,0.417],[0.254,0.496],[0.28,0.566],[0.314,0.597],[0.34,0.586],[0.373,0.551],[0.433,0.495],[0.506,0.472],[0.581,0.477],[0.645,0.527],[0.691,0.606],[0.704,0.683],[0.692,0.746],[0.669,0.759],[0.638,0.75],[0.642,0.715]]},"method":"X-ray","resolution":2.5,"rna_type":"Enzyme cofactor riboswitch","rna_group":"Riboswitch","num_chains":1,"total_rna_len":94,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":93,"global_identity":93,"pocket_motifs":["junction","internal loop","stem"],"rmsd":1.64,"host_chain_rmsd":1.64,"pocket_rmsd":1.48,"lig_bsa":471.0,"ligand_burial":0.89,"tm_score":0.865,"rg_apo":21.09,"rg_holo":21.05,"rg_delta":-0.04,"bp_rewire_src":"dssr","bp_formed":6,"bp_broken":4,"bp_conserved":41,"bp_formed_wc":0,"bp_broken_wc":1,"bp_conserved_wc":30,"maxd":5.7,"water":0,"hbonds":7,"mw":398.4,"logp":-3.26,"thumb_img":true,"thumb_v":1785389623,"apo_alts":[],"n_apo_copies":0},{"id":"5FK4_SAM_A_B_1094_pocket","title":"5FK4 (SAM) vs 3IQP (apo)","struct_title":"SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is UU","holo_pdb":"5FK4","ligand":"SAM","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"1094","apo_pdb":"3IQP","apo_chain":"A","holo_len":93,"apo_len":94,"pocket_size":25,"thumb":{"holo":[[0.411,0.211],[0.451,0.118],[0.444,0.049],[0.421,0.031],[0.413,0.06],[0.402,0.112],[0.416,0.191],[0.452,0.267],[0.509,0.344],[0.394,0.328],[0.32,0.364],[0.267,0.42],[0.186,0.53],[0.181,0.648],[0.103,0.58],[0.076,0.589],[0.104,0.597],[0.172,0.612],[0.238,0.672],[0.338,0.65],[0.374,0.603],[0.412,0.541],[0.464,0.489],[0.481,0.38],[0.558,0.395],[0.644,0.432],[0.686,0.486],[0.666,0.527],[0.614,0.558],[0.536,0.577],[0.445,0.588],[0.39,0.64],[0.312,0.742],[0.31,0.734],[0.282,0.672],[0.343,0.6],[0.298,0.544],[0.228,0.502],[0.143,0.487],[0.078,0.483],[0.073,0.477],[0.117,0.458],[0.18,0.421],[0.243,0.361],[0.261,0.283],[0.242,0.201],[0.28,0.18],[0.217,0.135],[0.142,0.102],[0.093,0.074],[0.066,0.007],[0.046,0.077],[0.02,0.15],[0.041,0.197],[0.065,0.208],[0.132,0.226],[0.212,0.244],[0.27,0.291],[0.295,0.353],[0.285,0.435],[0.411,0.528],[0.487,0.502],[0.523,0.377],[0.498,0.341],[0.544,0.463],[0.623,0.439],[0.667,0.406],[0.697,0.349],[0.734,0.246],[0.773,0.196],[0.802,0.18],[0.837,0.219],[0.867,0.296],[0.906,0.366],[1.0,0.422],[0.928,0.457],[0.856,0.487],[0.809,0.437],[0.774,0.372],[0.739,0.299],[0.705,0.226],[0.68,0.178],[0.658,0.181],[0.632,0.219],[0.574,0.267],[0.497,0.3],[0.421,0.3],[0.353,0.258],[0.305,0.181],[0.287,0.107],[0.297,0.042],[0.329,0.026],[0.364,0.031]],"apo":[[0.392,0.187],[0.427,0.123],[0.441,0.055],[0.432,0.035],[0.425,0.058],[0.411,0.108],[0.413,0.185],[0.452,0.263],[0.486,0.331],[0.378,0.314],[0.308,0.355],[0.259,0.41],[0.222,0.527],[0.154,0.584],[0.106,0.603],[0.085,0.619],[0.112,0.618],[0.18,0.637],[0.243,0.685],[0.338,0.665],[0.375,0.616],[0.401,0.551],[0.452,0.497],[0.47,0.391],[0.544,0.405],[0.642,0.441],[0.676,0.499],[0.66,0.535],[0.603,0.562],[0.526,0.58],[0.439,0.6],[0.389,0.658],[0.329,0.774],[0.329,0.763],[0.296,0.708],[0.34,0.62],[0.304,0.552],[0.228,0.526],[0.141,0.512],[0.082,0.51],[0.091,0.499],[0.124,0.478],[0.179,0.426],[0.235,0.364],[0.231,0.291],[0.309,0.236],[0.289,0.163],[0.225,0.112],[0.146,0.078],[0.091,0.065],[0.058,0.0],[0.047,0.075],[0.0,0.149],[0.038,0.173],[0.067,0.175],[0.132,0.185],[0.205,0.219],[0.255,0.278],[0.287,0.339],[0.282,0.426],[0.403,0.525],[0.479,0.502],[0.524,0.373],[0.485,0.346],[0.533,0.469],[0.618,0.446],[0.657,0.411],[0.683,0.365],[0.727,0.261],[0.772,0.214],[0.804,0.188],[0.841,0.215],[0.878,0.276],[0.917,0.341],[0.997,0.426],[0.927,0.462],[0.857,0.487],[0.809,0.429],[0.779,0.358],[0.747,0.279],[0.721,0.208],[0.687,0.178],[0.662,0.188],[0.629,0.224],[0.568,0.28],[0.495,0.303],[0.419,0.297],[0.355,0.246],[0.309,0.168],[0.297,0.09],[0.309,0.027],[0.333,0.014],[0.363,0.023],[0.36,0.059]]},"method":"X-ray","resolution":2.43,"rna_type":"Enzyme cofactor riboswitch","rna_group":"Riboswitch","num_chains":1,"total_rna_len":93,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":92,"global_identity":91,"pocket_motifs":["junction","internal loop","stem"],"rmsd":1.73,"host_chain_rmsd":1.73,"pocket_rmsd":1.67,"lig_bsa":478.0,"ligand_burial":0.89,"tm_score":0.842,"rg_apo":20.98,"rg_holo":20.73,"rg_delta":-0.25,"bp_rewire_src":"dssr","bp_formed":2,"bp_broken":6,"bp_conserved":39,"bp_formed_wc":0,"bp_broken_wc":1,"bp_conserved_wc":30,"maxd":6.0,"water":1,"hbonds":7,"mw":398.4,"logp":-3.26,"thumb_img":true,"thumb_v":1785389623,"apo_alts":[],"n_apo_copies":0},{"id":"5FK5_SAM_A_B_1095_pocket","title":"5FK5 (SAM) vs 3IQP (apo)","struct_title":"SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is AA","holo_pdb":"5FK5","ligand":"SAM","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"1095","apo_pdb":"3IQP","apo_chain":"A","holo_len":94,"apo_len":94,"pocket_size":24,"thumb":{"holo":[[0.397,0.182],[0.44,0.121],[0.451,0.052],[0.442,0.033],[0.429,0.051],[0.41,0.102],[0.419,0.18],[0.456,0.26],[0.513,0.335],[0.406,0.313],[0.33,0.357],[0.28,0.419],[0.207,0.527],[0.226,0.647],[0.132,0.578],[0.1,0.592],[0.125,0.592],[0.187,0.607],[0.246,0.668],[0.342,0.641],[0.386,0.602],[0.41,0.534],[0.465,0.482],[0.478,0.371],[0.555,0.391],[0.634,0.423],[0.686,0.481],[0.664,0.517],[0.61,0.547],[0.527,0.571],[0.436,0.584],[0.391,0.641],[0.321,0.733],[0.314,0.736],[0.289,0.671],[0.347,0.592],[0.32,0.525],[0.247,0.496],[0.157,0.49],[0.097,0.484],[0.091,0.474],[0.129,0.461],[0.191,0.416],[0.256,0.356],[0.264,0.28],[0.247,0.196],[0.291,0.157],[0.223,0.117],[0.124,0.095],[0.072,0.081],[0.036,0.029],[0.03,0.1],[0.0,0.175],[0.04,0.203],[0.081,0.193],[0.149,0.191],[0.222,0.226],[0.278,0.275],[0.302,0.34],[0.289,0.417],[0.408,0.509],[0.486,0.492],[0.529,0.367],[0.501,0.336],[0.541,0.459],[0.626,0.436],[0.663,0.399],[0.69,0.352],[0.735,0.258],[0.781,0.211],[0.811,0.178],[0.846,0.206],[0.873,0.271],[0.913,0.349],[1.0,0.416],[0.931,0.444],[0.859,0.479],[0.815,0.421],[0.778,0.35],[0.747,0.278],[0.724,0.209],[0.692,0.172],[0.669,0.172],[0.64,0.22],[0.579,0.265],[0.501,0.293],[0.426,0.286],[0.357,0.238],[0.316,0.166],[0.304,0.092],[0.318,0.027],[0.342,0.014],[0.373,0.023],[0.366,0.049]],"apo":[[0.392,0.179],[0.428,0.116],[0.442,0.05],[0.434,0.032],[0.427,0.056],[0.414,0.105],[0.416,0.182],[0.454,0.259],[0.488,0.328],[0.382,0.31],[0.312,0.35],[0.264,0.403],[0.227,0.518],[0.16,0.574],[0.112,0.592],[0.091,0.607],[0.116,0.604],[0.183,0.623],[0.245,0.67],[0.339,0.651],[0.375,0.603],[0.401,0.54],[0.452,0.487],[0.469,0.382],[0.541,0.395],[0.638,0.432],[0.672,0.489],[0.656,0.526],[0.6,0.552],[0.525,0.57],[0.439,0.589],[0.39,0.646],[0.33,0.759],[0.331,0.75],[0.298,0.695],[0.341,0.607],[0.305,0.54],[0.23,0.514],[0.146,0.5],[0.088,0.499],[0.097,0.489],[0.131,0.469],[0.185,0.419],[0.24,0.358],[0.237,0.286],[0.314,0.232],[0.294,0.159],[0.231,0.109],[0.154,0.075],[0.1,0.063],[0.068,0.0],[0.057,0.074],[0.01,0.146],[0.047,0.17],[0.075,0.17],[0.138,0.18],[0.21,0.213],[0.259,0.271],[0.291,0.333],[0.286,0.419],[0.404,0.516],[0.479,0.494],[0.524,0.368],[0.486,0.339],[0.532,0.462],[0.616,0.439],[0.655,0.404],[0.68,0.357],[0.723,0.256],[0.767,0.21],[0.801,0.186],[0.837,0.214],[0.874,0.275],[0.912,0.338],[0.989,0.421],[0.92,0.456],[0.852,0.481],[0.805,0.425],[0.776,0.355],[0.745,0.276],[0.719,0.207],[0.685,0.175],[0.66,0.185],[0.627,0.218],[0.567,0.274],[0.495,0.296],[0.42,0.291],[0.357,0.241],[0.313,0.163],[0.301,0.086],[0.312,0.023],[0.335,0.01],[0.365,0.018],[0.361,0.052]]},"method":"X-ray","resolution":3.315,"rna_type":"Enzyme cofactor riboswitch","rna_group":"Riboswitch","num_chains":1,"total_rna_len":94,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":94,"global_identity":94,"pocket_motifs":["junction","internal loop","stem"],"rmsd":2.44,"host_chain_rmsd":2.44,"pocket_rmsd":1.51,"lig_bsa":480.5,"ligand_burial":0.901,"tm_score":0.911,"rg_apo":20.93,"rg_holo":21.05,"rg_delta":0.12,"bp_rewire_src":"dssr","bp_formed":3,"bp_broken":6,"bp_conserved":39,"bp_formed_wc":0,"bp_broken_wc":1,"bp_conserved_wc":30,"maxd":10.4,"water":0,"hbonds":5,"mw":398.4,"logp":-3.26,"thumb_img":true,"thumb_v":1785389623,"apo_alts":[],"n_apo_copies":0},{"id":"5FK6_SAM_A_B_1095_pocket","title":"5FK6 (SAM) vs 3IQP (apo)","struct_title":"SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is CA","holo_pdb":"5FK6","ligand":"SAM","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"1095","apo_pdb":"3IQP","apo_chain":"A","holo_len":94,"apo_len":94,"pocket_size":24,"thumb":{"holo":[[0.606,0.189],[0.564,0.125],[0.556,0.059],[0.567,0.035],[0.58,0.059],[0.597,0.108],[0.586,0.184],[0.552,0.265],[0.487,0.338],[0.607,0.318],[0.675,0.354],[0.732,0.416],[0.787,0.52],[0.797,0.629],[0.887,0.585],[0.912,0.6],[0.895,0.609],[0.84,0.631],[0.769,0.673],[0.674,0.652],[0.619,0.623],[0.6,0.557],[0.546,0.508],[0.531,0.395],[0.442,0.41],[0.359,0.443],[0.316,0.499],[0.341,0.538],[0.404,0.569],[0.482,0.589],[0.574,0.604],[0.616,0.665],[0.696,0.754],[0.692,0.776],[0.726,0.691],[0.659,0.62],[0.676,0.549],[0.759,0.515],[0.842,0.493],[0.902,0.488],[0.919,0.481],[0.876,0.463],[0.822,0.417],[0.754,0.357],[0.746,0.282],[0.757,0.196],[0.719,0.161],[0.787,0.119],[0.872,0.095],[0.923,0.085],[0.956,0.036],[0.961,0.107],[0.997,0.179],[0.96,0.204],[0.932,0.202],[0.864,0.205],[0.791,0.238],[0.732,0.285],[0.706,0.35],[0.714,0.424],[0.597,0.527],[0.523,0.504],[0.477,0.378],[0.506,0.347],[0.471,0.474],[0.384,0.454],[0.343,0.42],[0.312,0.363],[0.274,0.264],[0.228,0.214],[0.196,0.183],[0.165,0.212],[0.133,0.28],[0.094,0.351],[0.0,0.412],[0.069,0.448],[0.142,0.482],[0.189,0.429],[0.225,0.359],[0.26,0.284],[0.289,0.214],[0.318,0.181],[0.339,0.185],[0.366,0.228],[0.427,0.278],[0.503,0.303],[0.582,0.295],[0.652,0.246],[0.695,0.177],[0.704,0.094],[0.692,0.035],[0.666,0.015],[0.635,0.022],[0.638,0.052]],"apo":[[0.615,0.189],[0.578,0.125],[0.563,0.058],[0.571,0.038],[0.578,0.062],[0.592,0.111],[0.59,0.188],[0.552,0.266],[0.518,0.335],[0.625,0.316],[0.696,0.356],[0.745,0.41],[0.784,0.526],[0.852,0.582],[0.901,0.601],[0.923,0.617],[0.897,0.615],[0.829,0.635],[0.767,0.684],[0.672,0.665],[0.635,0.617],[0.608,0.552],[0.556,0.499],[0.538,0.393],[0.465,0.408],[0.367,0.445],[0.334,0.503],[0.35,0.539],[0.406,0.565],[0.482,0.583],[0.57,0.601],[0.62,0.659],[0.682,0.773],[0.68,0.763],[0.714,0.708],[0.669,0.62],[0.705,0.552],[0.781,0.525],[0.866,0.51],[0.925,0.508],[0.915,0.497],[0.881,0.477],[0.826,0.425],[0.769,0.364],[0.772,0.292],[0.694,0.238],[0.713,0.164],[0.777,0.113],[0.855,0.078],[0.909,0.065],[0.941,0.0],[0.952,0.074],[1.0,0.148],[0.963,0.172],[0.935,0.174],[0.871,0.185],[0.799,0.219],[0.749,0.278],[0.718,0.34],[0.723,0.427],[0.604,0.526],[0.528,0.504],[0.482,0.377],[0.521,0.349],[0.475,0.473],[0.389,0.45],[0.35,0.416],[0.325,0.369],[0.281,0.267],[0.235,0.221],[0.201,0.196],[0.164,0.223],[0.127,0.284],[0.089,0.349],[0.011,0.434],[0.082,0.47],[0.151,0.494],[0.198,0.436],[0.227,0.365],[0.258,0.285],[0.283,0.215],[0.317,0.184],[0.344,0.194],[0.377,0.228],[0.438,0.284],[0.512,0.306],[0.587,0.3],[0.65,0.248],[0.694,0.169],[0.706,0.092],[0.694,0.029],[0.671,0.017],[0.641,0.026],[0.646,0.061]]},"method":"X-ray","resolution":2.5,"rna_type":"Enzyme cofactor riboswitch","rna_group":"Riboswitch","num_chains":1,"total_rna_len":94,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":92,"global_identity":91,"pocket_motifs":["junction","internal loop","stem"],"rmsd":2.49,"host_chain_rmsd":2.49,"pocket_rmsd":1.52,"lig_bsa":463.6,"ligand_burial":0.862,"tm_score":0.892,"rg_apo":20.86,"rg_holo":20.97,"rg_delta":0.11,"bp_rewire_src":"dssr","bp_formed":3,"bp_broken":5,"bp_conserved":40,"bp_formed_wc":0,"bp_broken_wc":1,"bp_conserved_wc":30,"maxd":11.0,"water":0,"hbonds":7,"mw":398.4,"logp":-3.26,"thumb_img":true,"thumb_v":1785389623,"apo_alts":[],"n_apo_copies":0},{"id":"5FKD_SAM_A_B_1095_pocket","title":"5FKD (SAM) vs 3IQP (apo)","struct_title":"SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is UA","holo_pdb":"5FKD","ligand":"SAM","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"1095","apo_pdb":"3IQP","apo_chain":"A","holo_len":94,"apo_len":94,"pocket_size":25,"thumb":{"holo":[[0.608,0.583],[0.566,0.649],[0.552,0.72],[0.566,0.743],[0.58,0.72],[0.594,0.669],[0.588,0.59],[0.552,0.509],[0.488,0.437],[0.604,0.454],[0.675,0.418],[0.73,0.356],[0.801,0.249],[0.795,0.142],[0.878,0.193],[0.912,0.183],[0.886,0.174],[0.822,0.155],[0.767,0.103],[0.668,0.122],[0.616,0.149],[0.6,0.217],[0.549,0.27],[0.53,0.389],[0.445,0.364],[0.365,0.327],[0.323,0.279],[0.347,0.238],[0.409,0.209],[0.487,0.188],[0.578,0.169],[0.613,0.109],[0.693,0.022],[0.695,0.0],[0.722,0.085],[0.66,0.158],[0.671,0.229],[0.754,0.261],[0.843,0.276],[0.909,0.286],[0.923,0.296],[0.89,0.31],[0.829,0.357],[0.755,0.42],[0.744,0.493],[0.751,0.575],[0.717,0.611],[0.785,0.647],[0.882,0.673],[0.934,0.688],[0.959,0.738],[0.961,0.667],[0.994,0.596],[0.965,0.562],[0.935,0.566],[0.859,0.571],[0.787,0.538],[0.733,0.491],[0.711,0.425],[0.715,0.349],[0.609,0.252],[0.533,0.273],[0.477,0.399],[0.507,0.429],[0.477,0.303],[0.387,0.323],[0.344,0.356],[0.313,0.408],[0.272,0.508],[0.227,0.559],[0.2,0.591],[0.166,0.561],[0.133,0.494],[0.093,0.427],[0.0,0.367],[0.073,0.322],[0.144,0.289],[0.193,0.342],[0.225,0.414],[0.26,0.489],[0.29,0.558],[0.321,0.589],[0.338,0.595],[0.366,0.55],[0.425,0.499],[0.501,0.474],[0.581,0.479],[0.651,0.529],[0.692,0.6],[0.703,0.677],[0.691,0.74],[0.668,0.756],[0.633,0.761],[0.641,0.731]],"apo":[[0.615,0.587],[0.579,0.65],[0.564,0.717],[0.572,0.736],[0.579,0.712],[0.593,0.663],[0.591,0.586],[0.553,0.508],[0.52,0.439],[0.627,0.458],[0.697,0.418],[0.746,0.364],[0.785,0.249],[0.852,0.193],[0.901,0.174],[0.922,0.159],[0.896,0.161],[0.829,0.142],[0.767,0.093],[0.672,0.112],[0.636,0.16],[0.609,0.224],[0.557,0.277],[0.539,0.383],[0.466,0.368],[0.369,0.331],[0.335,0.273],[0.351,0.237],[0.408,0.21],[0.484,0.193],[0.571,0.175],[0.621,0.118],[0.682,0.004],[0.681,0.013],[0.714,0.069],[0.669,0.157],[0.706,0.225],[0.781,0.251],[0.866,0.266],[0.924,0.268],[0.915,0.278],[0.881,0.298],[0.826,0.349],[0.77,0.41],[0.772,0.483],[0.695,0.536],[0.714,0.61],[0.777,0.661],[0.855,0.696],[0.909,0.709],[0.941,0.773],[0.952,0.699],[1.0,0.626],[0.963,0.601],[0.935,0.6],[0.871,0.59],[0.799,0.556],[0.75,0.496],[0.718,0.434],[0.724,0.348],[0.605,0.249],[0.529,0.271],[0.483,0.398],[0.522,0.426],[0.476,0.303],[0.391,0.325],[0.352,0.36],[0.326,0.406],[0.282,0.508],[0.237,0.554],[0.203,0.579],[0.166,0.551],[0.13,0.49],[0.092,0.425],[0.014,0.341],[0.084,0.306],[0.154,0.281],[0.201,0.339],[0.229,0.41],[0.26,0.489],[0.286,0.559],[0.319,0.591],[0.345,0.581],[0.379,0.547],[0.439,0.491],[0.513,0.47],[0.587,0.476],[0.651,0.527],[0.695,0.605],[0.707,0.683],[0.694,0.746],[0.671,0.758],[0.641,0.75],[0.645,0.715]]},"method":"X-ray","resolution":3.0,"rna_type":"Enzyme cofactor riboswitch","rna_group":"Riboswitch","num_chains":1,"total_rna_len":94,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":93,"global_identity":93,"pocket_motifs":["junction","internal loop","stem"],"rmsd":2.46,"host_chain_rmsd":2.46,"pocket_rmsd":1.47,"lig_bsa":452.8,"ligand_burial":0.872,"tm_score":0.884,"rg_apo":20.97,"rg_holo":21.08,"rg_delta":0.11,"bp_rewire_src":"dssr","bp_formed":2,"bp_broken":4,"bp_conserved":41,"bp_formed_wc":0,"bp_broken_wc":1,"bp_conserved_wc":30,"maxd":10.6,"water":0,"hbonds":6,"mw":398.4,"logp":-3.26,"thumb_img":true,"thumb_v":1785389623,"apo_alts":[],"n_apo_copies":0},{"id":"5FKE_SAM_A_B_1095_pocket","title":"5FKE (SAM) vs 3IQP (apo)","struct_title":"SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is GU","holo_pdb":"5FKE","ligand":"SAM","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"1095","apo_pdb":"3IQP","apo_chain":"A","holo_len":94,"apo_len":94,"pocket_size":25,"thumb":{"holo":[[0.605,0.583],[0.56,0.648],[0.552,0.711],[0.564,0.734],[0.578,0.71],[0.595,0.659],[0.585,0.584],[0.551,0.503],[0.488,0.431],[0.599,0.442],[0.675,0.405],[0.724,0.348],[0.776,0.239],[0.795,0.128],[0.87,0.187],[0.906,0.169],[0.89,0.161],[0.832,0.143],[0.762,0.103],[0.663,0.117],[0.602,0.142],[0.583,0.209],[0.539,0.265],[0.521,0.379],[0.438,0.363],[0.357,0.326],[0.318,0.271],[0.336,0.233],[0.393,0.205],[0.476,0.185],[0.563,0.169],[0.605,0.107],[0.685,0.032],[0.693,0.006],[0.712,0.091],[0.641,0.167],[0.69,0.223],[0.768,0.255],[0.85,0.27],[0.908,0.274],[0.913,0.284],[0.875,0.304],[0.815,0.348],[0.753,0.408],[0.736,0.483],[0.755,0.566],[0.713,0.611],[0.784,0.646],[0.871,0.667],[0.927,0.679],[0.957,0.737],[0.968,0.656],[1.0,0.586],[0.961,0.562],[0.925,0.564],[0.855,0.567],[0.781,0.531],[0.727,0.483],[0.703,0.418],[0.716,0.339],[0.602,0.242],[0.523,0.268],[0.472,0.393],[0.511,0.423],[0.466,0.3],[0.383,0.32],[0.337,0.354],[0.307,0.406],[0.27,0.505],[0.231,0.554],[0.198,0.582],[0.164,0.554],[0.128,0.485],[0.092,0.417],[0.0,0.357],[0.07,0.315],[0.141,0.285],[0.188,0.339],[0.221,0.405],[0.258,0.481],[0.29,0.547],[0.318,0.585],[0.339,0.579],[0.368,0.542],[0.428,0.496],[0.503,0.472],[0.582,0.475],[0.649,0.521],[0.693,0.596],[0.703,0.675],[0.691,0.738],[0.667,0.753],[0.634,0.753],[0.641,0.711]],"apo":[[0.608,0.581],[0.573,0.644],[0.56,0.711],[0.569,0.729],[0.576,0.705],[0.589,0.655],[0.586,0.579],[0.547,0.502],[0.513,0.434],[0.62,0.45],[0.688,0.409],[0.736,0.355],[0.771,0.24],[0.838,0.183],[0.885,0.164],[0.905,0.149],[0.879,0.152],[0.812,0.135],[0.749,0.087],[0.656,0.109],[0.62,0.157],[0.595,0.22],[0.545,0.273],[0.529,0.379],[0.456,0.367],[0.359,0.332],[0.325,0.275],[0.34,0.238],[0.396,0.211],[0.471,0.191],[0.557,0.172],[0.605,0.114],[0.664,0.0],[0.663,0.009],[0.697,0.064],[0.654,0.152],[0.691,0.219],[0.766,0.244],[0.851,0.256],[0.909,0.257],[0.901,0.267],[0.868,0.287],[0.814,0.339],[0.76,0.4],[0.764,0.472],[0.688,0.527],[0.708,0.6],[0.772,0.65],[0.85,0.682],[0.904,0.694],[0.938,0.756],[0.948,0.682],[0.993,0.609],[0.956,0.586],[0.927,0.586],[0.863,0.577],[0.791,0.545],[0.741,0.487],[0.709,0.426],[0.713,0.34],[0.593,0.244],[0.519,0.267],[0.475,0.394],[0.514,0.422],[0.466,0.3],[0.382,0.324],[0.344,0.36],[0.319,0.407],[0.277,0.509],[0.233,0.555],[0.201,0.58],[0.164,0.553],[0.127,0.492],[0.088,0.429],[0.009,0.347],[0.078,0.311],[0.146,0.285],[0.194,0.341],[0.224,0.411],[0.256,0.489],[0.283,0.558],[0.317,0.589],[0.342,0.579],[0.374,0.545],[0.433,0.489],[0.505,0.466],[0.579,0.47],[0.643,0.519],[0.689,0.596],[0.702,0.673],[0.691,0.736],[0.668,0.749],[0.637,0.742],[0.64,0.708]]},"method":"X-ray","resolution":2.8,"rna_type":"Enzyme cofactor riboswitch","rna_group":"Riboswitch","num_chains":1,"total_rna_len":94,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":93,"global_identity":93,"pocket_motifs":["junction","internal loop","stem"],"rmsd":1.6,"host_chain_rmsd":1.6,"pocket_rmsd":1.48,"lig_bsa":468.0,"ligand_burial":0.891,"tm_score":0.881,"rg_apo":21.09,"rg_holo":21.13,"rg_delta":0.04,"bp_rewire_src":"dssr","bp_formed":2,"bp_broken":4,"bp_conserved":41,"bp_formed_wc":0,"bp_broken_wc":1,"bp_conserved_wc":31,"maxd":6.8,"water":0,"hbonds":6,"mw":398.4,"logp":-3.26,"thumb_img":true,"thumb_v":1785389623,"apo_alts":[],"n_apo_copies":0},{"id":"5FKF_SAM_A_B_1095_pocket","title":"5FKF (SAM) vs 3IQP (apo)","struct_title":"SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is UC","holo_pdb":"5FKF","ligand":"SAM","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"1095","apo_pdb":"3IQP","apo_chain":"A","holo_len":94,"apo_len":94,"pocket_size":25,"thumb":{"holo":[[0.602,0.175],[0.562,0.116],[0.553,0.05],[0.566,0.027],[0.575,0.049],[0.594,0.098],[0.588,0.175],[0.549,0.255],[0.485,0.333],[0.601,0.304],[0.675,0.348],[0.72,0.404],[0.788,0.519],[0.794,0.637],[0.864,0.583],[0.889,0.594],[0.873,0.604],[0.819,0.618],[0.765,0.67],[0.67,0.649],[0.616,0.622],[0.598,0.557],[0.549,0.503],[0.532,0.394],[0.448,0.407],[0.362,0.442],[0.322,0.495],[0.345,0.533],[0.406,0.564],[0.486,0.584],[0.573,0.603],[0.61,0.662],[0.688,0.749],[0.703,0.776],[0.723,0.692],[0.659,0.615],[0.666,0.543],[0.742,0.511],[0.826,0.496],[0.895,0.495],[0.906,0.486],[0.867,0.459],[0.814,0.413],[0.754,0.351],[0.748,0.278],[0.757,0.194],[0.718,0.151],[0.786,0.112],[0.876,0.09],[0.923,0.079],[0.957,0.021],[0.968,0.093],[1.0,0.171],[0.968,0.196],[0.931,0.195],[0.857,0.189],[0.786,0.225],[0.733,0.275],[0.707,0.337],[0.709,0.413],[0.605,0.512],[0.523,0.502],[0.478,0.37],[0.508,0.346],[0.472,0.471],[0.384,0.447],[0.348,0.415],[0.319,0.362],[0.272,0.263],[0.232,0.21],[0.2,0.176],[0.167,0.203],[0.137,0.27],[0.095,0.339],[0.0,0.402],[0.071,0.441],[0.141,0.475],[0.19,0.423],[0.225,0.351],[0.259,0.277],[0.289,0.207],[0.318,0.178],[0.338,0.185],[0.367,0.228],[0.428,0.276],[0.505,0.298],[0.582,0.285],[0.65,0.233],[0.691,0.161],[0.705,0.086],[0.69,0.019],[0.662,0.002],[0.628,0.009],[0.63,0.044]],"apo":[[0.609,0.182],[0.574,0.118],[0.561,0.051],[0.57,0.031],[0.577,0.055],[0.59,0.104],[0.588,0.181],[0.548,0.259],[0.514,0.327],[0.622,0.31],[0.691,0.351],[0.739,0.406],[0.775,0.522],[0.842,0.58],[0.89,0.599],[0.911,0.615],[0.884,0.613],[0.817,0.631],[0.753,0.679],[0.659,0.658],[0.623,0.61],[0.598,0.545],[0.547,0.491],[0.53,0.385],[0.456,0.398],[0.358,0.434],[0.324,0.491],[0.34,0.527],[0.396,0.555],[0.472,0.573],[0.559,0.593],[0.608,0.651],[0.667,0.767],[0.667,0.757],[0.7,0.702],[0.657,0.613],[0.694,0.546],[0.77,0.521],[0.856,0.508],[0.915,0.506],[0.906,0.496],[0.873,0.475],[0.819,0.423],[0.764,0.361],[0.768,0.288],[0.69,0.233],[0.711,0.16],[0.775,0.11],[0.853,0.076],[0.908,0.064],[0.942,0.0],[0.952,0.075],[0.998,0.149],[0.961,0.172],[0.932,0.173],[0.867,0.183],[0.794,0.216],[0.744,0.274],[0.712,0.336],[0.716,0.422],[0.595,0.519],[0.52,0.496],[0.476,0.368],[0.515,0.34],[0.467,0.463],[0.382,0.439],[0.343,0.404],[0.318,0.357],[0.275,0.254],[0.231,0.207],[0.198,0.182],[0.161,0.208],[0.124,0.269],[0.085,0.333],[0.005,0.417],[0.075,0.453],[0.144,0.479],[0.192,0.422],[0.222,0.351],[0.254,0.272],[0.281,0.202],[0.315,0.172],[0.34,0.182],[0.373,0.217],[0.433,0.274],[0.505,0.297],[0.581,0.292],[0.645,0.242],[0.691,0.164],[0.704,0.087],[0.692,0.024],[0.669,0.011],[0.638,0.02],[0.641,0.055]]},"method":"X-ray","resolution":2.8,"rna_type":"Enzyme cofactor riboswitch","rna_group":"Riboswitch","num_chains":1,"total_rna_len":94,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":93,"global_identity":93,"pocket_motifs":["junction","internal loop","stem"],"rmsd":1.62,"host_chain_rmsd":1.62,"pocket_rmsd":1.48,"lig_bsa":471.9,"ligand_burial":0.884,"tm_score":0.871,"rg_apo":21.09,"rg_holo":21.02,"rg_delta":-0.07,"bp_rewire_src":"dssr","bp_formed":3,"bp_broken":4,"bp_conserved":41,"bp_formed_wc":0,"bp_broken_wc":1,"bp_conserved_wc":29,"maxd":6.3,"water":0,"hbonds":5,"mw":398.4,"logp":-3.26,"thumb_img":true,"thumb_v":1785389623,"apo_alts":[],"n_apo_copies":0},{"id":"5FKG_SAM_A_B_1095_pocket","title":"5FKG (SAM) vs 3IQP (apo)","struct_title":"SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is CG","holo_pdb":"5FKG","ligand":"SAM","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"1095","apo_pdb":"3IQP","apo_chain":"A","holo_len":94,"apo_len":94,"pocket_size":25,"thumb":{"holo":[[0.389,0.181],[0.437,0.112],[0.446,0.047],[0.435,0.023],[0.423,0.044],[0.406,0.094],[0.418,0.169],[0.452,0.246],[0.509,0.326],[0.399,0.311],[0.328,0.35],[0.275,0.404],[0.229,0.517],[0.218,0.644],[0.133,0.579],[0.099,0.587],[0.119,0.591],[0.184,0.608],[0.243,0.659],[0.343,0.644],[0.38,0.592],[0.414,0.532],[0.464,0.477],[0.473,0.37],[0.551,0.389],[0.632,0.421],[0.681,0.473],[0.666,0.511],[0.607,0.541],[0.529,0.566],[0.444,0.581],[0.397,0.637],[0.323,0.742],[0.326,0.74],[0.288,0.674],[0.348,0.592],[0.306,0.529],[0.235,0.5],[0.153,0.484],[0.095,0.48],[0.091,0.472],[0.133,0.455],[0.191,0.408],[0.252,0.348],[0.264,0.273],[0.243,0.19],[0.285,0.147],[0.215,0.11],[0.127,0.086],[0.07,0.071],[0.028,0.019],[0.023,0.094],[0.0,0.167],[0.039,0.194],[0.072,0.189],[0.142,0.186],[0.216,0.221],[0.274,0.27],[0.299,0.334],[0.292,0.412],[0.406,0.512],[0.483,0.487],[0.528,0.362],[0.496,0.333],[0.539,0.454],[0.62,0.432],[0.655,0.393],[0.686,0.342],[0.728,0.246],[0.777,0.203],[0.807,0.173],[0.84,0.201],[0.872,0.27],[0.91,0.343],[1.0,0.407],[0.928,0.444],[0.858,0.473],[0.811,0.417],[0.78,0.348],[0.749,0.274],[0.72,0.201],[0.687,0.16],[0.665,0.17],[0.634,0.211],[0.574,0.257],[0.5,0.282],[0.422,0.277],[0.353,0.232],[0.31,0.159],[0.3,0.081],[0.31,0.02],[0.336,0.008],[0.369,0.012],[0.362,0.052]],"apo":[[0.393,0.172],[0.427,0.108],[0.44,0.042],[0.43,0.024],[0.424,0.048],[0.411,0.098],[0.414,0.175],[0.455,0.252],[0.489,0.321],[0.382,0.306],[0.313,0.347],[0.266,0.401],[0.231,0.517],[0.165,0.576],[0.117,0.595],[0.097,0.609],[0.123,0.606],[0.191,0.623],[0.255,0.67],[0.348,0.648],[0.383,0.599],[0.408,0.535],[0.458,0.482],[0.474,0.375],[0.547,0.387],[0.645,0.422],[0.679,0.479],[0.664,0.516],[0.608,0.544],[0.533,0.564],[0.446,0.584],[0.399,0.642],[0.341,0.757],[0.341,0.749],[0.307,0.694],[0.349,0.604],[0.312,0.537],[0.236,0.513],[0.151,0.501],[0.092,0.5],[0.1,0.491],[0.134,0.47],[0.187,0.419],[0.241,0.357],[0.236,0.284],[0.312,0.228],[0.291,0.155],[0.227,0.105],[0.149,0.073],[0.094,0.062],[0.06,0.0],[0.05,0.075],[0.005,0.148],[0.043,0.171],[0.072,0.171],[0.136,0.179],[0.209,0.211],[0.259,0.269],[0.292,0.33],[0.288,0.416],[0.41,0.512],[0.485,0.488],[0.527,0.36],[0.488,0.332],[0.537,0.454],[0.622,0.43],[0.66,0.393],[0.684,0.346],[0.726,0.243],[0.769,0.196],[0.802,0.171],[0.839,0.199],[0.876,0.259],[0.916,0.322],[0.996,0.404],[0.927,0.441],[0.859,0.467],[0.81,0.411],[0.779,0.342],[0.747,0.264],[0.72,0.194],[0.685,0.163],[0.66,0.173],[0.628,0.207],[0.569,0.264],[0.497,0.288],[0.422,0.284],[0.357,0.235],[0.311,0.158],[0.297,0.081],[0.308,0.018],[0.331,0.004],[0.362,0.011],[0.359,0.045]]},"method":"X-ray","resolution":2.95,"rna_type":"Enzyme cofactor riboswitch","rna_group":"Riboswitch","num_chains":1,"total_rna_len":94,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":94,"global_identity":94,"pocket_motifs":["junction","internal loop","stem"],"rmsd":1.29,"host_chain_rmsd":1.29,"pocket_rmsd":1.41,"lig_bsa":464.6,"ligand_burial":0.873,"tm_score":0.921,"rg_apo":21.09,"rg_holo":20.99,"rg_delta":-0.1,"bp_rewire_src":"dssr","bp_formed":1,"bp_broken":6,"bp_conserved":39,"bp_formed_wc":0,"bp_broken_wc":1,"bp_conserved_wc":30,"maxd":5.6,"water":0,"hbonds":5,"mw":398.4,"logp":-3.26,"thumb_img":true,"thumb_v":1785389623,"apo_alts":[],"n_apo_copies":0},{"id":"5FKH_SAM_A_B_1095_pocket","title":"5FKH (SAM) vs 3IQP (apo)","struct_title":"SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is CU","holo_pdb":"5FKH","ligand":"SAM","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"1095","apo_pdb":"3IQP","apo_chain":"A","holo_len":94,"apo_len":94,"pocket_size":26,"thumb":{"holo":[[0.603,0.179],[0.562,0.119],[0.544,0.052],[0.555,0.028],[0.57,0.05],[0.59,0.101],[0.58,0.178],[0.544,0.256],[0.484,0.333],[0.588,0.31],[0.661,0.343],[0.724,0.415],[0.795,0.519],[0.764,0.644],[0.87,0.581],[0.9,0.594],[0.882,0.593],[0.829,0.622],[0.76,0.667],[0.663,0.653],[0.619,0.618],[0.605,0.553],[0.553,0.504],[0.538,0.392],[0.451,0.407],[0.365,0.441],[0.323,0.502],[0.349,0.538],[0.41,0.565],[0.489,0.583],[0.579,0.603],[0.608,0.661],[0.692,0.75],[0.692,0.763],[0.722,0.68],[0.654,0.607],[0.682,0.54],[0.751,0.506],[0.837,0.494],[0.898,0.484],[0.912,0.475],[0.868,0.459],[0.809,0.412],[0.745,0.349],[0.74,0.276],[0.755,0.192],[0.709,0.152],[0.78,0.114],[0.868,0.088],[0.925,0.076],[0.959,0.023],[0.965,0.094],[1.0,0.169],[0.956,0.195],[0.924,0.193],[0.852,0.189],[0.78,0.225],[0.725,0.275],[0.702,0.339],[0.71,0.416],[0.594,0.515],[0.52,0.495],[0.474,0.369],[0.501,0.343],[0.47,0.468],[0.382,0.451],[0.354,0.423],[0.317,0.362],[0.27,0.261],[0.224,0.212],[0.191,0.18],[0.158,0.205],[0.126,0.273],[0.086,0.349],[0.0,0.412],[0.067,0.445],[0.139,0.477],[0.185,0.423],[0.22,0.351],[0.252,0.279],[0.278,0.209],[0.309,0.179],[0.329,0.174],[0.36,0.217],[0.421,0.267],[0.5,0.296],[0.577,0.285],[0.646,0.236],[0.687,0.165],[0.697,0.083],[0.686,0.024],[0.658,0.008],[0.626,0.013],[0.639,0.046]],"apo":[[0.606,0.183],[0.57,0.119],[0.556,0.053],[0.565,0.033],[0.572,0.057],[0.585,0.106],[0.583,0.182],[0.544,0.26],[0.51,0.328],[0.617,0.31],[0.686,0.351],[0.735,0.405],[0.772,0.52],[0.839,0.577],[0.887,0.596],[0.908,0.611],[0.882,0.609],[0.815,0.627],[0.752,0.676],[0.658,0.655],[0.622,0.607],[0.596,0.543],[0.546,0.49],[0.528,0.385],[0.455,0.399],[0.358,0.435],[0.325,0.492],[0.34,0.528],[0.396,0.555],[0.472,0.573],[0.558,0.592],[0.607,0.649],[0.667,0.763],[0.666,0.754],[0.699,0.699],[0.656,0.611],[0.692,0.544],[0.767,0.518],[0.853,0.505],[0.911,0.503],[0.902,0.493],[0.868,0.472],[0.814,0.421],[0.759,0.36],[0.762,0.287],[0.685,0.233],[0.705,0.16],[0.769,0.11],[0.846,0.076],[0.901,0.064],[0.933,0.0],[0.944,0.074],[0.99,0.147],[0.953,0.171],[0.925,0.172],[0.861,0.182],[0.789,0.215],[0.739,0.274],[0.708,0.335],[0.713,0.421],[0.593,0.518],[0.518,0.496],[0.473,0.369],[0.512,0.341],[0.465,0.463],[0.381,0.441],[0.342,0.405],[0.317,0.359],[0.274,0.257],[0.229,0.211],[0.196,0.186],[0.159,0.213],[0.123,0.274],[0.085,0.338],[0.006,0.421],[0.076,0.456],[0.144,0.481],[0.192,0.425],[0.221,0.354],[0.252,0.276],[0.278,0.206],[0.312,0.175],[0.338,0.185],[0.371,0.22],[0.43,0.276],[0.503,0.298],[0.578,0.293],[0.641,0.243],[0.686,0.165],[0.698,0.088],[0.687,0.025],[0.664,0.013],[0.634,0.021],[0.637,0.056]]},"method":"X-ray","resolution":2.65,"rna_type":"Enzyme cofactor riboswitch","rna_group":"Riboswitch","num_chains":1,"total_rna_len":94,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":93,"global_identity":93,"pocket_motifs":["junction","internal loop","stem"],"rmsd":1.62,"host_chain_rmsd":1.62,"pocket_rmsd":1.51,"lig_bsa":463.6,"ligand_burial":0.861,"tm_score":0.885,"rg_apo":21.09,"rg_holo":21.14,"rg_delta":0.05,"bp_rewire_src":"dssr","bp_formed":3,"bp_broken":7,"bp_conserved":38,"bp_formed_wc":0,"bp_broken_wc":1,"bp_conserved_wc":30,"maxd":6.5,"water":0,"hbonds":8,"mw":398.4,"logp":-3.26,"thumb_img":true,"thumb_v":1785389623,"apo_alts":[],"n_apo_copies":0},{"id":"5SWD_ADE_A_C_101_pocket","title":"5SWD (ADE) vs 5E54 (apo)","struct_title":"Structure of the adenine riboswitch aptamer domain in an intermediate-bound state","holo_pdb":"5SWD","ligand":"ADE","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"101","apo_pdb":"5E54","apo_chain":"B","holo_len":65,"apo_len":68,"pocket_size":12,"thumb":{"holo":[[0.005,0.203],[0.06,0.142],[0.117,0.064],[0.174,0.018],[0.222,0.004],[0.257,0.051],[0.276,0.13],[0.284,0.219],[0.313,0.29],[0.437,0.307],[0.465,0.228],[0.469,0.252],[0.521,0.302],[0.582,0.349],[0.651,0.405],[0.718,0.441],[0.785,0.465],[0.83,0.445],[0.854,0.381],[0.879,0.303],[0.894,0.216],[0.922,0.15],[0.892,0.04],[0.882,0.037],[0.869,0.134],[0.811,0.171],[0.804,0.262],[0.778,0.341],[0.746,0.415],[0.717,0.483],[0.676,0.512],[0.618,0.503],[0.552,0.462],[0.477,0.418],[0.4,0.406],[0.316,0.328],[0.387,0.338],[0.424,0.457],[0.475,0.461],[0.464,0.377],[0.511,0.334],[0.535,0.243],[0.557,0.163],[0.583,0.085],[0.614,0.027],[0.66,0.003],[0.72,0.024],[0.789,0.061],[0.866,0.095],[0.975,0.029],[1.0,0.115],[0.969,0.179],[0.908,0.238],[0.844,0.223],[0.776,0.179],[0.703,0.126],[0.63,0.086],[0.565,0.055],[0.508,0.056],[0.46,0.098],[0.4,0.184],[0.334,0.244],[0.27,0.287],[0.216,0.298],[0.164,0.259]],"apo":[[0.0,0.206],[0.057,0.138],[0.111,0.07],[0.171,0.02],[0.222,0.002],[0.25,0.053],[0.268,0.128],[0.285,0.217],[0.311,0.294],[0.442,0.305],[0.469,0.231],[0.469,0.249],[0.521,0.299],[0.582,0.349],[0.65,0.406],[0.718,0.444],[0.784,0.466],[0.829,0.45],[0.851,0.385],[0.876,0.304],[0.893,0.217],[0.923,0.15],[0.892,0.038],[0.887,0.038],[0.87,0.134],[0.812,0.17],[0.805,0.263],[0.778,0.343],[0.74,0.415],[0.717,0.486],[0.675,0.514],[0.617,0.505],[0.551,0.463],[0.476,0.419],[0.399,0.406],[0.317,0.326],[0.388,0.341],[0.424,0.458],[0.479,0.463],[0.465,0.377],[0.512,0.331],[0.535,0.24],[0.56,0.158],[0.585,0.08],[0.617,0.022],[0.662,0.0],[0.721,0.021],[0.791,0.06],[0.867,0.095],[0.976,0.029],[1.0,0.114],[0.969,0.18],[0.907,0.241],[0.845,0.223],[0.775,0.178],[0.702,0.124],[0.628,0.082],[0.564,0.051],[0.509,0.053],[0.462,0.093],[0.401,0.181],[0.336,0.249],[0.272,0.288],[0.218,0.299],[0.172,0.263]]},"method":"X-ray","resolution":2.5,"rna_type":"Purine-compound riboswitch","rna_group":"Riboswitch","num_chains":1,"total_rna_len":133,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["junction","hairpin loop","stem","single strand"],"rmsd":2.28,"host_chain_rmsd":2.28,"pocket_rmsd":3.83,"lig_bsa":245.9,"ligand_burial":0.928,"tm_score":0.798,"rg_apo":18.72,"rg_holo":18.9,"rg_delta":0.18,"bp_rewire_src":"dssr","bp_formed":2,"bp_broken":7,"bp_conserved":27,"bp_formed_wc":1,"bp_broken_wc":4,"bp_conserved_wc":19,"maxd":6.3,"water":1,"hbonds":1,"mw":135.1,"logp":-0.06,"thumb_img":true,"thumb_v":1785389623,"apo_alts":[],"n_apo_copies":2},{"id":"5SWE_ADE_X_B_101_pocket","title":"5SWE (ADE) vs 5E54 (apo)","struct_title":"Ligand-bound structure of adenine riboswitch aptamer domain converted in crystal from its ligand-free state using ligand mixing serial femtosecond crystallography","holo_pdb":"5SWE","ligand":"ADE","holo_chain":"X","holo_rna_chain":"X","lig_auth_chain":"X","nearest_rna_chain":"X","lig_resseq":"101","apo_pdb":"5E54","apo_chain":"B","holo_len":71,"apo_len":68,"pocket_size":16,"thumb":{"holo":[[0.064,0.286],[0.111,0.369],[0.143,0.434],[0.168,0.457],[0.182,0.446],[0.199,0.39],[0.219,0.316],[0.264,0.24],[0.332,0.195],[0.42,0.221],[0.481,0.266],[0.476,0.293],[0.536,0.233],[0.589,0.174],[0.644,0.109],[0.703,0.064],[0.757,0.035],[0.799,0.065],[0.826,0.135],[0.868,0.215],[0.892,0.297],[0.927,0.359],[0.907,0.474],[0.891,0.48],[0.877,0.389],[0.812,0.348],[0.795,0.267],[0.76,0.2],[0.711,0.121],[0.679,0.043],[0.637,0.016],[0.591,0.026],[0.54,0.061],[0.479,0.115],[0.366,0.12],[0.258,0.053],[0.299,0.101],[0.306,0.094],[0.371,0.137],[0.43,0.195],[0.499,0.21],[0.542,0.29],[0.56,0.373],[0.588,0.451],[0.629,0.501],[0.684,0.515],[0.735,0.489],[0.805,0.449],[0.878,0.408],[0.975,0.478],[1.0,0.391],[0.981,0.326],[0.91,0.267],[0.85,0.281],[0.785,0.331],[0.719,0.382],[0.651,0.427],[0.586,0.471],[0.521,0.48],[0.467,0.44],[0.417,0.36],[0.375,0.294],[0.326,0.219],[0.267,0.175],[0.201,0.183],[0.147,0.231],[0.097,0.308],[0.07,0.382],[0.057,0.448],[0.042,0.479],[0.022,0.47]],"apo":[[0.0,0.308],[0.056,0.379],[0.11,0.444],[0.168,0.49],[0.22,0.502],[0.248,0.448],[0.266,0.371],[0.283,0.282],[0.31,0.209],[0.44,0.194],[0.466,0.271],[0.466,0.264],[0.517,0.207],[0.578,0.155],[0.646,0.098],[0.714,0.063],[0.779,0.046],[0.823,0.067],[0.844,0.135],[0.868,0.217],[0.885,0.303],[0.915,0.365],[0.883,0.475],[0.879,0.484],[0.862,0.383],[0.805,0.344],[0.798,0.258],[0.772,0.18],[0.735,0.107],[0.712,0.034],[0.671,0.0],[0.614,0.004],[0.547,0.043],[0.474,0.086],[0.397,0.102],[0.315,0.184],[0.385,0.175],[0.422,0.059],[0.476,0.063],[0.462,0.142],[0.508,0.183],[0.53,0.279],[0.555,0.361],[0.579,0.437],[0.611,0.49],[0.655,0.508],[0.715,0.484],[0.784,0.443],[0.86,0.41],[0.968,0.476],[0.991,0.396],[0.961,0.326],[0.9,0.266],[0.838,0.282],[0.768,0.328],[0.696,0.378],[0.623,0.42],[0.559,0.454],[0.505,0.456],[0.457,0.421],[0.397,0.336],[0.333,0.268],[0.27,0.227],[0.216,0.21],[0.171,0.241]]},"method":"X-ray","resolution":3.0,"rna_type":"Purine-compound riboswitch","rna_group":"Riboswitch","num_chains":1,"total_rna_len":71,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["junction","hairpin loop","stem"],"rmsd":4.35,"host_chain_rmsd":4.35,"pocket_rmsd":5.97,"lig_bsa":255.6,"ligand_burial":0.974,"tm_score":0.624,"rg_apo":19.33,"rg_holo":19.55,"rg_delta":0.22,"bp_rewire_src":"dssr","bp_formed":8,"bp_broken":6,"bp_conserved":28,"bp_formed_wc":4,"bp_broken_wc":2,"bp_conserved_wc":21,"maxd":10.8,"water":0,"hbonds":3,"mw":135.1,"logp":-0.06,"thumb_img":true,"thumb_v":1785389623,"apo_alts":[],"n_apo_copies":2},{"id":"5UZA_ADE_X_B_101_pocket","title":"5UZA (ADE) vs 5E54 (apo)","struct_title":"Adenine riboswitch aptamer domain labelled with iodo-uridine by position-selective labelling of RNA (PLOR)","holo_pdb":"5UZA","ligand":"ADE","holo_chain":"X","holo_rna_chain":"X","lig_auth_chain":"X","nearest_rna_chain":"X","lig_resseq":"101","apo_pdb":"5E54","apo_chain":"B","holo_len":71,"apo_len":68,"pocket_size":16,"thumb":{"holo":[[0.049,0.295],[0.097,0.378],[0.131,0.437],[0.152,0.462],[0.161,0.452],[0.174,0.4],[0.191,0.323],[0.239,0.245],[0.315,0.205],[0.406,0.24],[0.471,0.29],[0.466,0.301],[0.524,0.254],[0.582,0.196],[0.641,0.127],[0.698,0.076],[0.757,0.043],[0.802,0.074],[0.827,0.141],[0.86,0.224],[0.891,0.314],[0.927,0.38],[0.897,0.498],[0.889,0.501],[0.873,0.403],[0.809,0.364],[0.797,0.274],[0.759,0.192],[0.712,0.12],[0.68,0.046],[0.635,0.022],[0.588,0.035],[0.538,0.078],[0.47,0.133],[0.354,0.13],[0.26,0.051],[0.29,0.105],[0.295,0.093],[0.354,0.146],[0.417,0.202],[0.492,0.22],[0.527,0.303],[0.548,0.386],[0.578,0.467],[0.619,0.521],[0.669,0.538],[0.722,0.519],[0.791,0.477],[0.871,0.436],[0.978,0.499],[1.0,0.417],[0.973,0.353],[0.908,0.294],[0.841,0.307],[0.774,0.353],[0.705,0.407],[0.635,0.455],[0.569,0.499],[0.506,0.498],[0.452,0.458],[0.397,0.365],[0.362,0.29],[0.314,0.22],[0.254,0.176],[0.176,0.181],[0.115,0.233],[0.075,0.31],[0.046,0.392],[0.037,0.455],[0.029,0.486],[0.01,0.469]],"apo":[[0.0,0.254],[0.06,0.317],[0.106,0.395],[0.153,0.466],[0.191,0.501],[0.216,0.491],[0.241,0.439],[0.27,0.357],[0.322,0.285],[0.457,0.285],[0.369,0.238],[0.451,0.248],[0.508,0.191],[0.581,0.148],[0.657,0.101],[0.726,0.072],[0.792,0.061],[0.832,0.088],[0.847,0.161],[0.864,0.248],[0.877,0.335],[0.901,0.399],[0.862,0.506],[0.853,0.527],[0.845,0.415],[0.792,0.368],[0.783,0.286],[0.76,0.208],[0.738,0.125],[0.718,0.047],[0.685,0.006],[0.631,0.0],[0.563,0.029],[0.482,0.063],[0.401,0.077],[0.283,0.139],[0.37,0.159],[0.413,0.041],[0.461,0.037],[0.453,0.124],[0.5,0.169],[0.518,0.267],[0.54,0.354],[0.559,0.434],[0.586,0.492],[0.627,0.517],[0.688,0.498],[0.761,0.462],[0.842,0.433],[0.946,0.514],[0.976,0.436],[0.953,0.357],[0.897,0.291],[0.831,0.301],[0.755,0.342],[0.68,0.387],[0.603,0.425],[0.534,0.453],[0.479,0.45],[0.435,0.411],[0.379,0.321],[0.326,0.256],[0.273,0.222],[0.226,0.225],[0.178,0.278],[0.14,0.354],[0.108,0.448],[0.071,0.506]]},"method":"X-ray","resolution":2.22,"rna_type":"Purine-compound riboswitch","rna_group":"Riboswitch","num_chains":1,"total_rna_len":69,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["junction","hairpin loop","stem"],"rmsd":4.57,"host_chain_rmsd":4.57,"pocket_rmsd":6.08,"lig_bsa":251.1,"ligand_burial":0.98,"tm_score":0.612,"rg_apo":19.32,"rg_holo":19.56,"rg_delta":0.24,"bp_rewire_src":"dssr","bp_formed":8,"bp_broken":6,"bp_conserved":28,"bp_formed_wc":4,"bp_broken_wc":2,"bp_conserved_wc":21,"maxd":11.3,"water":2,"hbonds":4,"mw":135.1,"logp":-0.06,"thumb_img":true,"thumb_v":1785444677,"apo_alts":[],"n_apo_copies":2},{"id":"5VCF_8OS_A_C_101_pocket","title":"5VCF (8OS) vs 5VGW (apo)","struct_title":"RNA hairpin structure containing tetraloop/receptor motif, complexed with 2-MeImpG analogue","holo_pdb":"5VCF","ligand":"8OS","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"101","apo_pdb":"5VGW","apo_chain":"A","holo_len":22,"apo_len":22,"pocket_size":11,"thumb":{"holo":[[1.0,0.331],[0.996,0.291],[0.958,0.215],[0.919,0.126],[0.863,0.041],[0.787,0.002],[0.716,0.028],[0.642,0.088],[0.571,0.163],[0.487,0.22],[0.471,0.341],[0.457,0.379],[0.42,0.344],[0.371,0.278],[0.306,0.188],[0.207,0.129],[0.121,0.155],[0.0,0.222],[0.043,0.204],[0.089,0.143],[0.169,0.101],[0.242,0.067]],"apo":[[0.985,0.322],[0.997,0.29],[0.965,0.219],[0.913,0.131],[0.855,0.037],[0.78,0.0],[0.707,0.023],[0.636,0.086],[0.567,0.164],[0.486,0.223],[0.467,0.338],[0.46,0.38],[0.43,0.354],[0.371,0.287],[0.306,0.197],[0.214,0.132],[0.127,0.149],[0.0,0.213],[0.047,0.2],[0.093,0.141],[0.176,0.101],[0.251,0.066]]},"method":"X-ray","resolution":2.8,"rna_type":"Self-replicating","rna_group":"Catalytic (ribozyme)","num_chains":2,"total_rna_len":34,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["hairpin loop","bulge","stem","single strand"],"rmsd":0.51,"host_chain_rmsd":0.49,"pocket_rmsd":0.55,"lig_bsa":314.3,"ligand_burial":0.553,"tm_score":0.643,"rg_apo":17.71,"rg_holo":17.87,"rg_delta":0.16,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":1,"bp_conserved":16,"bp_formed_wc":0,"bp_broken_wc":1,"bp_conserved_wc":11,"maxd":1.0,"water":0,"hbonds":3,"mw":427.3,"logp":-2.12,"thumb_img":true,"thumb_v":1785389623,"apo_alts":[],"n_apo_copies":0},{"id":"5VCI_8OS_A_C_101_pocket","title":"5VCI (8OS) vs 5VGW (apo)","struct_title":"RNA hairpin structure containing tetraloop/receptor motif, complexed with 2-MeImpG analogue","holo_pdb":"5VCI","ligand":"8OS","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"101","apo_pdb":"5VGW","apo_chain":"A","holo_len":22,"apo_len":22,"pocket_size":10,"thumb":{"holo":[[0.009,0.33],[0.007,0.292],[0.042,0.221],[0.087,0.123],[0.141,0.038],[0.211,0.002],[0.287,0.025],[0.359,0.088],[0.43,0.165],[0.511,0.224],[0.529,0.341],[0.544,0.379],[0.577,0.34],[0.626,0.277],[0.694,0.195],[0.786,0.131],[0.873,0.154],[0.998,0.217],[0.952,0.204],[0.902,0.144],[0.822,0.104],[0.75,0.068]],"apo":[[0.012,0.324],[0.0,0.292],[0.032,0.22],[0.084,0.132],[0.142,0.037],[0.217,0.0],[0.291,0.024],[0.362,0.086],[0.431,0.165],[0.512,0.224],[0.532,0.339],[0.539,0.382],[0.569,0.355],[0.629,0.287],[0.693,0.197],[0.785,0.131],[0.873,0.148],[1.0,0.212],[0.953,0.2],[0.907,0.141],[0.824,0.101],[0.748,0.066]]},"method":"X-ray","resolution":2.6,"rna_type":"Self-replicating","rna_group":"Catalytic (ribozyme)","num_chains":2,"total_rna_len":34,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["hairpin loop","bulge","stem","single strand"],"rmsd":0.47,"host_chain_rmsd":0.43,"pocket_rmsd":0.61,"lig_bsa":332.5,"ligand_burial":0.595,"tm_score":0.693,"rg_apo":17.71,"rg_holo":17.66,"rg_delta":-0.05,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":1,"bp_conserved":16,"bp_formed_wc":0,"bp_broken_wc":1,"bp_conserved_wc":11,"maxd":1.1,"water":0,"hbonds":2,"mw":427.3,"logp":-2.12,"thumb_img":true,"thumb_v":1785389623,"apo_alts":[],"n_apo_copies":0},{"id":"5XI1_MYC_S_C_101_pocket","title":"5XI1 (MYC) vs 2MS5 (apo)","struct_title":"Structural Insight of Flavonoids binding to CAG repeat RNA that causes Huntington's Disease (HD) and Spinocerebellar Ataxia (SCAs)","holo_pdb":"5XI1","ligand":"MYC","holo_chain":"S","holo_rna_chain":"S","lig_auth_chain":"S","nearest_rna_chain":"A","lig_resseq":"101","apo_pdb":"2MS5","apo_chain":"S","holo_len":9,"apo_len":9,"pocket_size":5,"thumb":{"holo":[[0.0,0.0],[0.031,0.18],[0.127,0.369],[0.292,0.508],[0.488,0.704],[0.697,0.505],[0.866,0.367],[0.964,0.182],[0.998,0.023]],"apo":[[0.0,0.018],[0.034,0.197],[0.132,0.382],[0.297,0.524],[0.471,0.593],[0.697,0.52],[0.866,0.376],[0.966,0.195],[1.0,0.033]]},"method":"NMR","resolution":null,"rna_type":"Other","rna_group":"Other","num_chains":2,"total_rna_len":18,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["stem"],"rmsd":0.87,"host_chain_rmsd":1.03,"pocket_rmsd":0.51,"lig_bsa":193.5,"ligand_burial":0.416,"tm_score":0.797,"rg_apo":10.92,"rg_holo":11.21,"rg_delta":0.29,"bp_rewire_src":"dssr","bp_formed":1,"bp_broken":1,"bp_conserved":8,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":8,"maxd":2.9,"water":0,"hbonds":1,"mw":318.2,"logp":1.69,"thumb_img":true,"thumb_v":1785488733,"apo_alts":[{"pdb":"2L8C","rmsd":1.53,"host_chain_rmsd":1.53,"apo_chain":"A","apo_len":9,"identity":null,"global_identity":89,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.183,"rg_delta":-0.48,"pocket_rmsd":1.36,"maxd":6.0,"bp_formed":1,"bp_broken":1,"bp_conserved":8},{"pdb":"2L8U","rmsd":1.05,"host_chain_rmsd":1.05,"apo_chain":"A","apo_len":9,"identity":null,"global_identity":89,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.261,"rg_delta":-0.06,"pocket_rmsd":1.16,"maxd":4.7,"bp_formed":1,"bp_broken":1,"bp_conserved":8},{"pdb":"2L8W","rmsd":1.35,"host_chain_rmsd":1.35,"apo_chain":"A","apo_len":9,"identity":null,"global_identity":89,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.208,"rg_delta":-1.01,"pocket_rmsd":1.35,"maxd":4.8,"bp_formed":1,"bp_broken":1,"bp_conserved":8}],"n_apo_copies":0},{"id":"5XI1_MYC_S_D_102_pocket","title":"5XI1 (MYC) vs 2MS5 (apo)","struct_title":"Structural Insight of Flavonoids binding to CAG repeat RNA that causes Huntington's Disease (HD) and Spinocerebellar Ataxia (SCAs)","holo_pdb":"5XI1","ligand":"MYC","holo_chain":"S","holo_rna_chain":"S","lig_auth_chain":"S","nearest_rna_chain":"S","lig_resseq":"102","apo_pdb":"2MS5","apo_chain":"S","holo_len":9,"apo_len":9,"pocket_size":11,"thumb":{"holo":[[0.0,0.0],[0.031,0.18],[0.127,0.369],[0.292,0.508],[0.488,0.704],[0.697,0.505],[0.866,0.367],[0.964,0.182],[0.998,0.023]],"apo":[[0.0,0.018],[0.034,0.197],[0.132,0.382],[0.297,0.524],[0.471,0.593],[0.697,0.52],[0.866,0.376],[0.966,0.195],[1.0,0.033]]},"method":"NMR","resolution":null,"rna_type":"Other","rna_group":"Other","num_chains":2,"total_rna_len":18,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["internal loop","stem"],"rmsd":0.87,"host_chain_rmsd":1.03,"pocket_rmsd":1.06,"lig_bsa":313.0,"ligand_burial":0.645,"tm_score":0.797,"rg_apo":10.92,"rg_holo":11.21,"rg_delta":0.29,"bp_rewire_src":"dssr","bp_formed":1,"bp_broken":1,"bp_conserved":8,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":8,"maxd":2.9,"water":0,"hbonds":4,"mw":318.2,"logp":1.69,"thumb_img":true,"thumb_v":1785389623,"apo_alts":[],"n_apo_copies":0},{"id":"5XZ1_GET_A_E_101_pocket","title":"5XZ1 (GET) vs 2O3Y (apo)","struct_title":"Crystal structure of the Homo Sapiens cytoplasmic ribosomal decoding site in complex with G418","holo_pdb":"5XZ1","ligand":"GET","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"101","apo_pdb":"2O3Y","apo_chain":"B","holo_len":22,"apo_len":21,"pocket_size":16,"thumb":{"holo":[[0.0,0.325],[0.057,0.241],[0.12,0.175],[0.199,0.134],[0.266,0.135],[0.319,0.199],[0.359,0.279],[0.414,0.365],[0.462,0.407],[0.496,0.399],[0.522,0.355],[0.551,0.278],[0.586,0.192],[0.622,0.112],[0.67,0.08],[0.803,0.0],[0.845,0.034],[0.805,0.17],[0.836,0.266],[0.879,0.334],[0.921,0.395],[0.977,0.39]],"apo":[[0.032,0.284],[0.08,0.196],[0.148,0.146],[0.229,0.149],[0.307,0.176],[0.356,0.252],[0.396,0.34],[0.43,0.392],[0.46,0.38],[0.492,0.335],[0.54,0.262],[0.587,0.185],[0.646,0.128],[0.711,0.098],[0.862,0.078],[0.875,0.04],[0.815,0.176],[0.863,0.269],[0.918,0.333],[0.96,0.366],[1.0,0.355]]},"method":"X-ray","resolution":3.008,"rna_type":"Ribosomal RNA","rna_group":"Protein synthesis","num_chains":2,"total_rna_len":88,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":96,"pocket_motifs":["internal loop","stem"],"rmsd":3.22,"host_chain_rmsd":2.66,"pocket_rmsd":2.76,"lig_bsa":448.9,"ligand_burial":0.687,"tm_score":0.277,"rg_apo":18.93,"rg_holo":17.91,"rg_delta":-1.02,"bp_rewire_src":"dssr","bp_formed":1,"bp_broken":2,"bp_conserved":17,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":14,"maxd":10.4,"water":0,"hbonds":7,"mw":496.6,"logp":-5.61,"thumb_img":true,"thumb_v":1785389623,"apo_alts":[{"pdb":"2FQN","rmsd":2.6,"host_chain_rmsd":2.6,"apo_chain":"B","apo_len":21,"identity":100,"global_identity":96,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.244,"rg_delta":-0.81,"pocket_rmsd":2.7,"maxd":9.8,"bp_formed":1,"bp_broken":2,"bp_conserved":17}],"n_apo_copies":0},{"id":"5XZ1_GET_B_F_301_pocket","title":"5XZ1 (GET) vs 2O3Y (apo)","struct_title":"Crystal structure of the Homo Sapiens cytoplasmic ribosomal decoding site in complex with G418","holo_pdb":"5XZ1","ligand":"GET","holo_chain":"B","holo_rna_chain":"B","lig_auth_chain":"B","nearest_rna_chain":"A","lig_resseq":"301","apo_pdb":"2O3Y","apo_chain":"B","holo_len":22,"apo_len":21,"pocket_size":17,"thumb":{"holo":[[0.0,0.395],[0.022,0.243],[0.094,0.175],[0.166,0.143],[0.245,0.133],[0.311,0.178],[0.359,0.259],[0.403,0.342],[0.449,0.402],[0.486,0.409],[0.519,0.375],[0.553,0.305],[0.588,0.214],[0.623,0.135],[0.673,0.088],[0.811,0.0],[0.863,0.042],[0.829,0.157],[0.846,0.261],[0.882,0.346],[0.919,0.392],[0.969,0.409]],"apo":[[0.019,0.283],[0.069,0.194],[0.139,0.141],[0.221,0.139],[0.3,0.163],[0.349,0.24],[0.389,0.332],[0.421,0.393],[0.452,0.389],[0.484,0.353],[0.534,0.284],[0.583,0.206],[0.644,0.143],[0.71,0.108],[0.864,0.088],[0.878,0.04],[0.816,0.17],[0.863,0.262],[0.918,0.332],[0.96,0.374],[1.0,0.373]]},"method":"X-ray","resolution":3.008,"rna_type":"Ribosomal RNA","rna_group":"Protein synthesis","num_chains":2,"total_rna_len":88,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":96,"pocket_motifs":["internal loop","stem"],"rmsd":2.97,"host_chain_rmsd":2.34,"pocket_rmsd":2.51,"lig_bsa":455.6,"ligand_burial":0.712,"tm_score":0.275,"rg_apo":18.93,"rg_holo":18.2,"rg_delta":-0.73,"bp_rewire_src":"dssr","bp_formed":1,"bp_broken":2,"bp_conserved":17,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":14,"maxd":9.9,"water":0,"hbonds":8,"mw":496.6,"logp":-5.61,"thumb_img":true,"thumb_v":1785488733,"apo_alts":[{"pdb":"2FQN","rmsd":2.34,"host_chain_rmsd":2.34,"apo_chain":"B","apo_len":21,"identity":100,"global_identity":96,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.346,"rg_delta":-0.52,"pocket_rmsd":2.48,"maxd":10.1,"bp_formed":1,"bp_broken":2,"bp_conserved":17}],"n_apo_copies":0},{"id":"5XZ1_GET_C_G_101_pocket","title":"5XZ1 (GET) vs 2O3Y (apo)","struct_title":"Crystal structure of the Homo Sapiens cytoplasmic ribosomal decoding site in complex with G418","holo_pdb":"5XZ1","ligand":"GET","holo_chain":"C","holo_rna_chain":"C","lig_auth_chain":"C","nearest_rna_chain":"C","lig_resseq":"101","apo_pdb":"2O3Y","apo_chain":"B","holo_len":22,"apo_len":21,"pocket_size":17,"thumb":{"holo":[[0.075,0.35],[0.01,0.241],[0.083,0.177],[0.161,0.14],[0.237,0.147],[0.289,0.208],[0.332,0.292],[0.386,0.375],[0.438,0.419],[0.478,0.394],[0.507,0.355],[0.541,0.275],[0.578,0.189],[0.618,0.117],[0.666,0.078],[0.796,0.0],[0.863,0.047],[0.812,0.17],[0.833,0.278],[0.879,0.354],[0.923,0.394],[0.969,0.392]],"apo":[[0.0,0.288],[0.05,0.197],[0.12,0.148],[0.203,0.153],[0.283,0.183],[0.334,0.262],[0.375,0.352],[0.41,0.402],[0.442,0.386],[0.476,0.336],[0.526,0.26],[0.575,0.181],[0.636,0.124],[0.702,0.097],[0.858,0.077],[0.871,0.042],[0.808,0.186],[0.857,0.282],[0.914,0.346],[0.958,0.377],[1.0,0.362]]},"method":"X-ray","resolution":3.008,"rna_type":"Ribosomal RNA","rna_group":"Protein synthesis","num_chains":2,"total_rna_len":88,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":96,"pocket_motifs":["internal loop","stem","single strand"],"rmsd":3.07,"host_chain_rmsd":2.42,"pocket_rmsd":3.89,"lig_bsa":511.7,"ligand_burial":0.767,"tm_score":0.284,"rg_apo":18.93,"rg_holo":18.11,"rg_delta":-0.82,"bp_rewire_src":"dssr","bp_formed":1,"bp_broken":2,"bp_conserved":17,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":14,"maxd":10.2,"water":0,"hbonds":9,"mw":496.6,"logp":-5.61,"thumb_img":true,"thumb_v":1785389623,"apo_alts":[{"pdb":"2FQN","rmsd":2.39,"host_chain_rmsd":2.39,"apo_chain":"B","apo_len":21,"identity":100,"global_identity":96,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.231,"rg_delta":-0.61,"pocket_rmsd":3.71,"maxd":9.5,"bp_formed":1,"bp_broken":2,"bp_conserved":17}],"n_apo_copies":0},{"id":"5XZ1_GET_C_H_102_pocket","title":"5XZ1 (GET) vs 2O3Y (apo)","struct_title":"Crystal structure of the Homo Sapiens cytoplasmic ribosomal decoding site in complex with G418","holo_pdb":"5XZ1","ligand":"GET","holo_chain":"C","holo_rna_chain":"C","lig_auth_chain":"C","nearest_rna_chain":"C","lig_resseq":"102","apo_pdb":"2O3Y","apo_chain":"B","holo_len":22,"apo_len":21,"pocket_size":18,"thumb":{"holo":[[0.075,0.35],[0.01,0.241],[0.083,0.177],[0.161,0.14],[0.237,0.147],[0.289,0.208],[0.332,0.292],[0.386,0.375],[0.438,0.419],[0.478,0.394],[0.507,0.355],[0.541,0.275],[0.578,0.189],[0.618,0.117],[0.666,0.078],[0.796,0.0],[0.863,0.047],[0.812,0.17],[0.833,0.278],[0.879,0.354],[0.923,0.394],[0.969,0.392]],"apo":[[0.0,0.288],[0.05,0.197],[0.12,0.148],[0.203,0.153],[0.283,0.183],[0.334,0.262],[0.375,0.352],[0.41,0.402],[0.442,0.386],[0.476,0.336],[0.526,0.26],[0.575,0.181],[0.636,0.124],[0.702,0.097],[0.858,0.077],[0.871,0.042],[0.808,0.186],[0.857,0.282],[0.914,0.346],[0.958,0.377],[1.0,0.362]]},"method":"X-ray","resolution":3.008,"rna_type":"Ribosomal RNA","rna_group":"Protein synthesis","num_chains":2,"total_rna_len":88,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":96,"pocket_motifs":["internal loop","stem"],"rmsd":3.07,"host_chain_rmsd":2.42,"pocket_rmsd":2.64,"lig_bsa":486.2,"ligand_burial":0.716,"tm_score":0.284,"rg_apo":18.93,"rg_holo":18.11,"rg_delta":-0.82,"bp_rewire_src":"dssr","bp_formed":1,"bp_broken":2,"bp_conserved":17,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":14,"maxd":10.2,"water":0,"hbonds":8,"mw":496.6,"logp":-5.61,"thumb_img":true,"thumb_v":1785389623,"apo_alts":[{"pdb":"2FQN","rmsd":2.39,"host_chain_rmsd":2.39,"apo_chain":"B","apo_len":21,"identity":100,"global_identity":96,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.231,"rg_delta":-0.61,"pocket_rmsd":2.65,"maxd":9.5,"bp_formed":1,"bp_broken":2,"bp_conserved":17}],"n_apo_copies":0},{"id":"5Z1I_FSJ_A_B_301_pocket","title":"5Z1I (FSJ) vs 7EDN (apo)","struct_title":"Crystal structure of the protozoal cytoplasmic ribosomal decoding site in complex with 6'-fluoro sisomicin","holo_pdb":"5Z1I","ligand":"FSJ","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"B","lig_resseq":"301","apo_pdb":"7EDN","apo_chain":"A","holo_len":21,"apo_len":22,"pocket_size":16,"thumb":{"holo":[[0.0,0.256],[0.054,0.178],[0.119,0.136],[0.186,0.134],[0.247,0.187],[0.306,0.265],[0.362,0.347],[0.414,0.396],[0.462,0.408],[0.502,0.375],[0.534,0.305],[0.559,0.216],[0.595,0.141],[0.656,0.1],[0.789,0.0],[0.805,0.032],[0.769,0.162],[0.822,0.26],[0.889,0.326],[0.945,0.377],[1.0,0.386]],"apo":[[0.006,0.402],[0.035,0.301],[0.07,0.215],[0.124,0.16],[0.189,0.135],[0.262,0.155],[0.329,0.215],[0.365,0.3],[0.401,0.364],[0.439,0.38],[0.483,0.361],[0.519,0.291],[0.565,0.212],[0.615,0.147],[0.674,0.109],[0.74,0.105],[0.833,0.04],[0.773,0.17],[0.814,0.27],[0.869,0.335],[0.927,0.357],[0.975,0.332]]},"method":"X-ray","resolution":1.903,"rna_type":"Ribosomal RNA","rna_group":"Protein synthesis","num_chains":2,"total_rna_len":21,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":90,"global_identity":83,"pocket_motifs":["internal loop","stem"],"rmsd":3.06,"host_chain_rmsd":2.78,"pocket_rmsd":3.2,"lig_bsa":416.2,"ligand_burial":0.675,"tm_score":0.282,"rg_apo":18.53,"rg_holo":19.55,"rg_delta":1.02,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":2,"bp_conserved":18,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":16,"maxd":9.0,"water":4,"hbonds":6,"mw":450.5,"logp":-2.84,"thumb_img":true,"thumb_v":1785488733,"apo_alts":[],"n_apo_copies":0},{"id":"5Z71_GET_B_C_201_pocket","title":"5Z71 (GET) vs 2O3Y (apo)","struct_title":"Crystal structure of the Homo Sapiens cytoplasmic ribosomal decoding site in complex with G418 (P21212 form)","holo_pdb":"5Z71","ligand":"GET","holo_chain":"B","holo_rna_chain":"B","lig_auth_chain":"B","nearest_rna_chain":"A","lig_resseq":"201","apo_pdb":"2O3Y","apo_chain":"B","holo_len":22,"apo_len":21,"pocket_size":16,"thumb":{"holo":[[0.092,0.392],[0.028,0.253],[0.102,0.172],[0.166,0.164],[0.245,0.143],[0.314,0.178],[0.361,0.254],[0.393,0.344],[0.441,0.408],[0.476,0.423],[0.502,0.38],[0.532,0.31],[0.572,0.221],[0.614,0.14],[0.665,0.094],[0.798,0.0],[0.857,0.038],[0.811,0.157],[0.828,0.266],[0.86,0.345],[0.904,0.4],[0.961,0.416]],"apo":[[0.0,0.29],[0.051,0.199],[0.122,0.144],[0.206,0.142],[0.286,0.166],[0.337,0.244],[0.377,0.338],[0.41,0.4],[0.442,0.397],[0.475,0.361],[0.525,0.292],[0.575,0.211],[0.637,0.147],[0.704,0.111],[0.861,0.09],[0.875,0.04],[0.812,0.172],[0.86,0.266],[0.916,0.337],[0.959,0.38],[1.0,0.38]]},"method":"X-ray","resolution":2.5,"rna_type":"Ribosomal RNA","rna_group":"Protein synthesis","num_chains":2,"total_rna_len":41,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":96,"pocket_motifs":["internal loop","stem"],"rmsd":2.8,"host_chain_rmsd":2.79,"pocket_rmsd":2.87,"lig_bsa":462.1,"ligand_burial":0.695,"tm_score":0.273,"rg_apo":18.93,"rg_holo":17.66,"rg_delta":-1.27,"bp_rewire_src":"dssr","bp_formed":1,"bp_broken":3,"bp_conserved":16,"bp_formed_wc":1,"bp_broken_wc":1,"bp_conserved_wc":13,"maxd":6.3,"water":0,"hbonds":8,"mw":496.6,"logp":-5.61,"thumb_img":true,"thumb_v":1785488733,"apo_alts":[{"pdb":"2FQN","rmsd":2.69,"host_chain_rmsd":2.69,"apo_chain":"B","apo_len":21,"identity":100,"global_identity":96,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.303,"rg_delta":-1.06,"pocket_rmsd":2.8,"maxd":6.4,"bp_formed":2,"bp_broken":4,"bp_conserved":15}],"n_apo_copies":0},{"id":"5ZEI_GET_A_C_101_pocket","title":"5ZEI (GET) vs 7EDN (apo)","struct_title":"Crystal structure of the bacterial A1408me1A-mutant ribosomal decoding site in complex with geneticin","holo_pdb":"5ZEI","ligand":"GET","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"101","apo_pdb":"7EDN","apo_chain":"A","holo_len":22,"apo_len":22,"pocket_size":16,"thumb":{"holo":[[0.0,0.333],[0.044,0.24],[0.108,0.167],[0.181,0.127],[0.248,0.126],[0.303,0.185],[0.355,0.261],[0.408,0.342],[0.455,0.383],[0.495,0.386],[0.531,0.344],[0.557,0.268],[0.584,0.173],[0.625,0.1],[0.677,0.06],[0.833,0.0],[0.86,0.031],[0.802,0.152],[0.83,0.258],[0.877,0.329],[0.922,0.389],[0.989,0.39]],"apo":[[0.033,0.363],[0.065,0.262],[0.104,0.179],[0.16,0.128],[0.227,0.111],[0.299,0.136],[0.363,0.2],[0.395,0.285],[0.428,0.346],[0.465,0.359],[0.508,0.337],[0.547,0.266],[0.595,0.188],[0.648,0.128],[0.709,0.096],[0.776,0.098],[0.872,0.039],[0.808,0.17],[0.843,0.272],[0.896,0.336],[0.952,0.356],[1.0,0.328]]},"method":"X-ray","resolution":2.1,"rna_type":"Ribosomal RNA","rna_group":"Protein synthesis","num_chains":2,"total_rna_len":41,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":95,"global_identity":91,"pocket_motifs":["internal loop","stem"],"rmsd":2.87,"host_chain_rmsd":2.69,"pocket_rmsd":2.92,"lig_bsa":463.0,"ligand_burial":0.695,"tm_score":0.281,"rg_apo":18.87,"rg_holo":19.17,"rg_delta":0.3,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":2,"bp_conserved":18,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":16,"maxd":8.1,"water":5,"hbonds":7,"mw":496.6,"logp":-5.61,"thumb_img":true,"thumb_v":1785444678,"apo_alts":[{"pdb":"4P43","rmsd":2.55,"host_chain_rmsd":2.55,"apo_chain":"A","apo_len":21,"identity":95,"global_identity":91,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.309,"rg_delta":0.33,"pocket_rmsd":2.62,"maxd":7.7,"bp_formed":0,"bp_broken":2,"bp_conserved":18}],"n_apo_copies":0},{"id":"5ZEI_GET_B_D_101_pocket","title":"5ZEI (GET) vs 7EDN (apo)","struct_title":"Crystal structure of the bacterial A1408me1A-mutant ribosomal decoding site in complex with geneticin","holo_pdb":"5ZEI","ligand":"GET","holo_chain":"B","holo_rna_chain":"B","lig_auth_chain":"B","nearest_rna_chain":"B","lig_resseq":"101","apo_pdb":"7EDN","apo_chain":"A","holo_len":21,"apo_len":22,"pocket_size":16,"thumb":{"holo":[[0.0,0.271],[0.068,0.195],[0.14,0.152],[0.217,0.133],[0.283,0.181],[0.335,0.255],[0.379,0.347],[0.428,0.418],[0.477,0.442],[0.516,0.403],[0.542,0.331],[0.572,0.241],[0.604,0.162],[0.648,0.097],[0.785,0.0],[0.841,0.032],[0.82,0.147],[0.842,0.25],[0.883,0.34],[0.923,0.405],[0.975,0.416]],"apo":[[0.002,0.415],[0.033,0.314],[0.069,0.225],[0.127,0.164],[0.194,0.133],[0.27,0.149],[0.338,0.208],[0.374,0.299],[0.41,0.37],[0.448,0.395],[0.493,0.383],[0.53,0.317],[0.578,0.238],[0.631,0.169],[0.692,0.125],[0.762,0.115],[0.858,0.044],[0.796,0.171],[0.836,0.274],[0.892,0.345],[0.951,0.375],[1.0,0.357]]},"method":"X-ray","resolution":2.1,"rna_type":"Ribosomal RNA","rna_group":"Protein synthesis","num_chains":2,"total_rna_len":41,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":95,"global_identity":87,"pocket_motifs":["internal loop","stem"],"rmsd":2.9,"host_chain_rmsd":2.63,"pocket_rmsd":2.93,"lig_bsa":476.7,"ligand_burial":0.705,"tm_score":0.28,"rg_apo":18.06,"rg_holo":18.36,"rg_delta":0.3,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":2,"bp_conserved":18,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":16,"maxd":7.5,"water":4,"hbonds":7,"mw":496.6,"logp":-5.61,"thumb_img":true,"thumb_v":1785444678,"apo_alts":[{"pdb":"4P43","rmsd":2.51,"host_chain_rmsd":2.51,"apo_chain":"A","apo_len":21,"identity":95,"global_identity":87,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.306,"rg_delta":0.42,"pocket_rmsd":2.44,"maxd":8.2,"bp_formed":0,"bp_broken":2,"bp_conserved":18}],"n_apo_copies":0},{"id":"5ZEJ_PAR_B_C_101_pocket","title":"5ZEJ (PAR) vs 7EDN (apo)","struct_title":"Crystal structure of the bacterial A1408me1A-mutant ribosomal decoding site in complex with paromomycin","holo_pdb":"5ZEJ","ligand":"PAR","holo_chain":"B","holo_rna_chain":"B","lig_auth_chain":"B","nearest_rna_chain":"B","lig_resseq":"101","apo_pdb":"7EDN","apo_chain":"B","holo_len":22,"apo_len":22,"pocket_size":19,"thumb":{"holo":[[0.0,0.359],[0.03,0.268],[0.092,0.198],[0.165,0.157],[0.24,0.127],[0.308,0.157],[0.358,0.233],[0.396,0.313],[0.437,0.394],[0.483,0.42],[0.522,0.396],[0.547,0.33],[0.579,0.243],[0.621,0.164],[0.665,0.101],[0.787,0.0],[0.844,0.036],[0.809,0.149],[0.836,0.253],[0.875,0.341],[0.918,0.398],[0.978,0.415]],"apo":[[0.014,0.393],[0.046,0.295],[0.085,0.209],[0.143,0.148],[0.211,0.117],[0.285,0.131],[0.351,0.19],[0.384,0.281],[0.417,0.354],[0.455,0.383],[0.499,0.376],[0.537,0.314],[0.586,0.239],[0.64,0.172],[0.702,0.126],[0.771,0.115],[0.868,0.047],[0.804,0.167],[0.841,0.269],[0.894,0.342],[0.951,0.375],[1.0,0.363]]},"method":"X-ray","resolution":3.5,"rna_type":"Ribosomal RNA","rna_group":"Protein synthesis","num_chains":2,"total_rna_len":42,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":95,"global_identity":91,"pocket_motifs":["internal loop","stem"],"rmsd":2.66,"host_chain_rmsd":2.48,"pocket_rmsd":2.75,"lig_bsa":433.9,"ligand_burial":0.561,"tm_score":0.294,"rg_apo":18.87,"rg_holo":18.89,"rg_delta":0.02,"bp_rewire_src":"dssr","bp_formed":1,"bp_broken":2,"bp_conserved":18,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":16,"maxd":6.9,"water":0,"hbonds":9,"mw":615.6,"logp":-8.86,"thumb_img":true,"thumb_v":1785444679,"apo_alts":[{"pdb":"4P43","rmsd":2.34,"host_chain_rmsd":2.34,"apo_chain":"A","apo_len":21,"identity":95,"global_identity":91,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.301,"rg_delta":0.12,"pocket_rmsd":2.21,"maxd":7.1,"bp_formed":1,"bp_broken":2,"bp_conserved":18}],"n_apo_copies":0},{"id":"6E1S_HLV_A_B_101_pocket","title":"6E1S (HLV) vs 3Q51 (apo)","struct_title":"Crystal structure of a class I PreQ1 riboswitch complexed with a synthetic compound 1: 2-[(dibenzo[b,d]furan-2-yl)oxy]ethan-1-amine","holo_pdb":"6E1S","ligand":"HLV","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"101","apo_pdb":"3Q51","apo_chain":"A","holo_len":32,"apo_len":32,"pocket_size":17,"thumb":{"holo":[[0.704,0.584],[0.737,0.512],[0.73,0.4],[0.666,0.294],[0.563,0.194],[0.478,0.06],[0.351,0.086],[0.235,0.162],[0.094,0.212],[0.146,0.313],[0.308,0.364],[0.337,0.578],[0.389,0.52],[0.342,0.424],[0.406,0.25],[0.531,0.182],[0.663,0.184],[0.769,0.253],[0.862,0.372],[0.908,0.456],[1.0,0.298],[0.829,0.338],[0.828,0.117],[0.755,0.0],[0.638,0.001],[0.512,0.01],[0.368,0.024],[0.298,0.091],[0.232,0.205],[0.159,0.322],[0.069,0.45],[0.0,0.418]],"apo":[[0.709,0.585],[0.739,0.512],[0.725,0.401],[0.653,0.3],[0.551,0.206],[0.471,0.065],[0.351,0.084],[0.237,0.154],[0.097,0.204],[0.155,0.302],[0.326,0.355],[0.305,0.526],[0.371,0.383],[0.366,0.44],[0.408,0.256],[0.533,0.182],[0.663,0.181],[0.766,0.252],[0.86,0.366],[0.9,0.456],[0.987,0.304],[0.823,0.338],[0.82,0.115],[0.747,0.003],[0.631,0.001],[0.507,0.011],[0.377,0.026],[0.296,0.098],[0.237,0.222],[0.177,0.331],[0.085,0.452],[0.017,0.424]]},"method":"X-ray","resolution":1.8,"rna_type":"Purine-compound riboswitch","rna_group":"Riboswitch","num_chains":1,"total_rna_len":31,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":94,"global_identity":94,"pocket_motifs":["internal loop","stem","single strand"],"rmsd":0.87,"host_chain_rmsd":0.87,"pocket_rmsd":1.12,"lig_bsa":309.2,"ligand_burial":0.792,"tm_score":0.67,"rg_apo":13.08,"rg_holo":13.27,"rg_delta":0.19,"bp_rewire_src":"dssr","bp_formed":1,"bp_broken":2,"bp_conserved":16,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":7,"maxd":3.0,"water":1,"hbonds":1,"mw":227.3,"logp":2.92,"thumb_img":true,"thumb_v":1785444679,"apo_alts":[],"n_apo_copies":0},{"id":"6E1T_HLV_A_C_102_pocket","title":"6E1T (HLV) vs 3Q51 (apo)","struct_title":"Crystal structure of a class I PreQ1 riboswitch complexed with a synthetic compound 1: 2-[(dibenzo[b,d]furan-2-yl)oxy]ethan-1-amine","holo_pdb":"6E1T","ligand":"HLV","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"102","apo_pdb":"3Q51","apo_chain":"A","holo_len":33,"apo_len":32,"pocket_size":17,"thumb":{"holo":[[0.7,0.579],[0.736,0.512],[0.729,0.4],[0.667,0.293],[0.563,0.194],[0.477,0.059],[0.35,0.087],[0.234,0.166],[0.094,0.218],[0.146,0.319],[0.307,0.366],[0.339,0.581],[0.532,0.507],[0.341,0.429],[0.34,0.396],[0.406,0.249],[0.532,0.18],[0.663,0.181],[0.769,0.25],[0.862,0.37],[0.907,0.458],[1.0,0.302],[0.829,0.337],[0.829,0.116],[0.757,0.0],[0.639,0.0],[0.514,0.009],[0.37,0.022],[0.299,0.09],[0.231,0.201],[0.159,0.321],[0.069,0.45],[0.0,0.42]],"apo":[[0.712,0.582],[0.741,0.511],[0.726,0.402],[0.654,0.303],[0.552,0.208],[0.471,0.067],[0.351,0.086],[0.236,0.158],[0.096,0.211],[0.155,0.308],[0.326,0.359],[0.306,0.529],[0.372,0.383],[0.368,0.436],[0.409,0.252],[0.535,0.179],[0.664,0.179],[0.768,0.25],[0.862,0.364],[0.902,0.457],[0.988,0.307],[0.824,0.339],[0.821,0.116],[0.747,0.003],[0.631,0.0],[0.507,0.01],[0.377,0.023],[0.296,0.095],[0.237,0.22],[0.178,0.331],[0.086,0.453],[0.017,0.428]]},"method":"X-ray","resolution":1.8,"rna_type":"Purine-compound riboswitch","rna_group":"Riboswitch","num_chains":1,"total_rna_len":30,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":91,"global_identity":91,"pocket_motifs":["internal loop","hairpin loop","stem"],"rmsd":0.79,"host_chain_rmsd":0.79,"pocket_rmsd":1.02,"lig_bsa":325.5,"ligand_burial":0.823,"tm_score":0.685,"rg_apo":13.12,"rg_holo":13.32,"rg_delta":0.2,"bp_rewire_src":"dssr","bp_formed":1,"bp_broken":2,"bp_conserved":16,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":7,"maxd":2.9,"water":1,"hbonds":1,"mw":227.3,"logp":2.92,"thumb_img":true,"thumb_v":1785444680,"apo_alts":[],"n_apo_copies":0},{"id":"6E1U_HMJ_A_B_101_pocket","title":"6E1U (HMJ) vs 3Q51 (apo)","struct_title":"Crystal structure of a class I PreQ1 riboswitch complexed with a synthetic compound 2: 2-[(dibenzo[b,d]furan-2-yl)oxy]-N,N-dimethylethan-1-amine","holo_pdb":"6E1U","ligand":"HMJ","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"101","apo_pdb":"3Q51","apo_chain":"A","holo_len":32,"apo_len":32,"pocket_size":18,"thumb":{"holo":[[0.708,0.584],[0.737,0.513],[0.729,0.4],[0.664,0.295],[0.562,0.194],[0.478,0.059],[0.352,0.084],[0.237,0.16],[0.095,0.213],[0.149,0.313],[0.312,0.365],[0.341,0.579],[0.387,0.521],[0.352,0.421],[0.405,0.25],[0.532,0.183],[0.664,0.186],[0.771,0.254],[0.863,0.372],[0.908,0.457],[1.0,0.3],[0.83,0.338],[0.828,0.117],[0.757,0.001],[0.637,0.0],[0.513,0.007],[0.37,0.023],[0.296,0.092],[0.232,0.207],[0.161,0.325],[0.07,0.454],[0.0,0.422]],"apo":[[0.711,0.586],[0.741,0.513],[0.727,0.401],[0.655,0.301],[0.552,0.206],[0.472,0.065],[0.352,0.084],[0.237,0.155],[0.096,0.205],[0.155,0.304],[0.327,0.357],[0.305,0.528],[0.372,0.384],[0.367,0.441],[0.409,0.256],[0.535,0.182],[0.665,0.181],[0.769,0.252],[0.863,0.367],[0.903,0.457],[0.99,0.304],[0.825,0.339],[0.822,0.115],[0.748,0.002],[0.632,0.0],[0.508,0.011],[0.377,0.025],[0.296,0.099],[0.237,0.223],[0.177,0.332],[0.085,0.454],[0.017,0.426]]},"method":"X-ray","resolution":1.94,"rna_type":"Purine-compound riboswitch","rna_group":"Riboswitch","num_chains":1,"total_rna_len":31,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":94,"global_identity":94,"pocket_motifs":["internal loop","stem","single strand"],"rmsd":0.83,"host_chain_rmsd":0.83,"pocket_rmsd":1.05,"lig_bsa":364.3,"ligand_burial":0.783,"tm_score":0.691,"rg_apo":13.08,"rg_holo":13.23,"rg_delta":0.15,"bp_rewire_src":"dssr","bp_formed":1,"bp_broken":2,"bp_conserved":16,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":7,"maxd":3.0,"water":0,"hbonds":2,"mw":255.3,"logp":3.53,"thumb_img":true,"thumb_v":1785444680,"apo_alts":[],"n_apo_copies":0},{"id":"6E1V_HMV_A_B_101_pocket","title":"6E1V (HMV) vs 3Q51 (apo)","struct_title":"Crystal structure of a class I PreQ1 riboswitch complexed with a synthetic compound 3: 2-[(9H-carbazol-3-yl)oxy]-N,N-dimethylethan-1-amine","holo_pdb":"6E1V","ligand":"HMV","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"101","apo_pdb":"3Q51","apo_chain":"A","holo_len":33,"apo_len":32,"pocket_size":17,"thumb":{"holo":[[0.707,0.586],[0.737,0.517],[0.726,0.408],[0.661,0.303],[0.556,0.206],[0.474,0.064],[0.344,0.094],[0.23,0.16],[0.086,0.217],[0.139,0.313],[0.309,0.373],[0.331,0.606],[0.522,0.509],[0.333,0.455],[0.343,0.413],[0.401,0.257],[0.527,0.182],[0.662,0.184],[0.771,0.254],[0.863,0.374],[0.907,0.466],[1.0,0.306],[0.828,0.345],[0.827,0.122],[0.755,0.003],[0.637,0.0],[0.514,0.007],[0.368,0.025],[0.296,0.093],[0.227,0.209],[0.151,0.331],[0.067,0.46],[0.0,0.425]],"apo":[[0.713,0.594],[0.743,0.521],[0.728,0.41],[0.654,0.308],[0.55,0.212],[0.468,0.068],[0.346,0.088],[0.229,0.161],[0.086,0.214],[0.146,0.313],[0.321,0.365],[0.3,0.538],[0.367,0.391],[0.363,0.446],[0.405,0.259],[0.533,0.184],[0.664,0.184],[0.77,0.256],[0.866,0.372],[0.906,0.466],[0.994,0.312],[0.828,0.345],[0.824,0.118],[0.748,0.004],[0.631,0.001],[0.504,0.011],[0.373,0.025],[0.29,0.099],[0.23,0.226],[0.169,0.338],[0.076,0.463],[0.006,0.436]]},"method":"X-ray","resolution":2.56,"rna_type":"Purine-compound riboswitch","rna_group":"Riboswitch","num_chains":1,"total_rna_len":30,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":91,"global_identity":91,"pocket_motifs":["internal loop","hairpin loop","stem"],"rmsd":0.74,"host_chain_rmsd":0.74,"pocket_rmsd":1.03,"lig_bsa":396.5,"ligand_burial":0.837,"tm_score":0.762,"rg_apo":13.12,"rg_holo":13.24,"rg_delta":0.12,"bp_rewire_src":"dssr","bp_formed":2,"bp_broken":2,"bp_conserved":16,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":7,"maxd":3.4,"water":0,"hbonds":1,"mw":254.3,"logp":3.26,"thumb_img":true,"thumb_v":1785444681,"apo_alts":[],"n_apo_copies":0},{"id":"6E1W_HNG_A_B_101_pocket","title":"6E1W (HNG) vs 3Q51 (apo)","struct_title":"Crystal structure of a class I PreQ1 riboswitch complexed with PreQ1","holo_pdb":"6E1W","ligand":"HNG","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"101","apo_pdb":"3Q51","apo_chain":"A","holo_len":32,"apo_len":32,"pocket_size":16,"thumb":{"holo":[[0.706,0.603],[0.746,0.526],[0.74,0.409],[0.669,0.295],[0.559,0.199],[0.473,0.056],[0.342,0.082],[0.23,0.16],[0.079,0.218],[0.144,0.319],[0.322,0.366],[0.305,0.507],[0.274,0.567],[0.303,0.396],[0.395,0.267],[0.524,0.201],[0.661,0.2],[0.78,0.264],[0.87,0.384],[0.927,0.459],[0.965,0.328],[0.855,0.35],[0.838,0.122],[0.76,0.01],[0.636,0.008],[0.509,0.014],[0.363,0.034],[0.289,0.105],[0.228,0.228],[0.131,0.318],[0.08,0.468],[0.021,0.46]],"apo":[[0.711,0.604],[0.742,0.527],[0.729,0.412],[0.656,0.308],[0.551,0.21],[0.47,0.064],[0.346,0.083],[0.228,0.155],[0.084,0.204],[0.143,0.306],[0.318,0.363],[0.295,0.538],[0.364,0.393],[0.358,0.453],[0.402,0.263],[0.532,0.187],[0.666,0.187],[0.772,0.261],[0.868,0.378],[0.909,0.47],[1.0,0.313],[0.83,0.349],[0.828,0.119],[0.753,0.003],[0.634,0.0],[0.506,0.011],[0.372,0.026],[0.288,0.101],[0.226,0.228],[0.164,0.338],[0.07,0.462],[0.0,0.432]]},"method":"X-ray","resolution":1.69,"rna_type":"Purine-compound riboswitch","rna_group":"Riboswitch","num_chains":1,"total_rna_len":31,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":94,"global_identity":94,"pocket_motifs":["internal loop","stem","single strand"],"rmsd":1.18,"host_chain_rmsd":1.18,"pocket_rmsd":1.29,"lig_bsa":274.4,"ligand_burial":0.879,"tm_score":0.592,"rg_apo":13.08,"rg_holo":13.02,"rg_delta":-0.06,"bp_rewire_src":"dssr","bp_formed":4,"bp_broken":2,"bp_conserved":16,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":7,"maxd":3.9,"water":2,"hbonds":5,"mw":179.2,"logp":-0.71,"thumb_img":true,"thumb_v":1785444681,"apo_alts":[],"n_apo_copies":0},{"id":"6E81_TFX_A_B_101_pocket","title":"6E81 (TFX) vs 6E80 (apo)","struct_title":"Crystal structure of the Corn aptamer in complex with ThT","holo_pdb":"6E81","ligand":"TFX","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"101","apo_pdb":"6E80","apo_chain":"A","holo_len":36,"apo_len":35,"pocket_size":23,"thumb":{"holo":[[0.207,0.466],[0.177,0.474],[0.168,0.391],[0.177,0.284],[0.21,0.169],[0.257,0.075],[0.349,0.047],[0.486,0.063],[0.638,0.05],[0.733,0.091],[0.856,0.08],[0.706,0.146],[0.59,0.165],[0.465,0.189],[0.566,0.36],[0.583,0.43],[0.599,0.382],[0.569,0.273],[0.719,0.306],[0.65,0.385],[0.692,0.445],[0.767,0.495],[0.832,0.404],[1.0,0.413],[0.91,0.255],[0.84,0.147],[0.74,0.138],[0.691,0.156],[0.573,0.085],[0.449,0.096],[0.356,0.171],[0.218,0.082],[0.119,0.128],[0.045,0.18],[0.014,0.296],[0.0,0.428]],"apo":[[0.258,0.5],[0.209,0.406],[0.187,0.271],[0.196,0.148],[0.254,0.065],[0.357,0.035],[0.476,0.05],[0.635,0.046],[0.727,0.085],[0.875,0.0],[0.739,0.142],[0.606,0.149],[0.564,0.175],[0.543,0.339],[0.533,0.397],[0.564,0.357],[0.57,0.264],[0.714,0.291],[0.637,0.371],[0.627,0.432],[0.694,0.504],[0.771,0.428],[0.937,0.491],[0.898,0.306],[0.845,0.183],[0.74,0.137],[0.683,0.149],[0.571,0.064],[0.444,0.086],[0.364,0.144],[0.216,0.078],[0.116,0.117],[0.052,0.22],[0.059,0.36],[0.084,0.489]]},"method":"X-ray","resolution":2.721,"rna_type":"Fluorescing aptamer","rna_group":"Aptamer","num_chains":2,"total_rna_len":36,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["junction","hairpin loop"],"rmsd":7.9,"host_chain_rmsd":2.29,"pocket_rmsd":5.86,"lig_bsa":409.8,"ligand_burial":0.834,"tm_score":0.413,"rg_apo":13.56,"rg_holo":13.86,"rg_delta":0.3,"bp_rewire_src":"dssr","bp_formed":8,"bp_broken":10,"bp_conserved":30,"bp_formed_wc":2,"bp_broken_wc":0,"bp_conserved_wc":12,"maxd":22.6,"water":0,"hbonds":0,"mw":283.4,"logp":3.77,"thumb_img":true,"thumb_v":1785389624,"apo_alts":[],"n_apo_copies":0},{"id":"6E82_TFX_A_C_102_pocket","title":"6E82 (TFX) vs 6E80 (apo)","struct_title":"Crystal structure of the Corn aptamer mutant A14U in complex with ThT","holo_pdb":"6E82","ligand":"TFX","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"B","lig_resseq":"102","apo_pdb":"6E80","apo_chain":"A","holo_len":36,"apo_len":35,"pocket_size":23,"thumb":{"holo":[[0.207,0.483],[0.177,0.47],[0.162,0.406],[0.181,0.29],[0.215,0.17],[0.259,0.075],[0.356,0.045],[0.466,0.061],[0.647,0.036],[0.76,0.092],[0.866,0.096],[0.709,0.146],[0.599,0.126],[0.593,0.234],[0.566,0.36],[0.588,0.436],[0.609,0.385],[0.582,0.272],[0.733,0.302],[0.654,0.405],[0.697,0.444],[0.773,0.514],[0.85,0.433],[1.0,0.42],[0.915,0.268],[0.847,0.159],[0.755,0.139],[0.691,0.147],[0.584,0.078],[0.45,0.097],[0.357,0.157],[0.209,0.079],[0.114,0.131],[0.042,0.19],[0.01,0.317],[0.0,0.438]],"apo":[[0.259,0.506],[0.211,0.412],[0.189,0.275],[0.199,0.149],[0.257,0.063],[0.362,0.033],[0.483,0.049],[0.645,0.045],[0.74,0.085],[0.892,0.0],[0.753,0.145],[0.617,0.151],[0.575,0.179],[0.553,0.345],[0.542,0.404],[0.572,0.361],[0.577,0.266],[0.723,0.293],[0.645,0.374],[0.635,0.438],[0.705,0.512],[0.782,0.435],[0.952,0.499],[0.913,0.311],[0.859,0.185],[0.751,0.138],[0.692,0.149],[0.579,0.062],[0.449,0.084],[0.367,0.142],[0.217,0.075],[0.116,0.115],[0.051,0.221],[0.057,0.364],[0.082,0.495]]},"method":"X-ray","resolution":3.101,"rna_type":"Fluorescing aptamer","rna_group":"Aptamer","num_chains":2,"total_rna_len":36,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":97,"global_identity":97,"pocket_motifs":["internal loop","hairpin loop"],"rmsd":8.11,"host_chain_rmsd":2.06,"pocket_rmsd":5.71,"lig_bsa":404.8,"ligand_burial":0.866,"tm_score":0.396,"rg_apo":13.58,"rg_holo":14.0,"rg_delta":0.42,"bp_rewire_src":"dssr","bp_formed":4,"bp_broken":12,"bp_conserved":28,"bp_formed_wc":2,"bp_broken_wc":0,"bp_conserved_wc":10,"maxd":23.3,"water":0,"hbonds":1,"mw":283.4,"logp":3.77,"thumb_img":true,"thumb_v":1785488733,"apo_alts":[],"n_apo_copies":0},{"id":"6E84_J0D_A_C_102_pocket","title":"6E84 (J0D) vs 6E80 (apo)","struct_title":"Crystal structure of the Corn aptamer in complex with TO","holo_pdb":"6E84","ligand":"J0D","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"102","apo_pdb":"6E80","apo_chain":"A","holo_len":36,"apo_len":35,"pocket_size":22,"thumb":{"holo":[[0.209,0.478],[0.18,0.469],[0.181,0.409],[0.165,0.276],[0.231,0.172],[0.268,0.077],[0.376,0.042],[0.489,0.061],[0.65,0.039],[0.741,0.084],[0.86,0.07],[0.711,0.143],[0.592,0.172],[0.491,0.219],[0.564,0.373],[0.589,0.435],[0.609,0.372],[0.59,0.258],[0.733,0.287],[0.668,0.377],[0.711,0.445],[0.784,0.495],[0.84,0.411],[1.0,0.389],[0.914,0.251],[0.839,0.147],[0.757,0.129],[0.699,0.141],[0.588,0.062],[0.446,0.075],[0.375,0.139],[0.244,0.074],[0.116,0.08],[0.047,0.159],[0.011,0.301],[0.0,0.423]],"apo":[[0.264,0.493],[0.215,0.402],[0.194,0.268],[0.204,0.144],[0.262,0.057],[0.366,0.026],[0.486,0.042],[0.646,0.038],[0.738,0.08],[0.887,0.0],[0.749,0.144],[0.615,0.149],[0.572,0.181],[0.551,0.342],[0.541,0.396],[0.573,0.35],[0.58,0.253],[0.725,0.276],[0.647,0.358],[0.636,0.424],[0.702,0.502],[0.781,0.422],[0.948,0.486],[0.908,0.304],[0.856,0.179],[0.75,0.131],[0.694,0.137],[0.582,0.052],[0.454,0.074],[0.374,0.129],[0.225,0.064],[0.124,0.105],[0.059,0.211],[0.065,0.353],[0.09,0.481]]},"method":"X-ray","resolution":2.901,"rna_type":"Fluorescing aptamer","rna_group":"Aptamer","num_chains":2,"total_rna_len":36,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["junction","hairpin loop"],"rmsd":7.22,"host_chain_rmsd":2.52,"pocket_rmsd":5.4,"lig_bsa":426.3,"ligand_burial":0.886,"tm_score":0.362,"rg_apo":13.56,"rg_holo":13.87,"rg_delta":0.31,"bp_rewire_src":"dssr","bp_formed":10,"bp_broken":10,"bp_conserved":30,"bp_formed_wc":2,"bp_broken_wc":0,"bp_conserved_wc":14,"maxd":21.2,"water":0,"hbonds":0,"mw":305.4,"logp":4.2,"thumb_img":true,"thumb_v":1785389624,"apo_alts":[],"n_apo_copies":0},{"id":"6HMO_GDZ_A_C_101_pocket","title":"6HMO (GDZ) vs 6HMI (apo)","struct_title":"Solution structure of the RNA duplex formed by the 5'-end of U1snRNA and the 5'-splice site of SMN2 exon7 in complex with the SMN-C5 splicing modifier","holo_pdb":"6HMO","ligand":"GDZ","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"B","lig_resseq":"101","apo_pdb":"6HMI","apo_chain":"A","holo_len":11,"apo_len":11,"pocket_size":9,"thumb":{"holo":[[0.0,0.016],[0.033,0.096],[0.092,0.218],[0.18,0.345],[0.296,0.449],[0.426,0.484],[0.563,0.443],[0.679,0.348],[0.781,0.214],[0.841,0.126],[1.0,0.002]],"apo":[[0.042,0.0],[0.063,0.104],[0.121,0.213],[0.212,0.337],[0.328,0.436],[0.453,0.475],[0.575,0.445],[0.675,0.346],[0.744,0.211],[0.792,0.117],[0.887,0.06]]},"method":"NMR","resolution":null,"rna_type":"Small nuclear RNA (snRNA)","rna_group":"Post-transcriptional","num_chains":2,"total_rna_len":20,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["internal loop","bulge","stem"],"rmsd":2.21,"host_chain_rmsd":1.97,"pocket_rmsd":1.75,"lig_bsa":299.4,"ligand_burial":0.484,"tm_score":0.443,"rg_apo":12.65,"rg_holo":13.87,"rg_delta":1.22,"bp_rewire_src":"dssr","bp_formed":1,"bp_broken":1,"bp_conserved":9,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":7,"maxd":6.1,"water":0,"hbonds":1,"mw":392.4,"logp":2.21,"thumb_img":true,"thumb_v":1785488733,"apo_alts":[{"pdb":"5OR0","rmsd":3.47,"host_chain_rmsd":3.47,"apo_chain":"A","apo_len":11,"identity":100,"global_identity":100,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.252,"rg_delta":-0.63,"pocket_rmsd":2.81,"maxd":8.6,"bp_formed":1,"bp_broken":0,"bp_conserved":9}],"n_apo_copies":0},{"id":"6Q57_T0A_A_B_101_pocket","title":"6Q57 (T0A) vs 7KD1 (apo)","struct_title":"X-ray crystal structure of the tetrahydrofolate riboswitch aptamer bound to 5-deazatetrahydropterin","holo_pdb":"6Q57","ligand":"T0A","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"101","apo_pdb":"7KD1","apo_chain":"A","holo_len":89,"apo_len":89,"pocket_size":12,"thumb":{"holo":[[0.013,0.363],[0.073,0.417],[0.131,0.442],[0.181,0.439],[0.22,0.423],[0.258,0.376],[0.321,0.3],[0.378,0.265],[0.421,0.297],[0.454,0.331],[0.491,0.385],[0.528,0.442],[0.557,0.49],[0.591,0.509],[0.622,0.494],[0.656,0.451],[0.683,0.388],[0.712,0.324],[0.751,0.285],[0.804,0.292],[0.865,0.221],[0.778,0.21],[0.725,0.217],[0.673,0.24],[0.639,0.236],[0.618,0.196],[0.604,0.124],[0.576,0.057],[0.54,0.011],[0.507,0.0],[0.473,0.019],[0.438,0.066],[0.413,0.133],[0.384,0.193],[0.345,0.224],[0.27,0.316],[0.202,0.312],[0.182,0.239],[0.186,0.175],[0.223,0.141],[0.281,0.143],[0.342,0.142],[0.388,0.132],[0.391,0.204],[0.431,0.219],[0.469,0.196],[0.503,0.147],[0.537,0.089],[0.57,0.031],[0.604,0.002],[0.639,0.01],[0.674,0.037],[0.707,0.097],[0.73,0.166],[0.767,0.229],[0.821,0.305],[0.857,0.33],[0.892,0.386],[0.925,0.448],[0.996,0.492],[0.94,0.507],[0.875,0.54],[0.849,0.488],[0.828,0.46],[0.803,0.408],[0.772,0.347],[0.711,0.306],[0.627,0.283],[0.666,0.306],[0.626,0.319],[0.587,0.365],[0.55,0.424],[0.515,0.48],[0.484,0.506],[0.459,0.501],[0.425,0.465],[0.391,0.405],[0.358,0.355],[0.289,0.271],[0.258,0.217],[0.189,0.192],[0.138,0.203],[0.115,0.241],[0.125,0.302],[0.139,0.372],[0.135,0.44],[0.105,0.482],[0.06,0.492],[0.0,0.47]],"apo":[[0.035,0.447],[0.095,0.483],[0.151,0.487],[0.191,0.457],[0.222,0.419],[0.249,0.358],[0.327,0.292],[0.374,0.246],[0.417,0.264],[0.448,0.3],[0.478,0.356],[0.507,0.417],[0.535,0.472],[0.57,0.498],[0.607,0.491],[0.645,0.454],[0.68,0.394],[0.711,0.332],[0.754,0.292],[0.804,0.3],[0.876,0.232],[0.787,0.222],[0.731,0.232],[0.677,0.248],[0.647,0.234],[0.634,0.182],[0.63,0.114],[0.617,0.052],[0.591,0.014],[0.55,0.009],[0.5,0.037],[0.452,0.08],[0.409,0.128],[0.376,0.166],[0.328,0.231],[0.27,0.305],[0.202,0.283],[0.163,0.221],[0.151,0.168],[0.172,0.129],[0.219,0.118],[0.299,0.117],[0.339,0.128],[0.356,0.161],[0.424,0.179],[0.459,0.195],[0.493,0.169],[0.533,0.129],[0.586,0.083],[0.636,0.049],[0.679,0.042],[0.723,0.051],[0.741,0.091],[0.754,0.16],[0.777,0.231],[0.826,0.311],[0.859,0.342],[0.898,0.402],[0.928,0.444],[1.0,0.474],[0.943,0.498],[0.885,0.527],[0.848,0.498],[0.822,0.471],[0.801,0.412],[0.774,0.348],[0.717,0.306],[0.633,0.275],[0.67,0.306],[0.627,0.321],[0.587,0.363],[0.547,0.417],[0.507,0.464],[0.469,0.486],[0.438,0.472],[0.412,0.429],[0.387,0.367],[0.353,0.31],[0.295,0.227],[0.223,0.21],[0.157,0.208],[0.12,0.223],[0.106,0.252],[0.119,0.295],[0.137,0.361],[0.142,0.439],[0.123,0.495],[0.078,0.534],[0.017,0.558]]},"method":"X-ray","resolution":2.72,"rna_type":"Enzyme cofactor riboswitch","rna_group":"Riboswitch","num_chains":1,"total_rna_len":89,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["junction","bulge","stem"],"rmsd":3.32,"host_chain_rmsd":3.32,"pocket_rmsd":2.86,"lig_bsa":251.4,"ligand_burial":0.784,"tm_score":0.651,"rg_apo":23.35,"rg_holo":23.05,"rg_delta":-0.3,"bp_rewire_src":"dssr","bp_formed":2,"bp_broken":1,"bp_conserved":41,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":30,"maxd":7.8,"water":0,"hbonds":2,"mw":166.2,"logp":-0.29,"thumb_img":true,"thumb_v":1785389624,"apo_alts":[],"n_apo_copies":0},{"id":"6Q57_T0A_A_C_102_pocket","title":"6Q57 (T0A) vs 7KD1 (apo)","struct_title":"X-ray crystal structure of the tetrahydrofolate riboswitch aptamer bound to 5-deazatetrahydropterin","holo_pdb":"6Q57","ligand":"T0A","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"102","apo_pdb":"7KD1","apo_chain":"A","holo_len":89,"apo_len":89,"pocket_size":15,"thumb":{"holo":[[0.013,0.363],[0.073,0.417],[0.131,0.442],[0.181,0.439],[0.22,0.423],[0.258,0.376],[0.321,0.3],[0.378,0.265],[0.421,0.297],[0.454,0.331],[0.491,0.385],[0.528,0.442],[0.557,0.49],[0.591,0.509],[0.622,0.494],[0.656,0.451],[0.683,0.388],[0.712,0.324],[0.751,0.285],[0.804,0.292],[0.865,0.221],[0.778,0.21],[0.725,0.217],[0.673,0.24],[0.639,0.236],[0.618,0.196],[0.604,0.124],[0.576,0.057],[0.54,0.011],[0.507,0.0],[0.473,0.019],[0.438,0.066],[0.413,0.133],[0.384,0.193],[0.345,0.224],[0.27,0.316],[0.202,0.312],[0.182,0.239],[0.186,0.175],[0.223,0.141],[0.281,0.143],[0.342,0.142],[0.388,0.132],[0.391,0.204],[0.431,0.219],[0.469,0.196],[0.503,0.147],[0.537,0.089],[0.57,0.031],[0.604,0.002],[0.639,0.01],[0.674,0.037],[0.707,0.097],[0.73,0.166],[0.767,0.229],[0.821,0.305],[0.857,0.33],[0.892,0.386],[0.925,0.448],[0.996,0.492],[0.94,0.507],[0.875,0.54],[0.849,0.488],[0.828,0.46],[0.803,0.408],[0.772,0.347],[0.711,0.306],[0.627,0.283],[0.666,0.306],[0.626,0.319],[0.587,0.365],[0.55,0.424],[0.515,0.48],[0.484,0.506],[0.459,0.501],[0.425,0.465],[0.391,0.405],[0.358,0.355],[0.289,0.271],[0.258,0.217],[0.189,0.192],[0.138,0.203],[0.115,0.241],[0.125,0.302],[0.139,0.372],[0.135,0.44],[0.105,0.482],[0.06,0.492],[0.0,0.47]],"apo":[[0.035,0.447],[0.095,0.483],[0.151,0.487],[0.191,0.457],[0.222,0.419],[0.249,0.358],[0.327,0.292],[0.374,0.246],[0.417,0.264],[0.448,0.3],[0.478,0.356],[0.507,0.417],[0.535,0.472],[0.57,0.498],[0.607,0.491],[0.645,0.454],[0.68,0.394],[0.711,0.332],[0.754,0.292],[0.804,0.3],[0.876,0.232],[0.787,0.222],[0.731,0.232],[0.677,0.248],[0.647,0.234],[0.634,0.182],[0.63,0.114],[0.617,0.052],[0.591,0.014],[0.55,0.009],[0.5,0.037],[0.452,0.08],[0.409,0.128],[0.376,0.166],[0.328,0.231],[0.27,0.305],[0.202,0.283],[0.163,0.221],[0.151,0.168],[0.172,0.129],[0.219,0.118],[0.299,0.117],[0.339,0.128],[0.356,0.161],[0.424,0.179],[0.459,0.195],[0.493,0.169],[0.533,0.129],[0.586,0.083],[0.636,0.049],[0.679,0.042],[0.723,0.051],[0.741,0.091],[0.754,0.16],[0.777,0.231],[0.826,0.311],[0.859,0.342],[0.898,0.402],[0.928,0.444],[1.0,0.474],[0.943,0.498],[0.885,0.527],[0.848,0.498],[0.822,0.471],[0.801,0.412],[0.774,0.348],[0.717,0.306],[0.633,0.275],[0.67,0.306],[0.627,0.321],[0.587,0.363],[0.547,0.417],[0.507,0.464],[0.469,0.486],[0.438,0.472],[0.412,0.429],[0.387,0.367],[0.353,0.31],[0.295,0.227],[0.223,0.21],[0.157,0.208],[0.12,0.223],[0.106,0.252],[0.119,0.295],[0.137,0.361],[0.142,0.439],[0.123,0.495],[0.078,0.534],[0.017,0.558]]},"method":"X-ray","resolution":2.72,"rna_type":"Enzyme cofactor riboswitch","rna_group":"Riboswitch","num_chains":1,"total_rna_len":89,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["junction","hairpin loop","bulge","stem"],"rmsd":3.32,"host_chain_rmsd":3.32,"pocket_rmsd":4.47,"lig_bsa":242.1,"ligand_burial":0.787,"tm_score":0.651,"rg_apo":23.35,"rg_holo":23.05,"rg_delta":-0.3,"bp_rewire_src":"dssr","bp_formed":2,"bp_broken":1,"bp_conserved":41,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":30,"maxd":7.8,"water":0,"hbonds":4,"mw":166.2,"logp":-0.29,"thumb_img":true,"thumb_v":1785389624,"apo_alts":[],"n_apo_copies":0},{"id":"6U7Y_C5P_A_C_101_pocket","title":"6U7Y (C5P) vs 5VGW (apo)","struct_title":"RNA hairpin structure containing one TNA nucleotide as template","holo_pdb":"6U7Y","ligand":"C5P","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"101","apo_pdb":"5VGW","apo_chain":"A","holo_len":22,"apo_len":22,"pocket_size":8,"thumb":{"holo":[[0.017,0.054],[0.012,0.086],[0.049,0.152],[0.083,0.245],[0.149,0.337],[0.212,0.373],[0.29,0.361],[0.363,0.297],[0.435,0.224],[0.516,0.164],[0.529,0.048],[0.544,0.005],[0.577,0.034],[0.644,0.076],[0.686,0.167],[0.779,0.233],[0.867,0.218],[0.996,0.172],[0.95,0.18],[0.899,0.244],[0.817,0.28],[0.741,0.304]],"apo":[[0.012,0.061],[0.0,0.085],[0.032,0.152],[0.084,0.239],[0.142,0.337],[0.217,0.378],[0.29,0.359],[0.362,0.301],[0.432,0.223],[0.512,0.16],[0.532,0.049],[0.539,0.0],[0.569,0.02],[0.629,0.084],[0.693,0.173],[0.785,0.239],[0.873,0.226],[1.0,0.163],[0.954,0.182],[0.907,0.245],[0.824,0.283],[0.748,0.314]]},"method":"X-ray","resolution":2.95,"rna_type":"Self-replicating","rna_group":"Catalytic (ribozyme)","num_chains":2,"total_rna_len":32,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":95,"global_identity":91,"pocket_motifs":["hairpin loop","stem"],"rmsd":0.5,"host_chain_rmsd":0.49,"pocket_rmsd":0.67,"lig_bsa":212.0,"ligand_burial":0.48,"tm_score":0.674,"rg_apo":17.43,"rg_holo":17.15,"rg_delta":-0.28,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":1,"bp_conserved":16,"bp_formed_wc":0,"bp_broken_wc":1,"bp_conserved_wc":11,"maxd":1.0,"water":0,"hbonds":2,"mw":323.2,"logp":-2.45,"thumb_img":true,"thumb_v":1785444683,"apo_alts":[],"n_apo_copies":0},{"id":"6U7Z_C5P_A_C_101_pocket","title":"6U7Z (C5P) vs 5VGW (apo)","struct_title":"RNA hairpin structure containing one TNA nucleotide as primer","holo_pdb":"6U7Z","ligand":"C5P","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"101","apo_pdb":"5VGW","apo_chain":"A","holo_len":22,"apo_len":22,"pocket_size":11,"thumb":{"holo":[[0.02,0.042],[0.013,0.068],[0.044,0.139],[0.086,0.234],[0.142,0.33],[0.213,0.377],[0.286,0.368],[0.369,0.314],[0.44,0.236],[0.511,0.171],[0.538,0.061],[0.543,0.014],[0.571,0.04],[0.614,0.111],[0.69,0.187],[0.787,0.238],[0.871,0.21],[0.994,0.155],[0.946,0.169],[0.893,0.231],[0.81,0.264],[0.72,0.292]],"apo":[[0.012,0.062],[0.0,0.085],[0.032,0.151],[0.084,0.238],[0.142,0.336],[0.217,0.378],[0.291,0.36],[0.362,0.302],[0.432,0.224],[0.513,0.161],[0.532,0.05],[0.539,0.0],[0.569,0.019],[0.628,0.083],[0.693,0.171],[0.785,0.237],[0.873,0.224],[1.0,0.162],[0.954,0.181],[0.907,0.245],[0.824,0.283],[0.748,0.313]]},"method":"X-ray","resolution":2.71,"rna_type":"Self-replicating","rna_group":"Catalytic (ribozyme)","num_chains":2,"total_rna_len":32,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":95,"global_identity":86,"pocket_motifs":["hairpin loop","bulge","stem"],"rmsd":0.88,"host_chain_rmsd":0.89,"pocket_rmsd":1.08,"lig_bsa":214.2,"ligand_burial":0.476,"tm_score":0.456,"rg_apo":17.63,"rg_holo":17.34,"rg_delta":-0.29,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":1,"bp_conserved":16,"bp_formed_wc":0,"bp_broken_wc":1,"bp_conserved_wc":11,"maxd":1.5,"water":0,"hbonds":3,"mw":323.2,"logp":-2.45,"thumb_img":true,"thumb_v":1785444684,"apo_alts":[],"n_apo_copies":0},{"id":"6UET_SAM_A_B_301_pocket","title":"6UET (SAM) vs 6WLR (apo)","struct_title":"SAM-bound SAM-IV riboswitch","holo_pdb":"6UET","ligand":"SAM","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"301","apo_pdb":"6WLR","apo_chain":"A","holo_len":119,"apo_len":119,"pocket_size":26,"thumb":{"holo":[[0.53,0.333],[0.493,0.263],[0.445,0.224],[0.377,0.211],[0.314,0.16],[0.37,0.105],[0.384,0.089],[0.366,0.105],[0.311,0.154],[0.216,0.115],[0.291,0.164],[0.286,0.215],[0.273,0.285],[0.252,0.347],[0.223,0.391],[0.18,0.408],[0.126,0.39],[0.082,0.333],[0.0,0.322],[0.09,0.341],[0.143,0.309],[0.177,0.253],[0.283,0.252],[0.227,0.262],[0.165,0.224],[0.119,0.173],[0.098,0.132],[0.096,0.112],[0.106,0.135],[0.125,0.18],[0.103,0.265],[0.157,0.294],[0.215,0.337],[0.269,0.369],[0.318,0.365],[0.352,0.33],[0.372,0.269],[0.391,0.209],[0.392,0.153],[0.412,0.135],[0.426,0.135],[0.469,0.154],[0.527,0.168],[0.519,0.248],[0.578,0.29],[0.635,0.295],[0.679,0.259],[0.726,0.181],[0.779,0.144],[0.865,0.191],[0.895,0.208],[0.869,0.159],[0.833,0.101],[0.798,0.046],[0.755,0.009],[0.716,0.019],[0.679,0.053],[0.64,0.101],[0.613,0.152],[0.612,0.222],[0.591,0.287],[0.537,0.31],[0.481,0.312],[0.431,0.271],[0.383,0.224],[0.353,0.178],[0.221,0.155],[0.211,0.093],[0.193,0.071],[0.187,0.086],[0.208,0.125],[0.246,0.172],[0.292,0.226],[0.331,0.269],[0.274,0.34],[0.302,0.332],[0.347,0.313],[0.418,0.304],[0.494,0.329],[0.527,0.374],[0.558,0.36],[0.591,0.349],[0.587,0.408],[0.614,0.468],[0.651,0.52],[0.692,0.587],[0.696,0.605],[0.676,0.62],[0.625,0.635],[0.56,0.644],[0.493,0.654],[0.448,0.675],[0.423,0.708],[0.408,0.806],[0.48,0.85],[0.508,0.802],[0.515,0.743],[0.497,0.684],[0.476,0.628],[0.48,0.583],[0.514,0.55],[0.574,0.532],[0.644,0.524],[0.702,0.514],[0.739,0.508],[0.746,0.488],[0.723,0.452],[0.687,0.397],[0.654,0.337],[0.69,0.233],[0.703,0.189],[0.736,0.102],[0.778,0.055],[0.816,0.009],[0.857,0.0],[0.893,0.021],[0.936,0.068],[0.985,0.126],[1.0,0.168]],"apo":[[0.514,0.335],[0.497,0.271],[0.444,0.227],[0.381,0.213],[0.295,0.185],[0.332,0.093],[0.389,0.124],[0.337,0.103],[0.33,0.122],[0.257,0.161],[0.303,0.167],[0.292,0.223],[0.279,0.291],[0.257,0.353],[0.224,0.394],[0.179,0.406],[0.127,0.378],[0.076,0.339],[0.037,0.306],[0.074,0.347],[0.123,0.318],[0.167,0.262],[0.276,0.268],[0.231,0.254],[0.17,0.217],[0.126,0.171],[0.102,0.131],[0.099,0.112],[0.106,0.142],[0.13,0.195],[0.188,0.215],[0.155,0.295],[0.21,0.34],[0.266,0.371],[0.315,0.371],[0.352,0.337],[0.374,0.279],[0.38,0.218],[0.393,0.165],[0.393,0.129],[0.423,0.142],[0.46,0.158],[0.483,0.196],[0.527,0.262],[0.58,0.296],[0.631,0.298],[0.677,0.267],[0.706,0.182],[0.746,0.126],[0.816,0.2],[0.889,0.215],[0.875,0.173],[0.841,0.116],[0.805,0.057],[0.765,0.015],[0.724,0.015],[0.69,0.047],[0.655,0.103],[0.631,0.153],[0.609,0.219],[0.582,0.281],[0.545,0.32],[0.486,0.309],[0.434,0.265],[0.375,0.208],[0.333,0.182],[0.205,0.157],[0.197,0.102],[0.186,0.077],[0.183,0.087],[0.198,0.125],[0.244,0.168],[0.295,0.218],[0.331,0.274],[0.269,0.332],[0.303,0.325],[0.346,0.305],[0.414,0.29],[0.481,0.303],[0.535,0.333],[0.568,0.409],[0.598,0.343],[0.6,0.402],[0.621,0.464],[0.656,0.523],[0.681,0.571],[0.702,0.6],[0.678,0.621],[0.628,0.629],[0.56,0.634],[0.493,0.645],[0.449,0.666],[0.446,0.706],[0.414,0.81],[0.482,0.818],[0.512,0.78],[0.504,0.725],[0.484,0.67],[0.467,0.618],[0.478,0.576],[0.521,0.549],[0.587,0.53],[0.657,0.517],[0.711,0.501],[0.744,0.506],[0.746,0.491],[0.72,0.455],[0.686,0.398],[0.657,0.32],[0.707,0.232],[0.725,0.173],[0.772,0.135],[0.781,0.033],[0.822,0.001],[0.863,0.004],[0.901,0.04],[0.938,0.089],[0.964,0.132],[0.953,0.182]]},"method":"EM","resolution":4.1,"rna_type":"Enzyme cofactor riboswitch","rna_group":"Riboswitch","num_chains":1,"total_rna_len":119,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["junction","internal loop","hairpin loop","bulge","stem","single strand"],"rmsd":2.03,"host_chain_rmsd":2.03,"pocket_rmsd":2.25,"lig_bsa":418.3,"ligand_burial":0.816,"tm_score":0.86,"rg_apo":25.18,"rg_holo":25.47,"rg_delta":0.29,"bp_rewire_src":"dssr","bp_formed":12,"bp_broken":4,"bp_conserved":45,"bp_formed_wc":1,"bp_broken_wc":0,"bp_conserved_wc":39,"maxd":8.1,"water":0,"hbonds":6,"mw":398.4,"logp":-3.26,"thumb_img":true,"thumb_v":1785389624,"apo_alts":[{"pdb":"6UES","rmsd":1.72,"host_chain_rmsd":1.72,"apo_chain":"A","apo_len":119,"identity":100,"global_identity":100,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.87,"rg_delta":0.26,"pocket_rmsd":2.19,"maxd":4.7,"bp_formed":12,"bp_broken":13,"bp_conserved":45},{"pdb":"6WLQ","rmsd":3.38,"host_chain_rmsd":3.38,"apo_chain":"A","apo_len":119,"identity":100,"global_identity":100,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.823,"rg_delta":-0.17,"pocket_rmsd":3.12,"maxd":9.3,"bp_formed":11,"bp_broken":11,"bp_conserved":46}],"n_apo_copies":0},{"id":"6VA2_QSV_A_C_101_pocket","title":"6VA2 (QSV) vs 6VA1 (apo)","struct_title":"Solution Structure of the Tau pre-mRNA Exon 10 Splicing Regulatory Element Bound to MH5","holo_pdb":"6VA2","ligand":"QSV","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"101","apo_pdb":"6VA1","apo_chain":"A","holo_len":11,"apo_len":11,"pocket_size":10,"thumb":{"holo":[[0.996,0.639],[1.0,0.486],[0.954,0.32],[0.852,0.185],[0.698,0.118],[0.5,0.0],[0.447,0.174],[0.297,0.243],[0.162,0.347],[0.061,0.474],[0.0,0.594]],"apo":[[0.84,0.672],[0.91,0.53],[0.909,0.348],[0.833,0.179],[0.685,0.087],[0.521,0.039],[0.37,0.071],[0.26,0.181],[0.211,0.332],[0.207,0.503],[0.222,0.637]]},"method":"NMR","resolution":null,"rna_type":"Messenger RNA (mRNA)","rna_group":"Protein synthesis","num_chains":2,"total_rna_len":21,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["bulge","stem"],"rmsd":4.61,"host_chain_rmsd":3.83,"pocket_rmsd":3.26,"lig_bsa":336.2,"ligand_burial":0.538,"tm_score":0.21,"rg_apo":12.12,"rg_holo":13.82,"rg_delta":1.7,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":0,"bp_conserved":10,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":10,"maxd":8.4,"water":0,"hbonds":1,"mw":408.5,"logp":2.99,"thumb_img":true,"thumb_v":1785389624,"apo_alts":[],"n_apo_copies":0},{"id":"6VA3_MQC_A_C_101_pocket","title":"6VA3 (MQC) vs 6VA1 (apo)","struct_title":"Solution Structure of the Tau pre-mRNA Exon 10 Splicing Regulatory Element Bound to MQC","holo_pdb":"6VA3","ligand":"MQC","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"101","apo_pdb":"6VA1","apo_chain":"A","holo_len":11,"apo_len":11,"pocket_size":10,"thumb":{"holo":[[0.991,0.048],[1.0,0.201],[0.975,0.382],[0.868,0.536],[0.696,0.59],[0.486,0.635],[0.342,0.595],[0.216,0.484],[0.113,0.334],[0.047,0.185],[0.0,0.085]],"apo":[[0.857,0.0],[0.929,0.157],[0.922,0.356],[0.835,0.539],[0.671,0.635],[0.489,0.683],[0.326,0.643],[0.208,0.52],[0.159,0.353],[0.16,0.167],[0.179,0.021]]},"method":"NMR","resolution":null,"rna_type":"Messenger RNA (mRNA)","rna_group":"Protein synthesis","num_chains":2,"total_rna_len":21,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["bulge","stem"],"rmsd":3.59,"host_chain_rmsd":3.04,"pocket_rmsd":2.71,"lig_bsa":351.8,"ligand_burial":0.671,"tm_score":0.203,"rg_apo":12.12,"rg_holo":13.37,"rg_delta":1.25,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":0,"bp_conserved":10,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":10,"maxd":6.3,"water":0,"hbonds":2,"mw":306.4,"logp":3.58,"thumb_img":true,"thumb_v":1785389624,"apo_alts":[],"n_apo_copies":0},{"id":"6VA4_QSY_B_C_101_pocket","title":"6VA4 (QSY) vs 6VA1 (apo)","struct_title":"Solution Structure of the Tau pre-mRNA Exon 10 Splicing Regulatory Element Bound to MIP","holo_pdb":"6VA4","ligand":"QSY","holo_chain":"B","holo_rna_chain":"B","lig_auth_chain":"B","nearest_rna_chain":"B","lig_resseq":"101","apo_pdb":"6VA1","apo_chain":"B","holo_len":10,"apo_len":10,"pocket_size":14,"thumb":{"holo":[[0.026,0.548],[0.044,0.47],[0.115,0.315],[0.237,0.14],[0.391,0.031],[0.589,0.06],[0.75,0.163],[0.898,0.321],[0.982,0.48],[1.0,0.622]],"apo":[[0.0,0.563],[0.078,0.501],[0.18,0.351],[0.298,0.186],[0.42,0.035],[0.598,0.0],[0.773,0.111],[0.89,0.278],[0.911,0.473],[0.887,0.652]]},"method":"NMR","resolution":null,"rna_type":"Messenger RNA (mRNA)","rna_group":"Protein synthesis","num_chains":2,"total_rna_len":21,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["bulge","stem"],"rmsd":2.72,"host_chain_rmsd":1.84,"pocket_rmsd":1.99,"lig_bsa":375.9,"ligand_burial":0.679,"tm_score":0.264,"rg_apo":11.2,"rg_holo":11.78,"rg_delta":0.58,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":0,"bp_conserved":10,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":10,"maxd":6.7,"water":0,"hbonds":0,"mw":369.5,"logp":2.12,"thumb_img":true,"thumb_v":1785389624,"apo_alts":[],"n_apo_copies":0},{"id":"6VUI_PRF_A_B_101_pocket","title":"6VUI (PRF) vs 3Q51 (apo)","struct_title":"Metabolite-bound PreQ1 riboswitch with Mn2+","holo_pdb":"6VUI","ligand":"PRF","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"101","apo_pdb":"3Q51","apo_chain":"A","holo_len":33,"apo_len":32,"pocket_size":17,"thumb":{"holo":[[0.687,0.603],[0.726,0.526],[0.722,0.406],[0.645,0.301],[0.541,0.2],[0.459,0.059],[0.336,0.071],[0.221,0.161],[0.084,0.212],[0.145,0.32],[0.31,0.36],[0.387,0.549],[0.354,0.623],[0.268,0.499],[0.307,0.375],[0.389,0.245],[0.514,0.179],[0.651,0.182],[0.759,0.259],[0.848,0.381],[0.903,0.472],[1.0,0.312],[0.823,0.348],[0.82,0.118],[0.746,0.007],[0.626,0.004],[0.501,0.0],[0.348,0.016],[0.277,0.078],[0.221,0.211],[0.162,0.331],[0.106,0.479],[0.025,0.422]],"apo":[[0.701,0.592],[0.733,0.52],[0.719,0.408],[0.646,0.307],[0.542,0.21],[0.461,0.068],[0.339,0.087],[0.223,0.16],[0.082,0.213],[0.141,0.311],[0.314,0.363],[0.292,0.536],[0.359,0.39],[0.352,0.444],[0.394,0.258],[0.522,0.183],[0.654,0.183],[0.76,0.255],[0.855,0.37],[0.897,0.464],[0.986,0.311],[0.818,0.344],[0.815,0.117],[0.74,0.004],[0.622,0.001],[0.495,0.011],[0.363,0.024],[0.28,0.098],[0.221,0.224],[0.161,0.336],[0.068,0.46],[0.0,0.434]]},"method":"X-ray","resolution":2.681,"rna_type":"Purine-compound riboswitch","rna_group":"Riboswitch","num_chains":1,"total_rna_len":33,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["internal loop","hairpin loop","stem"],"rmsd":1.86,"host_chain_rmsd":1.86,"pocket_rmsd":2.5,"lig_bsa":280.6,"ligand_burial":0.876,"tm_score":0.645,"rg_apo":12.93,"rg_holo":13.06,"rg_delta":0.13,"bp_rewire_src":"dssr","bp_formed":2,"bp_broken":3,"bp_conserved":15,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":7,"maxd":6.8,"water":0,"hbonds":3,"mw":179.2,"logp":-0.71,"thumb_img":true,"thumb_v":1785389624,"apo_alts":[],"n_apo_copies":0},{"id":"6VWT_ADE_A_C_101_pocket","title":"6VWT (ADE) vs 5E54 (apo)","struct_title":"Transitional unit cell 1 of adenine riboswitch aptamer crystal phase transition upon ligand binding","holo_pdb":"6VWT","ligand":"ADE","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"101","apo_pdb":"5E54","apo_chain":"B","holo_len":71,"apo_len":68,"pocket_size":16,"thumb":{"holo":[[0.044,0.214],[0.098,0.134],[0.133,0.077],[0.156,0.06],[0.173,0.072],[0.187,0.122],[0.208,0.196],[0.249,0.276],[0.323,0.316],[0.414,0.285],[0.474,0.241],[0.469,0.224],[0.527,0.278],[0.582,0.337],[0.637,0.401],[0.693,0.443],[0.751,0.464],[0.795,0.435],[0.822,0.367],[0.851,0.286],[0.879,0.206],[0.918,0.146],[0.891,0.033],[0.882,0.028],[0.862,0.124],[0.808,0.165],[0.785,0.237],[0.747,0.306],[0.703,0.377],[0.674,0.453],[0.63,0.48],[0.584,0.481],[0.53,0.443],[0.467,0.389],[0.358,0.39],[0.26,0.465],[0.296,0.408],[0.302,0.407],[0.362,0.352],[0.427,0.3],[0.495,0.294],[0.53,0.211],[0.552,0.131],[0.582,0.058],[0.624,0.013],[0.673,0.0],[0.728,0.024],[0.794,0.071],[0.867,0.11],[0.97,0.038],[1.0,0.118],[0.969,0.196],[0.897,0.249],[0.839,0.231],[0.77,0.185],[0.707,0.132],[0.639,0.084],[0.571,0.042],[0.51,0.037],[0.461,0.068],[0.404,0.153],[0.366,0.221],[0.322,0.288],[0.264,0.334],[0.192,0.327],[0.133,0.278],[0.09,0.205],[0.063,0.127],[0.048,0.062],[0.037,0.033],[0.02,0.044]],"apo":[[0.0,0.201],[0.055,0.131],[0.108,0.067],[0.165,0.023],[0.216,0.012],[0.244,0.066],[0.262,0.142],[0.279,0.229],[0.305,0.301],[0.433,0.316],[0.458,0.239],[0.458,0.245],[0.509,0.302],[0.569,0.353],[0.636,0.409],[0.703,0.443],[0.767,0.459],[0.811,0.437],[0.831,0.37],[0.855,0.289],[0.871,0.204],[0.9,0.144],[0.869,0.036],[0.865,0.025],[0.848,0.125],[0.792,0.164],[0.785,0.248],[0.76,0.325],[0.724,0.397],[0.701,0.47],[0.661,0.504],[0.605,0.501],[0.539,0.464],[0.467,0.421],[0.391,0.404],[0.311,0.324],[0.379,0.332],[0.416,0.446],[0.469,0.44],[0.455,0.363],[0.5,0.323],[0.522,0.228],[0.546,0.148],[0.57,0.073],[0.601,0.021],[0.644,0.004],[0.703,0.029],[0.771,0.069],[0.846,0.101],[0.952,0.036],[0.975,0.114],[0.945,0.183],[0.886,0.242],[0.825,0.227],[0.756,0.182],[0.685,0.133],[0.613,0.092],[0.55,0.059],[0.496,0.056],[0.45,0.089],[0.391,0.173],[0.328,0.239],[0.266,0.281],[0.213,0.298],[0.168,0.27]]},"method":"X-ray","resolution":3.03,"rna_type":"Purine-compound riboswitch","rna_group":"Riboswitch","num_chains":1,"total_rna_len":142,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["junction","hairpin loop","stem"],"rmsd":4.44,"host_chain_rmsd":4.44,"pocket_rmsd":6.11,"lig_bsa":245.6,"ligand_burial":0.973,"tm_score":0.626,"rg_apo":19.33,"rg_holo":19.77,"rg_delta":0.44,"bp_rewire_src":"dssr","bp_formed":9,"bp_broken":8,"bp_conserved":26,"bp_formed_wc":4,"bp_broken_wc":2,"bp_conserved_wc":21,"maxd":11.5,"water":0,"hbonds":3,"mw":135.1,"logp":-0.06,"thumb_img":true,"thumb_v":1785389624,"apo_alts":[],"n_apo_copies":2},{"id":"6VWT_ADE_B_H_101_pocket","title":"6VWT (ADE) vs 5E54 (apo)","struct_title":"Transitional unit cell 1 of adenine riboswitch aptamer crystal phase transition upon ligand binding","holo_pdb":"6VWT","ligand":"ADE","holo_chain":"B","holo_rna_chain":"B","lig_auth_chain":"B","nearest_rna_chain":"B","lig_resseq":"101","apo_pdb":"5E54","apo_chain":"B","holo_len":71,"apo_len":68,"pocket_size":16,"thumb":{"holo":[[0.044,0.214],[0.098,0.134],[0.133,0.077],[0.156,0.06],[0.173,0.072],[0.187,0.122],[0.208,0.196],[0.249,0.276],[0.323,0.316],[0.414,0.285],[0.474,0.241],[0.469,0.224],[0.527,0.278],[0.582,0.337],[0.637,0.401],[0.693,0.443],[0.751,0.464],[0.795,0.435],[0.822,0.367],[0.851,0.286],[0.879,0.206],[0.918,0.146],[0.891,0.033],[0.882,0.028],[0.862,0.124],[0.808,0.165],[0.785,0.237],[0.747,0.306],[0.703,0.377],[0.674,0.453],[0.63,0.48],[0.584,0.481],[0.53,0.443],[0.467,0.389],[0.358,0.39],[0.26,0.465],[0.296,0.408],[0.302,0.407],[0.362,0.352],[0.427,0.3],[0.495,0.294],[0.53,0.211],[0.552,0.131],[0.582,0.058],[0.624,0.013],[0.673,0.0],[0.728,0.024],[0.794,0.071],[0.867,0.11],[0.97,0.038],[1.0,0.118],[0.969,0.196],[0.897,0.249],[0.839,0.231],[0.77,0.185],[0.707,0.132],[0.639,0.084],[0.571,0.042],[0.51,0.037],[0.461,0.068],[0.404,0.153],[0.366,0.221],[0.322,0.288],[0.264,0.334],[0.192,0.327],[0.133,0.278],[0.09,0.205],[0.063,0.127],[0.048,0.062],[0.037,0.033],[0.02,0.044]],"apo":[[0.0,0.201],[0.055,0.131],[0.108,0.067],[0.165,0.023],[0.216,0.012],[0.244,0.066],[0.262,0.142],[0.279,0.229],[0.305,0.301],[0.433,0.316],[0.458,0.239],[0.458,0.245],[0.509,0.302],[0.569,0.353],[0.636,0.409],[0.703,0.443],[0.767,0.459],[0.811,0.437],[0.831,0.37],[0.855,0.289],[0.871,0.204],[0.9,0.144],[0.869,0.036],[0.865,0.025],[0.848,0.125],[0.792,0.164],[0.785,0.248],[0.76,0.325],[0.724,0.397],[0.701,0.47],[0.661,0.504],[0.605,0.501],[0.539,0.464],[0.467,0.421],[0.391,0.404],[0.311,0.324],[0.379,0.332],[0.416,0.446],[0.469,0.44],[0.455,0.363],[0.5,0.323],[0.522,0.228],[0.546,0.148],[0.57,0.073],[0.601,0.021],[0.644,0.004],[0.703,0.029],[0.771,0.069],[0.846,0.101],[0.952,0.036],[0.975,0.114],[0.945,0.183],[0.886,0.242],[0.825,0.227],[0.756,0.182],[0.685,0.133],[0.613,0.092],[0.55,0.059],[0.496,0.056],[0.45,0.089],[0.391,0.173],[0.328,0.239],[0.266,0.281],[0.213,0.298],[0.168,0.27]]},"method":"X-ray","resolution":3.03,"rna_type":"Purine-compound riboswitch","rna_group":"Riboswitch","num_chains":1,"total_rna_len":142,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["junction","hairpin loop","stem"],"rmsd":4.44,"host_chain_rmsd":4.44,"pocket_rmsd":6.11,"lig_bsa":261.6,"ligand_burial":0.975,"tm_score":0.626,"rg_apo":19.33,"rg_holo":19.77,"rg_delta":0.44,"bp_rewire_src":"dssr","bp_formed":9,"bp_broken":8,"bp_conserved":26,"bp_formed_wc":4,"bp_broken_wc":2,"bp_conserved_wc":21,"maxd":11.5,"water":0,"hbonds":3,"mw":135.1,"logp":-0.06,"thumb_img":true,"thumb_v":1785389624,"apo_alts":[],"n_apo_copies":2},{"id":"6VWV_ADE_A_C_101_pocket","title":"6VWV (ADE) vs 5E54 (apo)","struct_title":"Transitional unit cell 2 of adenine riboswitch aptamer crystal phase transition upon ligand binding","holo_pdb":"6VWV","ligand":"ADE","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"101","apo_pdb":"5E54","apo_chain":"B","holo_len":71,"apo_len":68,"pocket_size":16,"thumb":{"holo":[[0.909,0.243],[0.873,0.322],[0.851,0.392],[0.833,0.433],[0.815,0.434],[0.802,0.39],[0.78,0.319],[0.739,0.241],[0.666,0.198],[0.58,0.226],[0.518,0.272],[0.521,0.287],[0.468,0.233],[0.412,0.174],[0.354,0.111],[0.301,0.073],[0.249,0.051],[0.207,0.074],[0.183,0.134],[0.154,0.208],[0.125,0.293],[0.084,0.351],[0.102,0.462],[0.109,0.475],[0.138,0.38],[0.194,0.34],[0.221,0.265],[0.259,0.197],[0.299,0.126],[0.323,0.051],[0.365,0.022],[0.414,0.028],[0.463,0.066],[0.524,0.121],[0.636,0.126],[0.731,0.051],[0.69,0.106],[0.683,0.099],[0.624,0.149],[0.563,0.201],[0.495,0.216],[0.462,0.3],[0.44,0.381],[0.407,0.454],[0.364,0.497],[0.312,0.504],[0.261,0.474],[0.199,0.426],[0.128,0.385],[0.006,0.432],[0.0,0.362],[0.034,0.295],[0.104,0.243],[0.16,0.262],[0.227,0.314],[0.288,0.364],[0.354,0.415],[0.419,0.462],[0.481,0.473],[0.529,0.44],[0.582,0.355],[0.619,0.285],[0.665,0.217],[0.725,0.173],[0.792,0.184],[0.85,0.237],[0.896,0.308],[0.93,0.384],[0.953,0.433],[0.973,0.442],[1.0,0.421]],"apo":[[0.989,0.303],[0.934,0.372],[0.881,0.436],[0.823,0.48],[0.773,0.492],[0.744,0.438],[0.726,0.363],[0.71,0.276],[0.685,0.205],[0.557,0.19],[0.532,0.265],[0.533,0.258],[0.482,0.203],[0.422,0.151],[0.356,0.096],[0.291,0.061],[0.228,0.045],[0.185,0.065],[0.164,0.131],[0.141,0.212],[0.124,0.295],[0.094,0.356],[0.124,0.464],[0.13,0.473],[0.146,0.374],[0.202,0.336],[0.21,0.252],[0.235,0.176],[0.272,0.105],[0.294,0.033],[0.333,0.0],[0.389,0.004],[0.453,0.042],[0.525,0.085],[0.601,0.101],[0.68,0.181],[0.613,0.171],[0.577,0.058],[0.525,0.063],[0.538,0.14],[0.492,0.18],[0.471,0.273],[0.447,0.353],[0.423,0.427],[0.39,0.48],[0.347,0.497],[0.289,0.473],[0.221,0.433],[0.147,0.401],[0.041,0.465],[0.019,0.386],[0.048,0.318],[0.108,0.26],[0.168,0.275],[0.236,0.32],[0.307,0.37],[0.378,0.411],[0.441,0.443],[0.495,0.446],[0.541,0.412],[0.601,0.329],[0.664,0.263],[0.725,0.222],[0.777,0.207],[0.82,0.236]]},"method":"X-ray","resolution":3.0,"rna_type":"Purine-compound riboswitch","rna_group":"Riboswitch","num_chains":1,"total_rna_len":142,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["junction","hairpin loop","stem"],"rmsd":4.47,"host_chain_rmsd":4.47,"pocket_rmsd":6.03,"lig_bsa":250.7,"ligand_burial":0.98,"tm_score":0.625,"rg_apo":19.33,"rg_holo":19.54,"rg_delta":0.21,"bp_rewire_src":"dssr","bp_formed":8,"bp_broken":6,"bp_conserved":28,"bp_formed_wc":4,"bp_broken_wc":2,"bp_conserved_wc":21,"maxd":11.0,"water":0,"hbonds":4,"mw":135.1,"logp":-0.06,"thumb_img":true,"thumb_v":1785389624,"apo_alts":[],"n_apo_copies":2},{"id":"6VWV_ADE_B_F_101_pocket","title":"6VWV (ADE) vs 5E54 (apo)","struct_title":"Transitional unit cell 2 of adenine riboswitch aptamer crystal phase transition upon ligand binding","holo_pdb":"6VWV","ligand":"ADE","holo_chain":"B","holo_rna_chain":"B","lig_auth_chain":"B","nearest_rna_chain":"B","lig_resseq":"101","apo_pdb":"5E54","apo_chain":"B","holo_len":71,"apo_len":68,"pocket_size":16,"thumb":{"holo":[[0.909,0.243],[0.873,0.322],[0.851,0.392],[0.833,0.433],[0.815,0.434],[0.802,0.39],[0.78,0.319],[0.739,0.241],[0.666,0.198],[0.58,0.226],[0.518,0.272],[0.521,0.287],[0.468,0.233],[0.412,0.174],[0.354,0.111],[0.301,0.073],[0.248,0.051],[0.207,0.074],[0.183,0.133],[0.154,0.208],[0.125,0.293],[0.084,0.35],[0.102,0.461],[0.11,0.475],[0.138,0.38],[0.194,0.34],[0.221,0.265],[0.259,0.197],[0.299,0.126],[0.323,0.051],[0.365,0.022],[0.414,0.028],[0.463,0.066],[0.524,0.121],[0.636,0.126],[0.731,0.051],[0.69,0.106],[0.683,0.099],[0.624,0.149],[0.563,0.201],[0.495,0.216],[0.462,0.3],[0.44,0.381],[0.407,0.454],[0.364,0.497],[0.312,0.504],[0.261,0.474],[0.199,0.426],[0.128,0.385],[0.007,0.432],[0.0,0.362],[0.034,0.295],[0.104,0.244],[0.16,0.261],[0.227,0.314],[0.288,0.364],[0.355,0.415],[0.419,0.462],[0.481,0.473],[0.529,0.44],[0.582,0.355],[0.619,0.285],[0.665,0.217],[0.725,0.173],[0.792,0.184],[0.85,0.237],[0.896,0.308],[0.93,0.384],[0.953,0.433],[0.973,0.442],[1.0,0.42]],"apo":[[0.989,0.303],[0.934,0.372],[0.881,0.436],[0.823,0.48],[0.773,0.492],[0.744,0.438],[0.726,0.363],[0.71,0.276],[0.685,0.205],[0.557,0.19],[0.532,0.265],[0.533,0.258],[0.482,0.203],[0.422,0.151],[0.356,0.096],[0.291,0.061],[0.228,0.045],[0.185,0.065],[0.164,0.131],[0.141,0.212],[0.124,0.295],[0.094,0.356],[0.124,0.464],[0.13,0.473],[0.146,0.374],[0.202,0.336],[0.21,0.252],[0.235,0.176],[0.272,0.105],[0.294,0.033],[0.333,0.0],[0.389,0.004],[0.453,0.042],[0.525,0.085],[0.601,0.101],[0.68,0.181],[0.613,0.171],[0.577,0.058],[0.525,0.063],[0.538,0.14],[0.492,0.18],[0.471,0.273],[0.447,0.353],[0.423,0.427],[0.391,0.48],[0.347,0.497],[0.289,0.473],[0.221,0.433],[0.147,0.401],[0.041,0.465],[0.019,0.386],[0.048,0.318],[0.108,0.26],[0.168,0.275],[0.236,0.32],[0.307,0.37],[0.378,0.411],[0.441,0.443],[0.495,0.446],[0.541,0.412],[0.601,0.329],[0.664,0.263],[0.725,0.222],[0.777,0.207],[0.82,0.236]]},"method":"X-ray","resolution":3.0,"rna_type":"Purine-compound riboswitch","rna_group":"Riboswitch","num_chains":1,"total_rna_len":142,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["junction","hairpin loop","stem"],"rmsd":4.47,"host_chain_rmsd":4.47,"pocket_rmsd":6.03,"lig_bsa":263.3,"ligand_burial":0.981,"tm_score":0.625,"rg_apo":19.33,"rg_holo":19.54,"rg_delta":0.21,"bp_rewire_src":"dssr","bp_formed":8,"bp_broken":6,"bp_conserved":28,"bp_formed_wc":4,"bp_broken_wc":2,"bp_conserved_wc":21,"maxd":11.0,"water":0,"hbonds":4,"mw":135.1,"logp":-0.06,"thumb_img":true,"thumb_v":1785389624,"apo_alts":[],"n_apo_copies":2},{"id":"6XB7_UYS_A_B_101_pocket","title":"6XB7 (UYS) vs 5V16 (apo)","struct_title":"IRES-targeting Small Molecule Inhibits Enterovirus 71 Replication via Allosteric Stabilization of a Ternary Complex","holo_pdb":"6XB7","ligand":"UYS","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"101","apo_pdb":"5V16","apo_chain":"A","holo_len":41,"apo_len":41,"pocket_size":13,"thumb":{"holo":[[0.143,0.421],[0.11,0.416],[0.115,0.396],[0.151,0.35],[0.2,0.292],[0.227,0.178],[0.237,0.097],[0.294,0.028],[0.333,0.05],[0.415,0.03],[0.468,0.0],[0.409,0.101],[0.416,0.168],[0.442,0.212],[0.504,0.228],[0.578,0.222],[0.668,0.206],[0.752,0.192],[0.818,0.193],[0.858,0.228],[0.88,0.299],[0.869,0.39],[0.875,0.493],[0.792,0.494],[0.728,0.474],[0.726,0.396],[0.754,0.313],[0.766,0.227],[0.765,0.156],[0.736,0.114],[0.679,0.099],[0.608,0.099],[0.526,0.116],[0.443,0.131],[0.366,0.11],[0.292,0.157],[0.335,0.226],[0.317,0.301],[0.27,0.378],[0.217,0.447],[0.18,0.502]],"apo":[[0.116,0.435],[0.064,0.365],[0.039,0.292],[0.05,0.223],[0.104,0.164],[0.179,0.12],[0.262,0.108],[0.335,0.113],[0.368,0.087],[0.433,0.129],[0.459,0.19],[0.484,0.267],[0.506,0.324],[0.537,0.336],[0.58,0.311],[0.633,0.258],[0.702,0.198],[0.764,0.15],[0.818,0.123],[0.868,0.156],[0.922,0.225],[0.959,0.31],[1.0,0.375],[0.925,0.414],[0.854,0.437],[0.812,0.377],[0.805,0.297],[0.786,0.209],[0.75,0.133],[0.698,0.101],[0.639,0.109],[0.577,0.142],[0.518,0.204],[0.463,0.268],[0.415,0.297],[0.315,0.226],[0.254,0.232],[0.168,0.238],[0.083,0.267],[0.02,0.322],[0.0,0.396]]},"method":"NMR","resolution":null,"rna_type":"IRES element","rna_group":"Translation regulation","num_chains":1,"total_rna_len":41,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["internal loop","stem"],"rmsd":8.19,"host_chain_rmsd":8.19,"pocket_rmsd":9.06,"lig_bsa":439.2,"ligand_burial":0.789,"tm_score":0.319,"rg_apo":20.29,"rg_holo":18.52,"rg_delta":-1.77,"bp_rewire_src":"dssr","bp_formed":2,"bp_broken":2,"bp_conserved":16,"bp_formed_wc":0,"bp_broken_wc":1,"bp_conserved_wc":14,"maxd":14.4,"water":0,"hbonds":3,"mw":323.4,"logp":-0.06,"thumb_img":true,"thumb_v":1785389624,"apo_alts":[],"n_apo_copies":0},{"id":"7E9E_J0C_A_B_101_pocket","title":"7E9E (J0C) vs 3Q51 (apo)","struct_title":"Crystal structure of a class I PreQ1 riboswitch aptamer (ab13-14) complexed with a cognate ligand-derived photoaffinity probe","holo_pdb":"7E9E","ligand":"J0C","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"101","apo_pdb":"3Q51","apo_chain":"A","holo_len":33,"apo_len":32,"pocket_size":18,"thumb":{"holo":[[0.298,0.095],[0.259,0.172],[0.268,0.288],[0.335,0.401],[0.44,0.504],[0.52,0.649],[0.651,0.627],[0.764,0.552],[0.917,0.498],[0.852,0.395],[0.675,0.345],[0.679,0.205],[0.688,0.0],[0.722,0.138],[0.695,0.313],[0.601,0.438],[0.474,0.503],[0.338,0.5],[0.222,0.433],[0.133,0.312],[0.079,0.236],[0.038,0.367],[0.148,0.345],[0.16,0.572],[0.233,0.686],[0.356,0.69],[0.482,0.688],[0.628,0.673],[0.703,0.603],[0.768,0.481],[0.865,0.392],[0.917,0.245],[0.975,0.256]],"apo":[[0.295,0.096],[0.262,0.172],[0.272,0.287],[0.343,0.393],[0.445,0.493],[0.523,0.64],[0.647,0.624],[0.767,0.555],[0.911,0.509],[0.854,0.406],[0.681,0.345],[0.708,0.171],[0.636,0.315],[0.643,0.254],[0.595,0.443],[0.463,0.515],[0.33,0.512],[0.226,0.437],[0.133,0.317],[0.094,0.225],[0.0,0.38],[0.17,0.348],[0.167,0.577],[0.239,0.695],[0.358,0.7],[0.486,0.692],[0.62,0.68],[0.705,0.607],[0.769,0.482],[0.834,0.374],[0.931,0.252],[1.0,0.284]]},"method":"X-ray","resolution":1.57,"rna_type":"Purine-compound riboswitch","rna_group":"Riboswitch","num_chains":1,"total_rna_len":31,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":94,"global_identity":94,"pocket_motifs":["internal loop","hairpin loop","stem"],"rmsd":1.18,"host_chain_rmsd":1.18,"pocket_rmsd":1.26,"lig_bsa":337.7,"ligand_burial":0.707,"tm_score":0.62,"rg_apo":13.08,"rg_holo":12.95,"rg_delta":-0.13,"bp_rewire_src":"dssr","bp_formed":4,"bp_broken":2,"bp_conserved":16,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":7,"maxd":3.9,"water":0,"hbonds":5,"mw":299.3,"logp":0.89,"thumb_img":true,"thumb_v":1785444684,"apo_alts":[],"n_apo_copies":0},{"id":"7E9I_J0C_A_B_101_pocket","title":"7E9I (J0C) vs 3Q51 (apo)","struct_title":"Crystal structure of a class I PreQ1 riboswitch aptamer (wild-type) complexed with a cognate ligand-derived photoaffinity probe","holo_pdb":"7E9I","ligand":"J0C","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"101","apo_pdb":"3Q51","apo_chain":"A","holo_len":32,"apo_len":32,"pocket_size":20,"thumb":{"holo":[[0.706,0.608],[0.734,0.526],[0.725,0.402],[0.652,0.302],[0.548,0.191],[0.461,0.047],[0.334,0.071],[0.223,0.152],[0.079,0.211],[0.146,0.309],[0.327,0.356],[0.263,0.555],[0.266,0.499],[0.313,0.383],[0.395,0.253],[0.521,0.183],[0.654,0.186],[0.761,0.261],[0.855,0.384],[0.907,0.468],[1.0,0.305],[0.822,0.344],[0.825,0.117],[0.749,0.008],[0.625,0.001],[0.503,0.0],[0.354,0.025],[0.285,0.099],[0.227,0.224],[0.17,0.328],[0.102,0.475],[0.032,0.451]],"apo":[[0.703,0.597],[0.734,0.521],[0.72,0.407],[0.647,0.305],[0.543,0.209],[0.462,0.066],[0.339,0.085],[0.223,0.157],[0.081,0.207],[0.141,0.307],[0.314,0.362],[0.293,0.535],[0.36,0.391],[0.353,0.45],[0.396,0.262],[0.524,0.187],[0.656,0.186],[0.762,0.257],[0.857,0.373],[0.898,0.464],[0.987,0.308],[0.82,0.344],[0.816,0.117],[0.742,0.003],[0.624,0.001],[0.497,0.013],[0.365,0.028],[0.282,0.103],[0.222,0.229],[0.162,0.338],[0.069,0.461],[0.0,0.432]]},"method":"X-ray","resolution":2.8,"rna_type":"Purine-compound riboswitch","rna_group":"Riboswitch","num_chains":1,"total_rna_len":33,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["internal loop","stem","single strand"],"rmsd":1.46,"host_chain_rmsd":1.46,"pocket_rmsd":1.8,"lig_bsa":387.2,"ligand_burial":0.737,"tm_score":0.704,"rg_apo":12.92,"rg_holo":13.04,"rg_delta":0.12,"bp_rewire_src":"dssr","bp_formed":3,"bp_broken":2,"bp_conserved":16,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":7,"maxd":6.5,"water":0,"hbonds":3,"mw":299.3,"logp":0.89,"thumb_img":true,"thumb_v":1785389624,"apo_alts":[],"n_apo_copies":0},{"id":"7EAF_SAM_A_B_101_pocket","title":"7EAF (SAM) vs 3IQP (apo)","struct_title":"Crystal structure of SAM-I riboswitch with the Actinomyces-1 k-turn","holo_pdb":"7EAF","ligand":"SAM","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"101","apo_pdb":"3IQP","apo_chain":"A","holo_len":94,"apo_len":94,"pocket_size":26,"thumb":{"holo":[[0.608,0.588],[0.562,0.655],[0.554,0.721],[0.566,0.741],[0.578,0.715],[0.594,0.666],[0.586,0.585],[0.549,0.513],[0.492,0.431],[0.608,0.436],[0.682,0.403],[0.74,0.349],[0.809,0.236],[0.843,0.122],[0.893,0.186],[0.917,0.166],[0.89,0.157],[0.83,0.14],[0.768,0.091],[0.668,0.103],[0.627,0.152],[0.595,0.219],[0.549,0.273],[0.534,0.393],[0.452,0.375],[0.366,0.336],[0.328,0.283],[0.351,0.242],[0.404,0.207],[0.476,0.188],[0.564,0.177],[0.624,0.125],[0.698,0.017],[0.682,0.038],[0.735,0.083],[0.673,0.157],[0.69,0.223],[0.765,0.255],[0.856,0.27],[0.92,0.27],[0.931,0.277],[0.889,0.306],[0.825,0.35],[0.756,0.409],[0.741,0.486],[0.755,0.57],[0.712,0.614],[0.786,0.656],[0.871,0.683],[0.919,0.698],[0.945,0.766],[0.96,0.693],[0.999,0.617],[0.972,0.582],[0.936,0.583],[0.864,0.578],[0.793,0.542],[0.735,0.492],[0.71,0.427],[0.723,0.342],[0.598,0.247],[0.524,0.272],[0.481,0.401],[0.505,0.433],[0.472,0.307],[0.387,0.326],[0.343,0.36],[0.311,0.412],[0.264,0.511],[0.219,0.551],[0.187,0.581],[0.156,0.55],[0.12,0.483],[0.084,0.412],[0.0,0.343],[0.073,0.31],[0.143,0.285],[0.19,0.337],[0.222,0.404],[0.253,0.483],[0.277,0.552],[0.306,0.59],[0.333,0.589],[0.364,0.553],[0.425,0.499],[0.503,0.479],[0.579,0.481],[0.65,0.528],[0.693,0.603],[0.707,0.683],[0.691,0.745],[0.662,0.763],[0.635,0.753],[0.676,0.704]],"apo":[[0.611,0.588],[0.575,0.652],[0.56,0.719],[0.569,0.738],[0.576,0.713],[0.59,0.663],[0.589,0.586],[0.55,0.507],[0.516,0.437],[0.624,0.455],[0.694,0.415],[0.744,0.362],[0.782,0.245],[0.85,0.188],[0.899,0.17],[0.92,0.155],[0.893,0.158],[0.826,0.139],[0.763,0.09],[0.668,0.11],[0.631,0.158],[0.604,0.222],[0.553,0.275],[0.534,0.382],[0.461,0.368],[0.363,0.331],[0.329,0.272],[0.345,0.236],[0.402,0.209],[0.479,0.191],[0.566,0.172],[0.616,0.115],[0.678,0.0],[0.677,0.009],[0.71,0.065],[0.665,0.154],[0.701,0.223],[0.777,0.249],[0.863,0.263],[0.922,0.265],[0.913,0.275],[0.879,0.295],[0.824,0.346],[0.768,0.407],[0.771,0.48],[0.692,0.535],[0.712,0.609],[0.776,0.661],[0.854,0.695],[0.909,0.707],[0.941,0.772],[0.952,0.697],[1.0,0.623],[0.963,0.599],[0.934,0.599],[0.87,0.589],[0.797,0.555],[0.747,0.495],[0.716,0.433],[0.721,0.346],[0.601,0.246],[0.525,0.268],[0.479,0.396],[0.518,0.426],[0.471,0.301],[0.386,0.324],[0.347,0.359],[0.321,0.406],[0.277,0.509],[0.231,0.555],[0.198,0.58],[0.161,0.552],[0.124,0.49],[0.086,0.425],[0.007,0.34],[0.078,0.305],[0.147,0.28],[0.195,0.338],[0.224,0.409],[0.255,0.488],[0.281,0.559],[0.315,0.591],[0.341,0.582],[0.374,0.548],[0.435,0.492],[0.508,0.47],[0.584,0.475],[0.648,0.526],[0.692,0.605],[0.704,0.683],[0.692,0.747],[0.668,0.76],[0.638,0.752],[0.642,0.717]]},"method":"X-ray","resolution":2.85,"rna_type":"Enzyme cofactor riboswitch","rna_group":"Riboswitch","num_chains":1,"total_rna_len":94,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":95,"global_identity":95,"pocket_motifs":["junction","internal loop","stem"],"rmsd":1.36,"host_chain_rmsd":1.36,"pocket_rmsd":1.36,"lig_bsa":469.6,"ligand_burial":0.881,"tm_score":0.92,"rg_apo":20.98,"rg_holo":21.07,"rg_delta":0.09,"bp_rewire_src":"dssr","bp_formed":4,"bp_broken":4,"bp_conserved":41,"bp_formed_wc":0,"bp_broken_wc":1,"bp_conserved_wc":30,"maxd":5.3,"water":0,"hbonds":6,"mw":398.4,"logp":-3.26,"thumb_img":true,"thumb_v":1785389624,"apo_alts":[],"n_apo_copies":0},{"id":"7EDM_GET_B_E_101_pocket","title":"7EDM (GET) vs 7EDN (apo)","struct_title":"Crystal structure of the eukaryotic ribosomal decoding site in complex with G418 and Hg(II)","holo_pdb":"7EDM","ligand":"GET","holo_chain":"B","holo_rna_chain":"B","lig_auth_chain":"B","nearest_rna_chain":"A","lig_resseq":"101","apo_pdb":"7EDN","apo_chain":"A","holo_len":21,"apo_len":22,"pocket_size":16,"thumb":{"holo":[[0.0,0.27],[0.075,0.199],[0.146,0.175],[0.216,0.151],[0.277,0.19],[0.326,0.266],[0.387,0.356],[0.442,0.412],[0.488,0.433],[0.519,0.403],[0.544,0.333],[0.569,0.243],[0.597,0.157],[0.642,0.096],[0.779,0.0],[0.841,0.038],[0.812,0.167],[0.843,0.267],[0.88,0.349],[0.916,0.42],[0.968,0.425]],"apo":[[0.002,0.425],[0.032,0.323],[0.069,0.234],[0.125,0.175],[0.193,0.147],[0.269,0.164],[0.337,0.225],[0.374,0.315],[0.41,0.383],[0.448,0.403],[0.493,0.388],[0.53,0.318],[0.577,0.238],[0.629,0.171],[0.691,0.129],[0.76,0.121],[0.857,0.053],[0.795,0.183],[0.836,0.287],[0.892,0.355],[0.951,0.382],[1.0,0.36]]},"method":"X-ray","resolution":2.81,"rna_type":"Ribosomal RNA","rna_group":"Protein synthesis","num_chains":2,"total_rna_len":43,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["internal loop","stem"],"rmsd":3.03,"host_chain_rmsd":2.68,"pocket_rmsd":3.11,"lig_bsa":432.4,"ligand_burial":0.663,"tm_score":0.285,"rg_apo":17.89,"rg_holo":18.04,"rg_delta":0.15,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":2,"bp_conserved":18,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":16,"maxd":7.4,"water":0,"hbonds":6,"mw":496.6,"logp":-5.61,"thumb_img":true,"thumb_v":1785488734,"apo_alts":[],"n_apo_copies":0},{"id":"7EDM_GET_B_F_102_pocket","title":"7EDM (GET) vs 7EDN (apo)","struct_title":"Crystal structure of the eukaryotic ribosomal decoding site in complex with G418 and Hg(II)","holo_pdb":"7EDM","ligand":"GET","holo_chain":"B","holo_rna_chain":"B","lig_auth_chain":"B","nearest_rna_chain":"B","lig_resseq":"102","apo_pdb":"7EDN","apo_chain":"A","holo_len":21,"apo_len":22,"pocket_size":16,"thumb":{"holo":[[0.0,0.27],[0.075,0.199],[0.146,0.175],[0.216,0.151],[0.277,0.19],[0.326,0.266],[0.387,0.356],[0.442,0.412],[0.488,0.433],[0.519,0.403],[0.544,0.333],[0.569,0.243],[0.597,0.157],[0.642,0.096],[0.779,0.0],[0.841,0.038],[0.812,0.167],[0.843,0.267],[0.88,0.349],[0.916,0.42],[0.968,0.425]],"apo":[[0.002,0.425],[0.032,0.323],[0.069,0.234],[0.125,0.175],[0.193,0.147],[0.269,0.164],[0.337,0.225],[0.374,0.315],[0.41,0.383],[0.448,0.403],[0.493,0.388],[0.53,0.318],[0.577,0.238],[0.629,0.171],[0.691,0.129],[0.76,0.121],[0.857,0.053],[0.795,0.183],[0.836,0.287],[0.892,0.355],[0.951,0.382],[1.0,0.36]]},"method":"X-ray","resolution":2.81,"rna_type":"Ribosomal RNA","rna_group":"Protein synthesis","num_chains":2,"total_rna_len":43,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["internal loop","stem"],"rmsd":3.03,"host_chain_rmsd":2.68,"pocket_rmsd":2.99,"lig_bsa":456.3,"ligand_burial":0.696,"tm_score":0.285,"rg_apo":17.89,"rg_holo":18.04,"rg_delta":0.15,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":2,"bp_conserved":18,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":16,"maxd":7.4,"water":0,"hbonds":6,"mw":496.6,"logp":-5.61,"thumb_img":true,"thumb_v":1785389625,"apo_alts":[],"n_apo_copies":0},{"id":"7MKT_MMP_A_B_101_pocket","title":"7MKT (MMP) vs 8TNS (apo)","struct_title":"Crystal structure of r(GU)11G-NMM complex","holo_pdb":"7MKT","ligand":"MMP","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"101","apo_pdb":"8TNS","apo_chain":"A","holo_len":23,"apo_len":24,"pocket_size":13,"thumb":{"holo":[[0.538,0.72],[0.661,0.87],[0.586,0.708],[0.616,0.649],[0.719,0.535],[0.926,0.5],[0.72,0.412],[0.865,0.291],[0.705,0.377],[0.644,0.336],[0.542,0.241],[0.559,0.026],[0.407,0.239],[0.277,0.088],[0.375,0.249],[0.333,0.315],[0.237,0.438],[0.014,0.392],[0.233,0.541],[0.086,0.672],[0.254,0.582],[0.318,0.634],[0.433,0.728]],"apo":[[0.518,0.74],[0.66,0.871],[0.58,0.712],[0.636,0.666],[0.733,0.535],[0.961,0.488],[0.735,0.436],[0.866,0.301],[0.723,0.363],[0.664,0.341],[0.529,0.229],[0.497,0.0],[0.433,0.217],[0.314,0.08],[0.369,0.24],[0.343,0.306],[0.224,0.434],[0.0,0.456],[0.218,0.521],[0.077,0.637],[0.239,0.585],[0.303,0.64],[0.427,0.743],[0.441,1.0]]},"method":"X-ray","resolution":1.97,"rna_type":"Quadruplex","rna_group":"Structural","num_chains":1,"total_rna_len":23,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":96,"pocket_motifs":["single strand"],"rmsd":1.19,"host_chain_rmsd":1.19,"pocket_rmsd":1.31,"lig_bsa":360.7,"ligand_burial":0.459,"tm_score":0.393,"rg_apo":11.39,"rg_holo":11.0,"rg_delta":-0.39,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":0,"bp_conserved":16,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":0,"maxd":2.3,"water":0,"hbonds":2,"mw":580.7,"logp":7.66,"thumb_img":true,"thumb_v":1785389624,"apo_alts":[],"n_apo_copies":0},{"id":"7QSH_HYJ_A_C_2702_pocket","title":"7QSH (HYJ) vs 7UCR (apo)","struct_title":"23S ribosomal RNA Sarcin Ricin Loop 27-nt fragment containing a Xanthosine residue at position 2648","holo_pdb":"7QSH","ligand":"HYJ","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"2702","apo_pdb":"7UCR","apo_chain":"A","holo_len":25,"apo_len":27,"pocket_size":6,"thumb":{"holo":[[0.178,0.42],[0.22,0.34],[0.251,0.234],[0.303,0.104],[0.399,0.046],[0.508,0.121],[0.606,0.205],[0.586,0.064],[0.641,0.054],[0.726,0.127],[0.822,0.21],[0.999,0.23],[0.935,0.314],[0.857,0.413],[0.749,0.363],[0.651,0.278],[0.558,0.209],[0.496,0.136],[0.416,0.042],[0.324,0.0],[0.239,0.022],[0.149,0.087],[0.086,0.196],[0.035,0.31],[0.0,0.388]],"apo":[[0.122,0.332],[0.158,0.419],[0.187,0.398],[0.213,0.338],[0.249,0.232],[0.302,0.105],[0.397,0.048],[0.508,0.121],[0.609,0.202],[0.586,0.065],[0.641,0.055],[0.726,0.13],[0.822,0.211],[1.0,0.23],[0.936,0.312],[0.858,0.413],[0.75,0.363],[0.652,0.278],[0.559,0.213],[0.495,0.139],[0.412,0.047],[0.322,0.0],[0.236,0.025],[0.148,0.09],[0.084,0.201],[0.037,0.309],[0.003,0.391]]},"method":"X-ray","resolution":0.86,"rna_type":"Ribosomal RNA","rna_group":"Protein synthesis","num_chains":1,"total_rna_len":25,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":96,"pocket_motifs":["stem","single strand"],"rmsd":0.31,"host_chain_rmsd":0.31,"pocket_rmsd":0.57,"lig_bsa":230.8,"ligand_burial":0.474,"tm_score":0.926,"rg_apo":13.44,"rg_holo":13.46,"rg_delta":0.02,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":2,"bp_conserved":11,"bp_formed_wc":0,"bp_broken_wc":1,"bp_conserved_wc":5,"maxd":1.3,"water":4,"hbonds":1,"mw":364.2,"logp":-2.45,"thumb_img":true,"thumb_v":1785389625,"apo_alts":[{"pdb":"1MSY","rmsd":1.25,"host_chain_rmsd":1.25,"apo_chain":"A","apo_len":27,"identity":92,"global_identity":89,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.496,"rg_delta":-0.23,"pocket_rmsd":1.36,"maxd":3.5,"bp_formed":0,"bp_broken":2,"bp_conserved":11},{"pdb":"1Q9A","rmsd":0.21,"host_chain_rmsd":0.21,"apo_chain":"A","apo_len":27,"identity":100,"global_identity":96,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.955,"rg_delta":-0.03,"pocket_rmsd":0.39,"maxd":0.8,"bp_formed":0,"bp_broken":1,"bp_conserved":11},{"pdb":"3DVZ","rmsd":0.14,"host_chain_rmsd":0.14,"apo_chain":"A","apo_len":27,"identity":100,"global_identity":96,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.966,"rg_delta":-0.01,"pocket_rmsd":0.23,"maxd":0.4,"bp_formed":0,"bp_broken":1,"bp_conserved":11},{"pdb":"480D","rmsd":0.27,"host_chain_rmsd":0.27,"apo_chain":"A","apo_len":27,"identity":100,"global_identity":96,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.907,"rg_delta":-0.17,"pocket_rmsd":0.33,"maxd":0.5,"bp_formed":0,"bp_broken":1,"bp_conserved":11},{"pdb":"483D","rmsd":0.15,"host_chain_rmsd":0.15,"apo_chain":"A","apo_len":27,"identity":100,"global_identity":96,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.96,"rg_delta":0.01,"pocket_rmsd":0.25,"maxd":0.4,"bp_formed":0,"bp_broken":1,"bp_conserved":11},{"pdb":"6Y0Y","rmsd":0.86,"host_chain_rmsd":0.86,"apo_chain":"A","apo_len":27,"identity":96,"global_identity":93,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.573,"rg_delta":-0.28,"pocket_rmsd":1.06,"maxd":1.7,"bp_formed":0,"bp_broken":1,"bp_conserved":11},{"pdb":"7EEM","rmsd":0.72,"host_chain_rmsd":0.72,"apo_chain":"A","apo_len":26,"identity":100,"global_identity":96,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.697,"rg_delta":-0.01,"pocket_rmsd":1.15,"maxd":2.1,"bp_formed":2,"bp_broken":2,"bp_conserved":9}],"n_apo_copies":0},{"id":"7TD7_VIB_A_E_104_pocket","title":"7TD7 (VIB) vs 8F4O (apo)","struct_title":"Crystal structure of an E. coli thiM riboswitch bound to thiamine, manganese ions","holo_pdb":"7TD7","ligand":"VIB","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"104","apo_pdb":"8F4O","apo_chain":"A","holo_len":75,"apo_len":72,"pocket_size":27,"thumb":{"holo":[[0.773,0.642],[0.77,0.565],[0.791,0.489],[0.816,0.428],[0.825,0.397],[0.813,0.396],[0.765,0.416],[0.692,0.434],[0.608,0.458],[0.533,0.431],[0.458,0.396],[0.422,0.326],[0.328,0.346],[0.255,0.318],[0.214,0.241],[0.184,0.157],[0.058,0.075],[0.121,0.113],[0.211,0.116],[0.274,0.118],[0.346,0.075],[0.326,0.08],[0.301,0.128],[0.268,0.204],[0.272,0.299],[0.319,0.371],[0.398,0.375],[0.501,0.39],[0.483,0.341],[0.395,0.303],[0.475,0.233],[0.512,0.245],[0.577,0.266],[0.551,0.341],[0.556,0.423],[0.591,0.479],[0.658,0.518],[0.654,0.635],[0.594,0.628],[0.539,0.495],[0.495,0.493],[0.446,0.519],[0.393,0.58],[0.331,0.62],[0.272,0.559],[0.187,0.503],[0.223,0.601],[0.178,0.625],[0.152,0.604],[0.152,0.532],[0.15,0.461],[0.156,0.382],[0.133,0.287],[0.175,0.324],[0.238,0.37],[0.297,0.478],[0.259,0.416],[0.261,0.505],[0.259,0.587],[0.272,0.648],[0.303,0.663],[0.392,0.665],[0.41,0.712],[0.457,0.681],[0.503,0.621],[0.552,0.571],[0.637,0.511],[0.75,0.534],[0.821,0.512],[0.876,0.488],[0.903,0.479],[0.904,0.496],[0.887,0.538],[1.0,0.529]],"apo":[[0.681,0.594],[0.764,0.519],[0.786,0.451],[0.825,0.398],[0.86,0.378],[0.845,0.388],[0.79,0.4],[0.717,0.424],[0.628,0.435],[0.557,0.395],[0.495,0.355],[0.458,0.286],[0.339,0.256],[0.338,0.0],[0.387,0.015],[0.361,0.041],[0.353,0.095],[0.337,0.184],[0.366,0.261],[0.432,0.306],[0.532,0.329],[0.521,0.285],[0.424,0.221],[0.506,0.194],[0.577,0.184],[0.645,0.186],[0.617,0.22],[0.583,0.294],[0.573,0.374],[0.605,0.44],[0.666,0.492],[0.676,0.586],[0.584,0.586],[0.5,0.617],[0.477,0.53],[0.554,0.447],[0.508,0.453],[0.464,0.484],[0.412,0.532],[0.354,0.577],[0.295,0.615],[0.232,0.616],[0.184,0.576],[0.085,0.623],[0.029,0.659],[0.0,0.673],[0.0,0.656],[0.102,0.615],[0.111,0.68],[0.1,0.728],[0.097,0.746],[0.111,0.723],[0.167,0.686],[0.256,0.658],[0.323,0.692],[0.419,0.666],[0.452,0.642],[0.507,0.587],[0.56,0.543],[0.65,0.482],[0.755,0.51],[0.825,0.509],[0.889,0.474],[0.92,0.465],[0.92,0.483]]},"method":"X-ray","resolution":2.95,"rna_type":"Enzyme cofactor riboswitch","rna_group":"Riboswitch","num_chains":1,"total_rna_len":78,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["internal loop","hairpin loop","bulge","stem","single strand"],"rmsd":10.27,"host_chain_rmsd":10.27,"pocket_rmsd":10.0,"lig_bsa":361.7,"ligand_burial":0.816,"tm_score":0.505,"rg_apo":23.62,"rg_holo":19.12,"rg_delta":-4.5,"bp_rewire_src":"dssr","bp_formed":10,"bp_broken":3,"bp_conserved":25,"bp_formed_wc":4,"bp_broken_wc":2,"bp_conserved_wc":17,"maxd":31.9,"water":0,"hbonds":1,"mw":265.4,"logp":0.61,"thumb_img":true,"thumb_v":1785389625,"apo_alts":[],"n_apo_copies":2},{"id":"7TDB_GMI_A_B_101_pocket","title":"7TDB (GMI) vs 8F4O (apo)","struct_title":"Crystal structure of the E. coli thiM riboswitch in complex with thiamine bisphosphonate, manganese ions","holo_pdb":"7TDB","ligand":"GMI","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"101","apo_pdb":"8F4O","apo_chain":"A","holo_len":79,"apo_len":72,"pocket_size":31,"thumb":{"holo":[[0.215,0.094],[0.218,0.17],[0.197,0.242],[0.17,0.298],[0.153,0.332],[0.165,0.34],[0.211,0.325],[0.281,0.307],[0.365,0.287],[0.437,0.32],[0.509,0.352],[0.542,0.42],[0.64,0.399],[0.716,0.421],[0.763,0.486],[0.788,0.572],[0.83,0.561],[0.918,0.655],[0.855,0.622],[0.756,0.619],[0.694,0.613],[0.637,0.661],[0.644,0.646],[0.682,0.593],[0.717,0.518],[0.702,0.428],[0.653,0.363],[0.576,0.351],[0.474,0.345],[0.491,0.394],[0.578,0.44],[0.492,0.508],[0.438,0.499],[0.328,0.546],[0.402,0.464],[0.425,0.391],[0.422,0.315],[0.384,0.261],[0.32,0.224],[0.329,0.108],[0.394,0.116],[0.482,0.052],[0.438,0.249],[0.479,0.252],[0.519,0.23],[0.573,0.179],[0.641,0.141],[0.69,0.209],[0.766,0.271],[0.742,0.162],[0.782,0.131],[0.813,0.137],[0.818,0.192],[0.812,0.262],[0.812,0.341],[0.84,0.438],[0.792,0.407],[0.735,0.367],[0.663,0.274],[0.713,0.308],[0.716,0.225],[0.71,0.153],[0.704,0.099],[0.664,0.091],[0.586,0.076],[0.568,0.046],[0.529,0.074],[0.472,0.134],[0.421,0.179],[0.335,0.234],[0.228,0.204],[0.157,0.221],[0.103,0.237],[0.08,0.242],[0.085,0.237],[0.109,0.204],[0.0,0.229]],"apo":[[0.141,0.331],[0.131,0.346],[0.144,0.353],[0.186,0.331],[0.252,0.324],[0.342,0.313],[0.413,0.344],[0.482,0.391],[0.513,0.464],[0.623,0.497],[0.689,0.536],[0.711,0.601],[0.69,0.683],[0.666,0.748],[0.642,0.773],[0.689,0.798],[0.674,0.599],[0.606,0.691],[0.565,0.722],[0.544,0.718],[0.577,0.682],[0.62,0.625],[0.639,0.548],[0.623,0.471],[0.555,0.435],[0.458,0.4],[0.466,0.448],[0.536,0.507],[0.448,0.543],[0.388,0.541],[0.319,0.529],[0.364,0.509],[0.405,0.438],[0.411,0.362],[0.373,0.299],[0.313,0.251],[0.318,0.137],[0.423,0.296],[0.463,0.29],[0.503,0.267],[0.553,0.222],[0.613,0.176],[0.675,0.135],[0.735,0.139],[0.769,0.18],[0.876,0.143],[0.94,0.111],[0.965,0.074],[0.969,0.068],[1.0,0.125],[0.998,0.043],[0.948,0.092],[0.879,0.124],[0.758,0.07],[0.859,0.03],[0.894,0.002],[0.905,0.0],[0.865,0.026],[0.786,0.048],[0.72,0.026],[0.655,0.041],[0.561,0.079],[0.514,0.11],[0.459,0.171],[0.411,0.215],[0.321,0.266],[0.218,0.229],[0.154,0.24],[0.091,0.271],[0.053,0.269],[0.06,0.251],[0.068,0.209]]},"method":"X-ray","resolution":2.56,"rna_type":"Enzyme cofactor riboswitch","rna_group":"Riboswitch","num_chains":1,"total_rna_len":79,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["junction","internal loop","hairpin loop","bulge","stem"],"rmsd":10.53,"host_chain_rmsd":10.53,"pocket_rmsd":10.11,"lig_bsa":482.8,"ligand_burial":0.812,"tm_score":0.49,"rg_apo":23.7,"rg_holo":19.3,"rg_delta":-4.4,"bp_rewire_src":"dssr","bp_formed":9,"bp_broken":2,"bp_conserved":26,"bp_formed_wc":4,"bp_broken_wc":2,"bp_conserved_wc":17,"maxd":32.4,"water":6,"hbonds":5,"mw":423.3,"logp":0.95,"thumb_img":true,"thumb_v":1785444685,"apo_alts":[],"n_apo_copies":2},{"id":"7TDC_GMI_A_B_101_pocket","title":"7TDC (GMI) vs 8F4O (apo)","struct_title":"Crystal structure of the E. coli thiM riboswitch in complex with thiamine bisphosphonate, calcium ions","holo_pdb":"7TDC","ligand":"GMI","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"101","apo_pdb":"8F4O","apo_chain":"A","holo_len":79,"apo_len":72,"pocket_size":32,"thumb":{"holo":[[0.214,0.094],[0.22,0.17],[0.198,0.243],[0.169,0.299],[0.152,0.333],[0.164,0.338],[0.21,0.324],[0.278,0.303],[0.364,0.285],[0.436,0.319],[0.508,0.351],[0.543,0.419],[0.641,0.395],[0.714,0.42],[0.759,0.484],[0.788,0.573],[0.832,0.56],[0.914,0.657],[0.851,0.625],[0.755,0.62],[0.691,0.611],[0.63,0.659],[0.64,0.646],[0.681,0.596],[0.717,0.516],[0.701,0.426],[0.651,0.364],[0.576,0.354],[0.476,0.345],[0.493,0.394],[0.579,0.44],[0.494,0.51],[0.441,0.5],[0.335,0.553],[0.402,0.466],[0.424,0.393],[0.422,0.316],[0.383,0.262],[0.319,0.222],[0.329,0.104],[0.399,0.114],[0.484,0.049],[0.439,0.248],[0.48,0.254],[0.518,0.229],[0.573,0.178],[0.64,0.139],[0.688,0.209],[0.763,0.268],[0.739,0.164],[0.782,0.13],[0.814,0.136],[0.817,0.192],[0.813,0.263],[0.816,0.343],[0.841,0.437],[0.794,0.406],[0.735,0.367],[0.665,0.268],[0.712,0.308],[0.714,0.225],[0.71,0.151],[0.704,0.102],[0.663,0.093],[0.585,0.073],[0.567,0.045],[0.527,0.075],[0.472,0.132],[0.42,0.175],[0.333,0.233],[0.228,0.202],[0.154,0.222],[0.102,0.236],[0.08,0.241],[0.085,0.236],[0.109,0.202],[0.0,0.228]],"apo":[[0.141,0.33],[0.13,0.345],[0.143,0.352],[0.185,0.33],[0.251,0.323],[0.342,0.312],[0.413,0.344],[0.481,0.39],[0.513,0.464],[0.622,0.497],[0.688,0.536],[0.711,0.601],[0.689,0.683],[0.665,0.748],[0.641,0.773],[0.688,0.798],[0.673,0.598],[0.605,0.69],[0.564,0.721],[0.543,0.718],[0.576,0.682],[0.619,0.625],[0.639,0.548],[0.623,0.471],[0.555,0.435],[0.458,0.399],[0.466,0.447],[0.535,0.507],[0.447,0.542],[0.387,0.541],[0.318,0.528],[0.363,0.508],[0.405,0.438],[0.41,0.362],[0.372,0.299],[0.312,0.251],[0.317,0.136],[0.423,0.295],[0.463,0.289],[0.503,0.267],[0.553,0.221],[0.613,0.175],[0.675,0.134],[0.735,0.139],[0.769,0.179],[0.876,0.143],[0.94,0.111],[0.965,0.074],[0.969,0.068],[1.0,0.125],[0.998,0.043],[0.948,0.093],[0.879,0.124],[0.758,0.07],[0.859,0.03],[0.894,0.002],[0.905,0.0],[0.865,0.026],[0.786,0.048],[0.72,0.026],[0.655,0.04],[0.56,0.078],[0.513,0.109],[0.459,0.17],[0.41,0.214],[0.32,0.265],[0.217,0.228],[0.154,0.239],[0.09,0.27],[0.052,0.268],[0.059,0.251],[0.068,0.209]]},"method":"X-ray","resolution":2.46,"rna_type":"Enzyme cofactor riboswitch","rna_group":"Riboswitch","num_chains":1,"total_rna_len":79,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["junction","internal loop","hairpin loop","bulge","stem"],"rmsd":10.5,"host_chain_rmsd":10.5,"pocket_rmsd":9.92,"lig_bsa":482.0,"ligand_burial":0.813,"tm_score":0.49,"rg_apo":23.7,"rg_holo":19.32,"rg_delta":-4.38,"bp_rewire_src":"dssr","bp_formed":10,"bp_broken":2,"bp_conserved":26,"bp_formed_wc":4,"bp_broken_wc":2,"bp_conserved_wc":17,"maxd":32.2,"water":5,"hbonds":5,"mw":423.3,"logp":0.95,"thumb_img":true,"thumb_v":1785444687,"apo_alts":[],"n_apo_copies":2},{"id":"7TZR_KWU_X_C_101_pocket","title":"7TZR (KWU) vs 8F4O (apo)","struct_title":"Crystal structure of the E. coli thiM riboswitch bound to N-methyl-1-(quinoxalin-6-yl)methanamine (compound 16)","holo_pdb":"7TZR","ligand":"KWU","holo_chain":"X","holo_rna_chain":"X","lig_auth_chain":"X","nearest_rna_chain":"X","lig_resseq":"101","apo_pdb":"8F4O","apo_chain":"A","holo_len":80,"apo_len":72,"pocket_size":22,"thumb":{"holo":[[0.187,0.605],[0.133,0.52],[0.089,0.469],[0.072,0.432],[0.108,0.424],[0.166,0.44],[0.248,0.469],[0.338,0.496],[0.428,0.482],[0.515,0.454],[0.562,0.387],[0.661,0.423],[0.747,0.415],[0.82,0.353],[0.9,0.352],[0.88,0.249],[0.858,0.16],[0.833,0.098],[0.899,0.112],[0.994,0.126],[0.94,0.173],[0.86,0.184],[0.78,0.173],[0.726,0.159],[0.717,0.146],[0.738,0.162],[0.762,0.224],[0.771,0.31],[0.739,0.409],[0.674,0.465],[0.596,0.463],[0.484,0.456],[0.51,0.406],[0.601,0.369],[0.519,0.284],[0.469,0.28],[0.427,0.308],[0.439,0.395],[0.417,0.471],[0.363,0.528],[0.284,0.559],[0.273,0.684],[0.342,0.689],[0.428,0.773],[0.502,0.651],[0.417,0.551],[0.461,0.558],[0.495,0.589],[0.541,0.652],[0.607,0.704],[0.677,0.642],[0.765,0.585],[0.728,0.699],[0.771,0.744],[0.806,0.739],[0.823,0.68],[0.83,0.599],[0.845,0.515],[0.89,0.418],[0.827,0.445],[0.755,0.476],[0.677,0.583],[0.725,0.536],[0.714,0.623],[0.7,0.704],[0.684,0.758],[0.634,0.76],[0.55,0.765],[0.458,0.844],[0.513,0.798],[0.466,0.758],[0.426,0.682],[0.38,0.627],[0.299,0.547],[0.184,0.573],[0.101,0.564],[0.036,0.554],[0.014,0.558],[0.015,0.572]],"apo":[[0.109,0.409],[0.1,0.387],[0.114,0.379],[0.154,0.408],[0.224,0.428],[0.32,0.458],[0.403,0.438],[0.487,0.403],[0.536,0.329],[0.661,0.316],[0.741,0.289],[0.779,0.224],[0.773,0.133],[0.76,0.056],[0.737,0.021],[0.792,0.0],[0.735,0.211],[0.68,0.098],[0.643,0.06],[0.621,0.062],[0.65,0.111],[0.686,0.183],[0.692,0.271],[0.659,0.35],[0.578,0.375],[0.466,0.395],[0.483,0.342],[0.569,0.289],[0.48,0.23],[0.416,0.223],[0.339,0.222],[0.384,0.255],[0.415,0.341],[0.406,0.424],[0.352,0.483],[0.277,0.521],[0.259,0.646],[0.406,0.496],[0.447,0.508],[0.484,0.537],[0.529,0.594],[0.585,0.656],[0.644,0.714],[0.712,0.724],[0.757,0.689],[0.866,0.749],[0.929,0.799],[0.95,0.847],[0.954,0.857],[1.0,0.805],[0.983,0.898],[0.937,0.829],[0.868,0.781],[0.726,0.816],[0.827,0.878],[0.859,0.912],[0.869,0.913],[0.83,0.874],[0.749,0.834],[0.671,0.841],[0.605,0.815],[0.509,0.753],[0.464,0.708],[0.417,0.631],[0.374,0.576],[0.287,0.504],[0.169,0.526],[0.102,0.502],[0.041,0.458],[0.0,0.456],[0.005,0.48],[0.007,0.529]]},"method":"X-ray","resolution":2.7,"rna_type":"Enzyme cofactor riboswitch","rna_group":"Riboswitch","num_chains":1,"total_rna_len":156,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":95,"pocket_motifs":["junction","internal loop","hairpin loop","bulge","stem"],"rmsd":11.0,"host_chain_rmsd":11.0,"pocket_rmsd":10.89,"lig_bsa":300.9,"ligand_burial":0.904,"tm_score":0.463,"rg_apo":23.41,"rg_holo":19.46,"rg_delta":-3.95,"bp_rewire_src":"dssr","bp_formed":12,"bp_broken":2,"bp_conserved":26,"bp_formed_wc":5,"bp_broken_wc":1,"bp_conserved_wc":18,"maxd":33.8,"water":0,"hbonds":2,"mw":173.2,"logp":1.35,"thumb_img":true,"thumb_v":1785451622,"apo_alts":[],"n_apo_copies":2},{"id":"7TZR_KWU_Y_G_101_pocket","title":"7TZR (KWU) vs 8F4O (apo)","struct_title":"Crystal structure of the E. coli thiM riboswitch bound to N-methyl-1-(quinoxalin-6-yl)methanamine (compound 16)","holo_pdb":"7TZR","ligand":"KWU","holo_chain":"Y","holo_rna_chain":"Y","lig_auth_chain":"Y","nearest_rna_chain":"Y","lig_resseq":"101","apo_pdb":"8F4O","apo_chain":"A","holo_len":80,"apo_len":72,"pocket_size":22,"thumb":{"holo":[[0.179,0.591],[0.116,0.524],[0.077,0.493],[0.064,0.48],[0.099,0.483],[0.167,0.508],[0.248,0.52],[0.333,0.532],[0.413,0.505],[0.491,0.467],[0.525,0.398],[0.621,0.418],[0.706,0.4],[0.767,0.331],[0.855,0.328],[0.814,0.224],[0.77,0.144],[0.725,0.086],[0.768,0.094],[0.846,0.101],[0.786,0.149],[0.704,0.15],[0.639,0.147],[0.606,0.149],[0.617,0.15],[0.661,0.161],[0.705,0.219],[0.723,0.303],[0.703,0.399],[0.646,0.46],[0.568,0.463],[0.462,0.474],[0.477,0.42],[0.56,0.377],[0.472,0.307],[0.423,0.313],[0.331,0.302],[0.381,0.341],[0.406,0.42],[0.397,0.5],[0.355,0.555],[0.286,0.597],[0.295,0.725],[0.366,0.729],[0.493,0.676],[0.412,0.573],[0.455,0.574],[0.491,0.597],[0.543,0.652],[0.614,0.696],[0.67,0.627],[0.738,0.562],[0.722,0.671],[0.772,0.709],[0.811,0.698],[0.816,0.639],[0.818,0.565],[0.821,0.484],[0.845,0.382],[0.789,0.421],[0.719,0.461],[0.654,0.576],[0.702,0.515],[0.708,0.604],[0.709,0.686],[0.696,0.737],[0.65,0.747],[0.571,0.762],[0.526,0.875],[0.543,0.799],[0.491,0.762],[0.438,0.703],[0.389,0.651],[0.303,0.584],[0.194,0.611],[0.117,0.619],[0.049,0.605],[0.019,0.593],[0.019,0.591]],"apo":[[0.097,0.485],[0.084,0.467],[0.095,0.458],[0.136,0.481],[0.205,0.49],[0.3,0.504],[0.376,0.473],[0.45,0.426],[0.486,0.349],[0.603,0.318],[0.675,0.279],[0.702,0.212],[0.683,0.126],[0.658,0.056],[0.63,0.027],[0.678,0.0],[0.655,0.209],[0.586,0.111],[0.546,0.078],[0.527,0.083],[0.563,0.123],[0.608,0.186],[0.627,0.268],[0.608,0.348],[0.535,0.384],[0.432,0.419],[0.44,0.368],[0.512,0.306],[0.418,0.264],[0.357,0.266],[0.284,0.277],[0.333,0.3],[0.375,0.376],[0.378,0.456],[0.336,0.521],[0.27,0.569],[0.271,0.69],[0.388,0.526],[0.428,0.532],[0.467,0.555],[0.517,0.603],[0.579,0.653],[0.644,0.699],[0.711,0.697],[0.749,0.657],[0.86,0.698],[0.929,0.735],[0.956,0.776],[0.963,0.784],[1.0,0.726],[0.999,0.815],[0.944,0.759],[0.872,0.723],[0.743,0.778],[0.847,0.821],[0.88,0.85],[0.889,0.851],[0.846,0.821],[0.763,0.795],[0.689,0.815],[0.624,0.799],[0.523,0.756],[0.472,0.721],[0.416,0.654],[0.368,0.608],[0.276,0.552],[0.168,0.59],[0.101,0.577],[0.037,0.544],[0.0,0.547],[0.01,0.567],[0.019,0.613]]},"method":"X-ray","resolution":2.7,"rna_type":"Enzyme cofactor riboswitch","rna_group":"Riboswitch","num_chains":1,"total_rna_len":156,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":95,"pocket_motifs":["junction","internal loop","hairpin loop","bulge","stem"],"rmsd":10.49,"host_chain_rmsd":10.49,"pocket_rmsd":10.74,"lig_bsa":276.4,"ligand_burial":0.86,"tm_score":0.469,"rg_apo":23.38,"rg_holo":19.06,"rg_delta":-4.32,"bp_rewire_src":"dssr","bp_formed":12,"bp_broken":4,"bp_conserved":24,"bp_formed_wc":5,"bp_broken_wc":1,"bp_conserved_wc":18,"maxd":33.4,"water":0,"hbonds":2,"mw":173.2,"logp":1.35,"thumb_img":true,"thumb_v":1785451623,"apo_alts":[],"n_apo_copies":2},{"id":"7TZS_KX3_X_C_101_pocket","title":"7TZS (KX3) vs 8F4O (apo)","struct_title":"Crystal structure of the E. coli thiM riboswitch in complex with quinoxalin-6-ylmethanamine (compound 17)","holo_pdb":"7TZS","ligand":"KX3","holo_chain":"X","holo_rna_chain":"X","lig_auth_chain":"X","nearest_rna_chain":"X","lig_resseq":"101","apo_pdb":"8F4O","apo_chain":"A","holo_len":80,"apo_len":72,"pocket_size":19,"thumb":{"holo":[[0.201,0.612],[0.144,0.539],[0.098,0.484],[0.084,0.448],[0.111,0.433],[0.171,0.439],[0.25,0.466],[0.339,0.493],[0.426,0.479],[0.514,0.453],[0.564,0.386],[0.66,0.424],[0.743,0.416],[0.816,0.352],[0.895,0.356],[0.872,0.255],[0.852,0.17],[0.827,0.104],[0.887,0.115],[0.979,0.122],[0.926,0.165],[0.841,0.172],[0.764,0.161],[0.717,0.156],[0.715,0.148],[0.737,0.16],[0.756,0.222],[0.769,0.311],[0.737,0.405],[0.672,0.464],[0.59,0.465],[0.483,0.458],[0.508,0.405],[0.595,0.369],[0.513,0.293],[0.474,0.285],[0.388,0.263],[0.427,0.309],[0.438,0.393],[0.416,0.471],[0.364,0.522],[0.286,0.555],[0.275,0.676],[0.345,0.694],[0.426,0.768],[0.495,0.663],[0.417,0.546],[0.464,0.555],[0.498,0.585],[0.543,0.641],[0.607,0.694],[0.678,0.634],[0.767,0.579],[0.725,0.691],[0.767,0.739],[0.803,0.736],[0.818,0.677],[0.828,0.601],[0.842,0.519],[0.882,0.418],[0.823,0.446],[0.75,0.478],[0.67,0.579],[0.722,0.535],[0.711,0.625],[0.696,0.707],[0.681,0.756],[0.633,0.753],[0.547,0.76],[0.442,0.833],[0.517,0.791],[0.471,0.75],[0.432,0.674],[0.387,0.616],[0.306,0.542],[0.191,0.572],[0.113,0.565],[0.047,0.556],[0.029,0.566],[0.033,0.596]],"apo":[[0.108,0.421],[0.097,0.4],[0.11,0.391],[0.15,0.419],[0.219,0.437],[0.315,0.464],[0.397,0.443],[0.48,0.406],[0.526,0.332],[0.651,0.316],[0.73,0.287],[0.767,0.223],[0.758,0.132],[0.743,0.056],[0.719,0.022],[0.772,0.0],[0.72,0.21],[0.663,0.1],[0.626,0.062],[0.605,0.066],[0.636,0.113],[0.673,0.184],[0.681,0.271],[0.65,0.351],[0.571,0.377],[0.46,0.399],[0.476,0.347],[0.559,0.292],[0.469,0.235],[0.406,0.23],[0.329,0.23],[0.375,0.263],[0.408,0.346],[0.401,0.429],[0.348,0.489],[0.274,0.529],[0.259,0.652],[0.402,0.5],[0.442,0.511],[0.479,0.539],[0.524,0.595],[0.581,0.655],[0.642,0.711],[0.709,0.72],[0.754,0.684],[0.863,0.741],[0.927,0.789],[0.949,0.836],[0.955,0.846],[1.0,0.794],[0.986,0.886],[0.938,0.819],[0.869,0.773],[0.729,0.811],[0.83,0.869],[0.861,0.902],[0.871,0.903],[0.831,0.865],[0.749,0.827],[0.671,0.836],[0.606,0.812],[0.509,0.753],[0.462,0.709],[0.414,0.634],[0.371,0.581],[0.284,0.511],[0.167,0.535],[0.101,0.513],[0.039,0.471],[0.0,0.471],[0.007,0.494],[0.01,0.543]]},"method":"X-ray","resolution":2.21,"rna_type":"Enzyme cofactor riboswitch","rna_group":"Riboswitch","num_chains":1,"total_rna_len":156,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":95,"pocket_motifs":["junction","internal loop","hairpin loop","bulge","stem"],"rmsd":10.53,"host_chain_rmsd":10.53,"pocket_rmsd":9.32,"lig_bsa":266.1,"ligand_burial":0.889,"tm_score":0.462,"rg_apo":23.38,"rg_holo":18.93,"rg_delta":-4.45,"bp_rewire_src":"dssr","bp_formed":13,"bp_broken":2,"bp_conserved":26,"bp_formed_wc":5,"bp_broken_wc":1,"bp_conserved_wc":18,"maxd":33.1,"water":1,"hbonds":3,"mw":159.2,"logp":1.09,"thumb_img":true,"thumb_v":1785451624,"apo_alts":[],"n_apo_copies":2},{"id":"7TZS_KX3_Y_L_101_pocket","title":"7TZS (KX3) vs 8F4O (apo)","struct_title":"Crystal structure of the E. coli thiM riboswitch in complex with quinoxalin-6-ylmethanamine (compound 17)","holo_pdb":"7TZS","ligand":"KX3","holo_chain":"Y","holo_rna_chain":"Y","lig_auth_chain":"Y","nearest_rna_chain":"Y","lig_resseq":"101","apo_pdb":"8F4O","apo_chain":"A","holo_len":80,"apo_len":72,"pocket_size":19,"thumb":{"holo":[[0.184,0.596],[0.13,0.529],[0.086,0.486],[0.075,0.463],[0.107,0.458],[0.174,0.472],[0.249,0.502],[0.336,0.52],[0.418,0.5],[0.498,0.464],[0.537,0.396],[0.636,0.421],[0.715,0.405],[0.781,0.338],[0.87,0.334],[0.834,0.237],[0.805,0.155],[0.766,0.093],[0.819,0.105],[0.902,0.116],[0.84,0.158],[0.758,0.159],[0.69,0.147],[0.644,0.143],[0.655,0.148],[0.689,0.16],[0.719,0.22],[0.739,0.305],[0.717,0.402],[0.654,0.46],[0.576,0.464],[0.469,0.469],[0.487,0.417],[0.571,0.373],[0.487,0.302],[0.437,0.305],[0.347,0.283],[0.393,0.334],[0.416,0.414],[0.405,0.494],[0.358,0.547],[0.286,0.587],[0.287,0.709],[0.358,0.72],[0.438,0.785],[0.497,0.675],[0.414,0.564],[0.46,0.57],[0.493,0.598],[0.54,0.652],[0.608,0.695],[0.669,0.63],[0.743,0.56],[0.722,0.677],[0.769,0.718],[0.805,0.712],[0.82,0.653],[0.823,0.577],[0.83,0.495],[0.857,0.395],[0.797,0.429],[0.73,0.467],[0.661,0.577],[0.709,0.524],[0.709,0.611],[0.705,0.692],[0.691,0.742],[0.645,0.75],[0.563,0.765],[0.514,0.88],[0.539,0.798],[0.489,0.763],[0.437,0.695],[0.389,0.642],[0.304,0.577],[0.193,0.593],[0.117,0.594],[0.049,0.581],[0.021,0.575],[0.019,0.581]],"apo":[[0.101,0.462],[0.088,0.443],[0.1,0.434],[0.141,0.459],[0.21,0.471],[0.306,0.49],[0.384,0.462],[0.461,0.419],[0.501,0.343],[0.62,0.317],[0.695,0.282],[0.726,0.216],[0.71,0.128],[0.689,0.056],[0.663,0.025],[0.713,0.0],[0.679,0.209],[0.614,0.107],[0.575,0.073],[0.556,0.077],[0.59,0.12],[0.632,0.185],[0.647,0.269],[0.623,0.349],[0.548,0.382],[0.442,0.412],[0.453,0.36],[0.529,0.301],[0.437,0.254],[0.375,0.253],[0.3,0.26],[0.348,0.287],[0.387,0.366],[0.386,0.447],[0.34,0.509],[0.271,0.555],[0.267,0.676],[0.393,0.517],[0.433,0.524],[0.471,0.549],[0.52,0.6],[0.58,0.654],[0.644,0.704],[0.71,0.706],[0.751,0.667],[0.861,0.713],[0.928,0.755],[0.954,0.798],[0.96,0.806],[1.0,0.751],[0.995,0.841],[0.942,0.781],[0.871,0.741],[0.738,0.79],[0.841,0.839],[0.873,0.869],[0.883,0.87],[0.84,0.837],[0.758,0.807],[0.682,0.823],[0.617,0.804],[0.518,0.755],[0.469,0.717],[0.416,0.647],[0.37,0.598],[0.279,0.537],[0.168,0.57],[0.101,0.554],[0.038,0.517],[0.0,0.519],[0.009,0.541],[0.016,0.588]]},"method":"X-ray","resolution":2.21,"rna_type":"Enzyme cofactor riboswitch","rna_group":"Riboswitch","num_chains":1,"total_rna_len":156,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":95,"pocket_motifs":["junction","internal loop","hairpin loop","bulge","stem"],"rmsd":10.51,"host_chain_rmsd":10.51,"pocket_rmsd":9.53,"lig_bsa":263.4,"ligand_burial":0.879,"tm_score":0.458,"rg_apo":23.38,"rg_holo":19.02,"rg_delta":-4.36,"bp_rewire_src":"dssr","bp_formed":11,"bp_broken":2,"bp_conserved":26,"bp_formed_wc":5,"bp_broken_wc":1,"bp_conserved_wc":18,"maxd":33.5,"water":0,"hbonds":3,"mw":159.2,"logp":1.09,"thumb_img":true,"thumb_v":1785451625,"apo_alts":[],"n_apo_copies":2},{"id":"7TZT_KXC_A_E_104_pocket","title":"7TZT (KXC) vs 8F4O (apo)","struct_title":"Crystal structure of the E. coli thiM riboswitch in complex with N1,N1-dimethyl-N2-(quinoxalin-6-ylmethyl)ethane-1,2-diamine (linked compound 37)","holo_pdb":"7TZT","ligand":"KXC","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"104","apo_pdb":"8F4O","apo_chain":"A","holo_len":79,"apo_len":72,"pocket_size":19,"thumb":{"holo":[[0.231,0.634],[0.235,0.554],[0.216,0.476],[0.193,0.417],[0.179,0.386],[0.196,0.385],[0.246,0.405],[0.316,0.427],[0.4,0.452],[0.474,0.427],[0.548,0.391],[0.581,0.326],[0.675,0.339],[0.753,0.309],[0.797,0.237],[0.815,0.155],[0.87,0.158],[0.942,0.072],[0.878,0.101],[0.807,0.117],[0.733,0.118],[0.676,0.079],[0.679,0.068],[0.708,0.122],[0.739,0.198],[0.733,0.297],[0.685,0.365],[0.611,0.362],[0.508,0.385],[0.521,0.328],[0.612,0.29],[0.526,0.22],[0.493,0.231],[0.396,0.167],[0.435,0.259],[0.456,0.336],[0.45,0.416],[0.413,0.473],[0.349,0.514],[0.346,0.634],[0.413,0.628],[0.507,0.678],[0.517,0.574],[0.467,0.485],[0.514,0.488],[0.558,0.519],[0.61,0.576],[0.671,0.618],[0.727,0.558],[0.816,0.515],[0.782,0.6],[0.822,0.627],[0.853,0.607],[0.853,0.533],[0.867,0.466],[0.852,0.383],[0.881,0.284],[0.834,0.324],[0.769,0.366],[0.708,0.487],[0.746,0.414],[0.748,0.498],[0.744,0.579],[0.732,0.641],[0.7,0.671],[0.616,0.661],[0.528,0.741],[0.595,0.707],[0.548,0.681],[0.5,0.615],[0.453,0.57],[0.37,0.502],[0.256,0.526],[0.188,0.51],[0.13,0.481],[0.101,0.469],[0.1,0.485],[0.115,0.526],[0.0,0.527]],"apo":[[0.32,0.587],[0.239,0.511],[0.218,0.442],[0.18,0.388],[0.146,0.366],[0.16,0.377],[0.215,0.389],[0.288,0.415],[0.377,0.428],[0.449,0.39],[0.511,0.351],[0.55,0.283],[0.67,0.256],[0.677,0.0],[0.628,0.015],[0.653,0.041],[0.66,0.096],[0.674,0.185],[0.643,0.262],[0.576,0.305],[0.476,0.326],[0.488,0.281],[0.586,0.219],[0.505,0.19],[0.434,0.178],[0.365,0.179],[0.393,0.214],[0.425,0.288],[0.433,0.369],[0.399,0.435],[0.337,0.485],[0.325,0.579],[0.417,0.581],[0.501,0.615],[0.526,0.528],[0.451,0.443],[0.496,0.449],[0.539,0.481],[0.59,0.53],[0.647,0.577],[0.706,0.616],[0.768,0.619],[0.817,0.581],[0.915,0.63],[0.971,0.668],[1.0,0.683],[1.0,0.666],[0.899,0.623],[0.888,0.688],[0.899,0.736],[0.901,0.754],[0.887,0.729],[0.832,0.691],[0.743,0.661],[0.675,0.693],[0.58,0.664],[0.547,0.639],[0.493,0.583],[0.441,0.538],[0.353,0.474],[0.247,0.5],[0.177,0.498],[0.115,0.462],[0.084,0.452],[0.083,0.471]]},"method":"X-ray","resolution":2.96,"rna_type":"Enzyme cofactor riboswitch","rna_group":"Riboswitch","num_chains":1,"total_rna_len":79,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["junction","internal loop","hairpin loop","bulge","stem"],"rmsd":10.4,"host_chain_rmsd":10.4,"pocket_rmsd":9.47,"lig_bsa":229.3,"ligand_burial":0.824,"tm_score":0.5,"rg_apo":23.66,"rg_holo":19.35,"rg_delta":-4.31,"bp_rewire_src":"dssr","bp_formed":10,"bp_broken":3,"bp_conserved":25,"bp_formed_wc":4,"bp_broken_wc":2,"bp_conserved_wc":17,"maxd":33.0,"water":0,"hbonds":1,"mw":230.3,"logp":1.28,"thumb_img":true,"thumb_v":1785389625,"apo_alts":[],"n_apo_copies":2},{"id":"7TZU_KWL_A_B_101_pocket","title":"7TZU (KWL) vs 8F4O (apo)","struct_title":"Crystal structure of the E. coli thiM riboswitch bound to 1-(4-(piperazin-1-yl)pyridin-3-yl)-N-(quinoxalin-6-ylmethyl)methanamine (linked compound 38)","holo_pdb":"7TZU","ligand":"KWL","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"101","apo_pdb":"8F4O","apo_chain":"A","holo_len":79,"apo_len":72,"pocket_size":26,"thumb":{"holo":[[0.228,0.121],[0.233,0.199],[0.216,0.276],[0.191,0.339],[0.18,0.366],[0.199,0.365],[0.248,0.346],[0.314,0.322],[0.399,0.301],[0.476,0.327],[0.545,0.362],[0.576,0.434],[0.675,0.419],[0.75,0.447],[0.8,0.519],[0.816,0.597],[0.866,0.592],[0.941,0.687],[0.876,0.662],[0.807,0.644],[0.728,0.641],[0.665,0.672],[0.671,0.689],[0.707,0.633],[0.742,0.559],[0.736,0.462],[0.686,0.395],[0.609,0.389],[0.504,0.372],[0.522,0.423],[0.612,0.464],[0.527,0.527],[0.488,0.524],[0.388,0.592],[0.43,0.496],[0.457,0.419],[0.453,0.338],[0.414,0.28],[0.349,0.237],[0.345,0.122],[0.414,0.127],[0.51,0.089],[0.514,0.174],[0.47,0.268],[0.514,0.266],[0.553,0.233],[0.606,0.175],[0.668,0.132],[0.727,0.189],[0.813,0.232],[0.782,0.147],[0.822,0.126],[0.851,0.145],[0.849,0.214],[0.86,0.285],[0.852,0.374],[0.882,0.472],[0.832,0.435],[0.766,0.393],[0.704,0.273],[0.747,0.342],[0.752,0.253],[0.75,0.179],[0.734,0.112],[0.698,0.078],[0.616,0.091],[0.527,0.011],[0.594,0.043],[0.549,0.072],[0.497,0.138],[0.451,0.182],[0.368,0.247],[0.255,0.224],[0.187,0.243],[0.127,0.275],[0.101,0.286],[0.099,0.267],[0.118,0.228],[0.0,0.229]],"apo":[[0.318,0.166],[0.238,0.242],[0.217,0.312],[0.178,0.365],[0.144,0.387],[0.158,0.376],[0.213,0.364],[0.286,0.338],[0.375,0.325],[0.447,0.363],[0.51,0.402],[0.548,0.471],[0.669,0.498],[0.676,0.754],[0.626,0.739],[0.652,0.713],[0.659,0.659],[0.673,0.569],[0.642,0.492],[0.575,0.449],[0.474,0.428],[0.486,0.472],[0.585,0.534],[0.503,0.564],[0.432,0.575],[0.363,0.574],[0.391,0.539],[0.423,0.465],[0.431,0.384],[0.398,0.319],[0.336,0.268],[0.324,0.174],[0.416,0.172],[0.5,0.139],[0.525,0.225],[0.449,0.31],[0.494,0.304],[0.537,0.272],[0.589,0.223],[0.646,0.176],[0.705,0.137],[0.767,0.134],[0.817,0.172],[0.915,0.123],[0.971,0.086],[0.999,0.071],[1.0,0.088],[0.899,0.131],[0.888,0.066],[0.899,0.018],[0.901,0.0],[0.886,0.024],[0.831,0.063],[0.743,0.092],[0.675,0.06],[0.579,0.088],[0.546,0.114],[0.492,0.17],[0.44,0.215],[0.351,0.278],[0.245,0.253],[0.176,0.255],[0.113,0.291],[0.082,0.301],[0.081,0.282]]},"method":"X-ray","resolution":2.87,"rna_type":"Enzyme cofactor riboswitch","rna_group":"Riboswitch","num_chains":1,"total_rna_len":79,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["junction","internal loop","hairpin loop","bulge","stem"],"rmsd":10.37,"host_chain_rmsd":10.37,"pocket_rmsd":9.76,"lig_bsa":413.2,"ligand_burial":0.775,"tm_score":0.503,"rg_apo":23.66,"rg_holo":19.38,"rg_delta":-4.28,"bp_rewire_src":"dssr","bp_formed":11,"bp_broken":2,"bp_conserved":26,"bp_formed_wc":4,"bp_broken_wc":2,"bp_conserved_wc":17,"maxd":32.8,"water":0,"hbonds":4,"mw":334.4,"logp":1.72,"thumb_img":true,"thumb_v":1785389625,"apo_alts":[],"n_apo_copies":2},{"id":"7YC8_GTP_N_B_501_pocket","title":"7YC8 (GTP) vs 7XSN (apo)","struct_title":"Cryo-EM structure of Tetrahymena ribozyme conformation 1 undergoing the first-step self-splicing","holo_pdb":"7YC8","ligand":"GTP","holo_chain":"N","holo_rna_chain":"N","lig_auth_chain":"N","nearest_rna_chain":"N","lig_resseq":"501","apo_pdb":"7XSN","apo_chain":"N","holo_len":388,"apo_len":387,"pocket_size":21,"thumb":{"holo":[[0.066,0.263],[0.041,0.232],[0.035,0.201],[0.051,0.164],[0.076,0.125],[0.118,0.122],[0.162,0.12],[0.205,0.135],[0.231,0.154],[0.236,0.172],[0.229,0.17],[0.211,0.15],[0.207,0.106],[0.215,0.065],[0.233,0.033],[0.261,0.005],[0.298,0.0],[0.342,0.014],[0.377,0.041],[0.382,0.033],[0.415,0.021],[0.39,0.008],[0.368,0.047],[0.35,0.088],[0.355,0.111],[0.352,0.114],[0.344,0.1],[0.324,0.072],[0.288,0.053],[0.246,0.032],[0.209,0.031],[0.176,0.05],[0.151,0.093],[0.148,0.135],[0.153,0.172],[0.13,0.219],[0.133,0.246],[0.156,0.285],[0.163,0.322],[0.156,0.356],[0.123,0.377],[0.075,0.385],[0.035,0.399],[0.008,0.405],[0.001,0.412],[0.022,0.428],[0.04,0.455],[0.081,0.484],[0.061,0.512],[0.124,0.5],[0.132,0.523],[0.191,0.539],[0.246,0.562],[0.259,0.594],[0.234,0.596],[0.203,0.578],[0.18,0.543],[0.152,0.511],[0.145,0.487],[0.139,0.484],[0.123,0.459],[0.108,0.425],[0.071,0.391],[0.04,0.362],[0.024,0.344],[0.018,0.33],[0.032,0.312],[0.061,0.325],[0.107,0.329],[0.146,0.318],[0.183,0.301],[0.196,0.269],[0.181,0.236],[0.193,0.211],[0.203,0.24],[0.185,0.283],[0.191,0.325],[0.21,0.358],[0.24,0.379],[0.284,0.382],[0.327,0.373],[0.367,0.391],[0.396,0.388],[0.424,0.358],[0.442,0.351],[0.496,0.322],[0.526,0.289],[0.522,0.252],[0.516,0.209],[0.499,0.172],[0.489,0.158],[0.479,0.172],[0.45,0.152],[0.463,0.164],[0.494,0.185],[0.537,0.2],[0.578,0.199],[0.617,0.185],[0.641,0.15],[0.653,0.107],[0.67,0.057],[0.677,0.069],[0.668,0.109],[0.686,0.159],[0.628,0.131],[0.6,0.099],[0.594,0.064],[0.608,0.043],[0.588,0.006],[0.652,0.023],[0.683,0.042],[0.701,0.077],[0.69,0.114],[0.667,0.165],[0.638,0.184],[0.601,0.18],[0.568,0.163],[0.54,0.194],[0.494,0.197],[0.462,0.186],[0.444,0.177],[0.446,0.178],[0.465,0.189],[0.492,0.212],[0.516,0.252],[0.507,0.287],[0.507,0.329],[0.481,0.357],[0.439,0.366],[0.391,0.382],[0.38,0.346],[0.378,0.33],[0.411,0.319],[0.453,0.318],[0.495,0.31],[0.532,0.291],[0.552,0.255],[0.548,0.214],[0.528,0.176],[0.497,0.145],[0.477,0.13],[0.487,0.133],[0.515,0.127],[0.517,0.083],[0.492,0.056],[0.461,0.09],[0.468,0.121],[0.402,0.132],[0.401,0.125],[0.424,0.103],[0.381,0.09],[0.396,0.043],[0.437,0.018],[0.479,0.015],[0.515,0.041],[0.52,0.077],[0.578,0.094],[0.607,0.035],[0.56,0.078],[0.557,0.108],[0.565,0.149],[0.525,0.176],[0.518,0.22],[0.531,0.243],[0.564,0.178],[0.612,0.178],[0.563,0.137],[0.624,0.153],[0.668,0.147],[0.701,0.119],[0.712,0.08],[0.694,0.045],[0.666,0.016],[0.634,0.018],[0.617,0.037],[0.614,0.049],[0.612,0.055],[0.567,0.063],[0.581,0.062],[0.593,0.082],[0.596,0.124],[0.592,0.167],[0.576,0.206],[0.536,0.227],[0.498,0.217],[0.444,0.218],[0.431,0.203],[0.425,0.18],[0.384,0.161],[0.435,0.195],[0.455,0.197],[0.477,0.22],[0.486,0.254],[0.479,0.294],[0.451,0.327],[0.42,0.349],[0.368,0.371],[0.327,0.366],[0.309,0.342],[0.308,0.316],[0.32,0.307],[0.338,0.316],[0.345,0.349],[0.334,0.388],[0.382,0.415],[0.37,0.453],[0.332,0.471],[0.288,0.477],[0.244,0.473],[0.218,0.463],[0.21,0.453],[0.223,0.459],[0.25,0.475],[0.285,0.496],[0.288,0.541],[0.256,0.542],[0.291,0.584],[0.323,0.54],[0.323,0.496],[0.31,0.457],[0.28,0.421],[0.253,0.402],[0.239,0.397],[0.243,0.405],[0.267,0.418],[0.308,0.423],[0.348,0.409],[0.38,0.444],[0.392,0.384],[0.396,0.348],[0.384,0.309],[0.365,0.294],[0.36,0.303],[0.354,0.287],[0.35,0.255],[0.385,0.309],[0.436,0.316],[0.462,0.285],[0.44,0.267],[0.45,0.315],[0.468,0.315],[0.512,0.332],[0.485,0.368],[0.465,0.407],[0.426,0.428],[0.381,0.432],[0.34,0.411],[0.329,0.374],[0.315,0.328],[0.315,0.283],[0.332,0.298],[0.325,0.309],[0.293,0.326],[0.251,0.329],[0.209,0.339],[0.162,0.324],[0.154,0.287],[0.153,0.248],[0.169,0.204],[0.185,0.167],[0.193,0.149],[0.2,0.146],[0.191,0.16],[0.164,0.18],[0.126,0.2],[0.084,0.21],[0.064,0.181],[0.025,0.201],[0.036,0.174],[0.061,0.188],[0.081,0.225],[0.117,0.243],[0.16,0.241],[0.2,0.223],[0.231,0.2],[0.244,0.187],[0.248,0.186],[0.252,0.209],[0.242,0.261],[0.276,0.207],[0.327,0.218],[0.35,0.248],[0.373,0.29],[0.431,0.262],[0.408,0.323],[0.351,0.33],[0.345,0.372],[0.372,0.404],[0.411,0.436],[0.45,0.429],[0.481,0.4],[0.508,0.368],[0.509,0.33],[0.562,0.344],[0.601,0.339],[0.623,0.361],[0.651,0.387],[0.666,0.378],[0.666,0.345],[0.651,0.304],[0.64,0.255],[0.646,0.222],[0.679,0.194],[0.643,0.204],[0.609,0.228],[0.593,0.251],[0.585,0.268],[0.59,0.302],[0.599,0.345],[0.612,0.388],[0.592,0.435],[0.564,0.466],[0.548,0.506],[0.535,0.548],[0.526,0.576],[0.51,0.586],[0.492,0.573],[0.47,0.549],[0.439,0.521],[0.41,0.502],[0.387,0.458],[0.36,0.464],[0.336,0.485],[0.31,0.52],[0.28,0.537],[0.207,0.51],[0.2,0.479],[0.212,0.47],[0.227,0.495],[0.253,0.53],[0.27,0.566],[0.291,0.588],[0.315,0.589],[0.343,0.571],[0.369,0.539],[0.391,0.526],[0.412,0.478],[0.442,0.453],[0.47,0.458],[0.497,0.486],[0.526,0.519],[0.554,0.548],[0.572,0.567],[0.584,0.571],[0.599,0.543],[0.606,0.519],[0.677,0.51],[0.624,0.48],[0.642,0.435],[0.676,0.418],[0.714,0.42],[0.754,0.44],[0.782,0.472],[0.797,0.507],[0.802,0.531],[0.808,0.519],[0.797,0.514],[0.804,0.476],[0.824,0.439],[0.854,0.401],[0.888,0.389],[0.919,0.403],[0.934,0.44],[0.972,0.477],[0.948,0.496],[0.932,0.51],[0.916,0.484],[0.897,0.441],[0.864,0.408],[0.831,0.4],[0.787,0.402],[0.758,0.435],[0.745,0.473],[0.741,0.52],[0.741,0.541],[0.744,0.543],[0.743,0.525],[0.729,0.493],[0.699,0.461],[0.661,0.436],[0.624,0.434],[0.61,0.417],[0.625,0.422],[0.608,0.422],[0.571,0.421],[0.526,0.403],[0.509,0.41],[0.498,0.35]],"apo":[[0.084,0.24],[0.052,0.265],[0.092,0.26],[0.127,0.238],[0.142,0.195],[0.157,0.16],[0.169,0.129],[0.192,0.114],[0.225,0.144],[0.225,0.169],[0.22,0.173],[0.216,0.148],[0.209,0.114],[0.213,0.072],[0.234,0.037],[0.259,0.01],[0.296,0.001],[0.336,0.012],[0.372,0.037],[0.385,0.028],[0.41,0.017],[0.386,0.013],[0.365,0.05],[0.353,0.09],[0.353,0.113],[0.355,0.114],[0.347,0.096],[0.326,0.068],[0.291,0.048],[0.251,0.029],[0.214,0.029],[0.181,0.049],[0.159,0.086],[0.15,0.13],[0.151,0.168],[0.129,0.211],[0.138,0.241],[0.153,0.281],[0.159,0.317],[0.149,0.345],[0.12,0.363],[0.079,0.372],[0.037,0.38],[0.009,0.389],[0.0,0.403],[0.015,0.421],[0.037,0.451],[0.072,0.478],[0.087,0.514],[0.115,0.498],[0.149,0.524],[0.191,0.528],[0.237,0.573],[0.249,0.592],[0.232,0.591],[0.204,0.572],[0.179,0.533],[0.157,0.504],[0.145,0.479],[0.139,0.476],[0.119,0.456],[0.099,0.425],[0.063,0.393],[0.038,0.363],[0.018,0.341],[0.032,0.325],[0.007,0.317],[0.05,0.318],[0.095,0.316],[0.136,0.308],[0.173,0.297],[0.194,0.271],[0.182,0.235],[0.193,0.204],[0.199,0.237],[0.185,0.281],[0.19,0.322],[0.207,0.356],[0.237,0.372],[0.279,0.374],[0.323,0.372],[0.36,0.387],[0.393,0.381],[0.425,0.354],[0.446,0.35],[0.497,0.328],[0.525,0.291],[0.52,0.257],[0.515,0.21],[0.503,0.174],[0.487,0.157],[0.477,0.163],[0.453,0.155],[0.465,0.167],[0.493,0.188],[0.533,0.202],[0.573,0.203],[0.612,0.191],[0.633,0.154],[0.645,0.11],[0.659,0.058],[0.669,0.066],[0.668,0.11],[0.678,0.158],[0.626,0.137],[0.599,0.1],[0.593,0.064],[0.606,0.042],[0.582,0.003],[0.646,0.02],[0.681,0.039],[0.701,0.072],[0.695,0.112],[0.676,0.157],[0.645,0.182],[0.61,0.179],[0.573,0.164],[0.538,0.201],[0.494,0.206],[0.462,0.193],[0.449,0.178],[0.453,0.177],[0.472,0.188],[0.497,0.215],[0.516,0.252],[0.518,0.292],[0.512,0.333],[0.481,0.361],[0.44,0.37],[0.393,0.391],[0.38,0.356],[0.377,0.334],[0.412,0.32],[0.453,0.322],[0.496,0.313],[0.532,0.294],[0.552,0.26],[0.552,0.218],[0.536,0.177],[0.511,0.147],[0.488,0.135],[0.493,0.139],[0.516,0.132],[0.516,0.09],[0.491,0.056],[0.463,0.092],[0.474,0.135],[0.406,0.133],[0.401,0.127],[0.425,0.103],[0.385,0.092],[0.397,0.044],[0.433,0.019],[0.479,0.017],[0.512,0.046],[0.525,0.077],[0.586,0.093],[0.611,0.033],[0.564,0.079],[0.56,0.111],[0.566,0.15],[0.528,0.175],[0.517,0.218],[0.538,0.239],[0.564,0.178],[0.614,0.174],[0.569,0.142],[0.631,0.157],[0.673,0.146],[0.701,0.116],[0.709,0.074],[0.693,0.038],[0.663,0.017],[0.633,0.02],[0.607,0.036],[0.603,0.044],[0.596,0.058],[0.545,0.047],[0.574,0.063],[0.591,0.085],[0.593,0.124],[0.588,0.168],[0.571,0.208],[0.535,0.228],[0.493,0.22],[0.441,0.217],[0.43,0.202],[0.429,0.18],[0.386,0.16],[0.436,0.19],[0.459,0.198],[0.48,0.222],[0.489,0.258],[0.478,0.298],[0.448,0.328],[0.406,0.344],[0.363,0.372],[0.322,0.367],[0.308,0.338],[0.307,0.313],[0.32,0.307],[0.342,0.318],[0.35,0.352],[0.337,0.392],[0.379,0.42],[0.361,0.455],[0.324,0.473],[0.281,0.476],[0.241,0.469],[0.217,0.457],[0.211,0.445],[0.229,0.454],[0.25,0.468],[0.26,0.508],[0.276,0.548],[0.248,0.588],[0.287,0.578],[0.321,0.555],[0.315,0.513],[0.313,0.466],[0.289,0.43],[0.259,0.408],[0.242,0.399],[0.243,0.402],[0.261,0.414],[0.298,0.424],[0.343,0.415],[0.375,0.445],[0.39,0.391],[0.393,0.347],[0.384,0.309],[0.37,0.298],[0.359,0.305],[0.355,0.283],[0.349,0.255],[0.385,0.307],[0.429,0.314],[0.462,0.284],[0.442,0.27],[0.447,0.319],[0.471,0.317],[0.512,0.338],[0.486,0.364],[0.465,0.407],[0.426,0.426],[0.382,0.429],[0.344,0.407],[0.322,0.374],[0.314,0.328],[0.312,0.286],[0.332,0.3],[0.324,0.315],[0.29,0.323],[0.249,0.331],[0.206,0.336],[0.164,0.325],[0.15,0.287],[0.156,0.244],[0.174,0.198],[0.19,0.162],[0.198,0.148],[0.199,0.149],[0.185,0.162],[0.159,0.183],[0.122,0.206],[0.082,0.211],[0.052,0.19],[0.0,0.174],[0.026,0.169],[0.057,0.189],[0.078,0.224],[0.112,0.242],[0.153,0.242],[0.193,0.228],[0.224,0.205],[0.241,0.187],[0.248,0.182],[0.25,0.204],[0.241,0.254],[0.277,0.211],[0.321,0.22],[0.341,0.254],[0.373,0.295],[0.43,0.263],[0.408,0.326],[0.354,0.326],[0.344,0.367],[0.368,0.399],[0.404,0.43],[0.446,0.425],[0.481,0.403],[0.504,0.368],[0.514,0.338],[0.56,0.342],[0.602,0.352],[0.628,0.37],[0.654,0.389],[0.669,0.374],[0.666,0.346],[0.652,0.307],[0.639,0.268],[0.636,0.229],[0.667,0.185],[0.645,0.209],[0.61,0.223],[0.595,0.246],[0.586,0.266],[0.592,0.3],[0.603,0.34],[0.615,0.383],[0.592,0.432],[0.565,0.464],[0.55,0.505],[0.532,0.543],[0.521,0.571],[0.509,0.582],[0.491,0.572],[0.466,0.55],[0.439,0.517],[0.397,0.498],[0.385,0.458],[0.358,0.461],[0.323,0.484],[0.297,0.52],[0.266,0.544],[0.2,0.504],[0.2,0.475],[0.207,0.468],[0.227,0.488],[0.252,0.519],[0.274,0.552],[0.289,0.579],[0.308,0.587],[0.333,0.571],[0.358,0.543],[0.385,0.519],[0.414,0.471],[0.446,0.448],[0.471,0.457],[0.494,0.486],[0.522,0.521],[0.547,0.55],[0.567,0.568],[0.582,0.569],[0.594,0.542],[0.603,0.514],[0.66,0.497],[0.619,0.472],[0.644,0.433],[0.681,0.418],[0.719,0.423],[0.754,0.446],[0.784,0.481],[0.796,0.511],[0.802,0.527],[0.811,0.521],[0.807,0.499],[0.809,0.46],[0.841,0.421],[0.869,0.398],[0.901,0.39],[0.929,0.402],[0.951,0.435],[1.0,0.462],[0.971,0.494],[0.943,0.505],[0.917,0.485],[0.897,0.448],[0.864,0.413],[0.839,0.392],[0.792,0.39],[0.771,0.428],[0.759,0.472],[0.742,0.506],[0.737,0.532],[0.746,0.544],[0.74,0.528],[0.727,0.499],[0.702,0.467],[0.67,0.438],[0.631,0.43],[0.623,0.409],[0.623,0.423],[0.605,0.43],[0.575,0.418],[0.535,0.404],[0.491,0.415]]},"method":"EM","resolution":4.14,"rna_type":"Group I intron ribozyme","rna_group":"Catalytic (ribozyme)","num_chains":1,"total_rna_len":388,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":99,"pocket_motifs":["junction","internal loop","bulge","stem","single strand"],"rmsd":1.98,"host_chain_rmsd":1.98,"pocket_rmsd":0.81,"lig_bsa":308.4,"ligand_burial":0.517,"tm_score":0.97,"rg_apo":36.46,"rg_holo":36.47,"rg_delta":0.01,"bp_rewire_src":"dssr","bp_formed":21,"bp_broken":25,"bp_conserved":171,"bp_formed_wc":2,"bp_broken_wc":1,"bp_conserved_wc":121,"maxd":14.4,"water":0,"hbonds":4,"mw":523.2,"logp":-2.34,"thumb_img":true,"thumb_v":1785389625,"apo_alts":[{"pdb":"6WLS","rmsd":4.51,"host_chain_rmsd":4.51,"apo_chain":"A","apo_len":388,"identity":100,"global_identity":99,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.887,"rg_delta":-2.51,"pocket_rmsd":5.49,"maxd":20.8,"bp_formed":45,"bp_broken":31,"bp_conserved":147},{"pdb":"7EZ0","rmsd":2.36,"host_chain_rmsd":2.36,"apo_chain":"N","apo_len":387,"identity":100,"global_identity":98,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.953,"rg_delta":-1.05,"pocket_rmsd":0.94,"maxd":13.8,"bp_formed":27,"bp_broken":21,"bp_conserved":165},{"pdb":"7R6N","rmsd":2.5,"host_chain_rmsd":2.5,"apo_chain":"A","apo_len":354,"identity":99,"global_identity":94,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.878,"rg_delta":-0.33,"pocket_rmsd":0.86,"maxd":15.3,"bp_formed":60,"bp_broken":35,"bp_conserved":132},{"pdb":"7UVT","rmsd":5.01,"host_chain_rmsd":5.01,"apo_chain":"A","apo_len":386,"identity":100,"global_identity":98,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.86,"rg_delta":-0.99,"pocket_rmsd":13.12,"maxd":24.1,"bp_formed":38,"bp_broken":30,"bp_conserved":154},{"pdb":"7XD3","rmsd":2.68,"host_chain_rmsd":2.68,"apo_chain":"N","apo_len":423,"identity":100,"global_identity":92,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.933,"rg_delta":-2.07,"pocket_rmsd":1.32,"maxd":8.1,"bp_formed":46,"bp_broken":41,"bp_conserved":146},{"pdb":"7XD4","rmsd":4.36,"host_chain_rmsd":4.36,"apo_chain":"N","apo_len":423,"identity":100,"global_identity":93,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.923,"rg_delta":-1.88,"pocket_rmsd":1.3,"maxd":36.1,"bp_formed":44,"bp_broken":44,"bp_conserved":148},{"pdb":"7XD7","rmsd":2.66,"host_chain_rmsd":2.66,"apo_chain":"N","apo_len":405,"identity":100,"global_identity":97,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.932,"rg_delta":-2.15,"pocket_rmsd":1.28,"maxd":13.3,"bp_formed":32,"bp_broken":27,"bp_conserved":160},{"pdb":"7XSK","rmsd":4.48,"host_chain_rmsd":4.48,"apo_chain":"N","apo_len":388,"identity":100,"global_identity":99,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.888,"rg_delta":-0.26,"pocket_rmsd":11.87,"maxd":22.6,"bp_formed":33,"bp_broken":26,"bp_conserved":159},{"pdb":"7XSL","rmsd":4.53,"host_chain_rmsd":4.53,"apo_chain":"N","apo_len":388,"identity":100,"global_identity":99,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.886,"rg_delta":-0.29,"pocket_rmsd":10.87,"maxd":21.8,"bp_formed":33,"bp_broken":30,"bp_conserved":159},{"pdb":"7XSM","rmsd":4.66,"host_chain_rmsd":4.66,"apo_chain":"N","apo_len":388,"identity":100,"global_identity":99,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.88,"rg_delta":0.23,"pocket_rmsd":8.61,"maxd":22.0,"bp_formed":36,"bp_broken":32,"bp_conserved":156},{"pdb":"9CBU","rmsd":2.06,"host_chain_rmsd":2.06,"apo_chain":"N","apo_len":387,"identity":100,"global_identity":98,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.966,"rg_delta":-0.25,"pocket_rmsd":1.06,"maxd":15.0,"bp_formed":27,"bp_broken":35,"bp_conserved":165},{"pdb":"9CBW","rmsd":2.28,"host_chain_rmsd":2.28,"apo_chain":"N","apo_len":387,"identity":100,"global_identity":98,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.957,"rg_delta":0.1,"pocket_rmsd":1.02,"maxd":16.1,"bp_formed":27,"bp_broken":33,"bp_conserved":165},{"pdb":"9CBX","rmsd":2.06,"host_chain_rmsd":2.06,"apo_chain":"N","apo_len":387,"identity":100,"global_identity":98,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.966,"rg_delta":-0.25,"pocket_rmsd":1.06,"maxd":15.0,"bp_formed":27,"bp_broken":35,"bp_conserved":165},{"pdb":"9CBY","rmsd":2.28,"host_chain_rmsd":2.28,"apo_chain":"N","apo_len":387,"identity":100,"global_identity":98,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.957,"rg_delta":0.1,"pocket_rmsd":1.02,"maxd":16.1,"bp_formed":27,"bp_broken":33,"bp_conserved":165},{"pdb":"9JC8","rmsd":10.16,"host_chain_rmsd":10.16,"apo_chain":"N","apo_len":382,"identity":100,"global_identity":97,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.717,"rg_delta":-4.61,"pocket_rmsd":8.5,"maxd":30.3,"bp_formed":39,"bp_broken":22,"bp_conserved":153}],"n_apo_copies":0},{"id":"7YCG_GTP_N_C_501_pocket","title":"7YCG (GTP) vs 7XSN (apo)","struct_title":"Cryo-EM structure of Tetrahymena ribozyme conformation 2 undergoing the first-step self-splicing","holo_pdb":"7YCG","ligand":"GTP","holo_chain":"N","holo_rna_chain":"N","lig_auth_chain":"N","nearest_rna_chain":"N","lig_resseq":"501","apo_pdb":"7XSN","apo_chain":"N","holo_len":393,"apo_len":387,"pocket_size":21,"thumb":{"holo":[[0.0,0.123],[0.051,0.12],[0.088,0.145],[0.107,0.179],[0.111,0.213],[0.093,0.242],[0.069,0.231],[0.051,0.199],[0.055,0.157],[0.08,0.12],[0.117,0.101],[0.161,0.099],[0.2,0.115],[0.228,0.142],[0.239,0.162],[0.236,0.169],[0.23,0.15],[0.224,0.116],[0.229,0.076],[0.248,0.042],[0.272,0.012],[0.307,0.0],[0.346,0.009],[0.381,0.033],[0.393,0.025],[0.42,0.019],[0.399,0.02],[0.378,0.055],[0.365,0.094],[0.368,0.114],[0.368,0.111],[0.356,0.092],[0.335,0.063],[0.301,0.043],[0.261,0.025],[0.225,0.027],[0.194,0.049],[0.173,0.091],[0.165,0.133],[0.169,0.165],[0.148,0.212],[0.153,0.238],[0.172,0.275],[0.178,0.31],[0.168,0.337],[0.139,0.356],[0.093,0.365],[0.055,0.377],[0.029,0.388],[0.022,0.403],[0.038,0.423],[0.068,0.446],[0.103,0.474],[0.085,0.496],[0.142,0.486],[0.16,0.503],[0.214,0.524],[0.261,0.551],[0.268,0.576],[0.245,0.576],[0.218,0.554],[0.194,0.52],[0.166,0.486],[0.161,0.467],[0.155,0.466],[0.143,0.447],[0.122,0.416],[0.09,0.386],[0.061,0.358],[0.043,0.338],[0.038,0.32],[0.05,0.299],[0.075,0.306],[0.117,0.307],[0.155,0.3],[0.193,0.288],[0.209,0.26],[0.198,0.228],[0.208,0.201],[0.217,0.233],[0.201,0.274],[0.207,0.315],[0.226,0.349],[0.255,0.368],[0.296,0.37],[0.339,0.365],[0.378,0.38],[0.409,0.374],[0.439,0.347],[0.457,0.339],[0.507,0.317],[0.535,0.283],[0.528,0.248],[0.524,0.205],[0.51,0.165],[0.496,0.147],[0.485,0.151],[0.463,0.135],[0.473,0.144],[0.501,0.164],[0.539,0.18],[0.58,0.182],[0.619,0.171],[0.64,0.136],[0.651,0.094],[0.671,0.039],[0.674,0.054],[0.672,0.099],[0.687,0.146],[0.633,0.123],[0.606,0.089],[0.601,0.057],[0.614,0.036],[0.589,0.005],[0.654,0.018],[0.686,0.039],[0.705,0.074],[0.695,0.111],[0.679,0.158],[0.648,0.184],[0.614,0.184],[0.581,0.17],[0.548,0.2],[0.504,0.206],[0.473,0.197],[0.459,0.187],[0.464,0.188],[0.484,0.201],[0.51,0.228],[0.531,0.267],[0.531,0.303],[0.525,0.341],[0.496,0.368],[0.455,0.378],[0.413,0.397],[0.399,0.362],[0.394,0.34],[0.427,0.328],[0.468,0.325],[0.511,0.318],[0.546,0.3],[0.564,0.268],[0.563,0.228],[0.545,0.19],[0.518,0.16],[0.497,0.146],[0.501,0.147],[0.521,0.137],[0.526,0.091],[0.5,0.061],[0.473,0.096],[0.481,0.124],[0.415,0.129],[0.413,0.128],[0.436,0.106],[0.394,0.099],[0.407,0.052],[0.445,0.027],[0.488,0.023],[0.521,0.052],[0.532,0.085],[0.593,0.102],[0.617,0.041],[0.571,0.086],[0.568,0.114],[0.574,0.15],[0.534,0.173],[0.526,0.214],[0.546,0.241],[0.571,0.18],[0.622,0.175],[0.574,0.136],[0.634,0.154],[0.677,0.143],[0.705,0.113],[0.714,0.073],[0.699,0.034],[0.671,0.012],[0.64,0.011],[0.615,0.023],[0.614,0.041],[0.607,0.04],[0.562,0.042],[0.583,0.047],[0.599,0.069],[0.601,0.109],[0.598,0.151],[0.579,0.189],[0.541,0.208],[0.504,0.201],[0.455,0.197],[0.441,0.187],[0.438,0.169],[0.396,0.154],[0.445,0.183],[0.465,0.192],[0.489,0.216],[0.499,0.252],[0.49,0.292],[0.46,0.323],[0.422,0.339],[0.38,0.368],[0.34,0.362],[0.324,0.339],[0.324,0.315],[0.338,0.31],[0.36,0.324],[0.367,0.359],[0.357,0.399],[0.4,0.429],[0.383,0.462],[0.345,0.478],[0.303,0.481],[0.263,0.476],[0.24,0.465],[0.236,0.457],[0.253,0.471],[0.277,0.489],[0.305,0.517],[0.303,0.564],[0.271,0.551],[0.296,0.592],[0.338,0.565],[0.345,0.524],[0.336,0.483],[0.311,0.446],[0.282,0.42],[0.265,0.41],[0.265,0.411],[0.283,0.421],[0.317,0.429],[0.367,0.414],[0.397,0.447],[0.408,0.393],[0.411,0.352],[0.401,0.312],[0.383,0.298],[0.374,0.303],[0.368,0.28],[0.361,0.248],[0.396,0.302],[0.443,0.306],[0.47,0.277],[0.451,0.26],[0.457,0.3],[0.478,0.299],[0.52,0.32],[0.496,0.348],[0.475,0.39],[0.438,0.409],[0.393,0.414],[0.356,0.394],[0.337,0.363],[0.328,0.317],[0.323,0.273],[0.346,0.292],[0.339,0.308],[0.308,0.321],[0.268,0.328],[0.224,0.335],[0.182,0.321],[0.172,0.284],[0.173,0.244],[0.19,0.199],[0.206,0.165],[0.216,0.152],[0.218,0.156],[0.205,0.173],[0.179,0.196],[0.142,0.218],[0.103,0.22],[0.077,0.196],[0.042,0.196],[0.06,0.163],[0.08,0.189],[0.097,0.228],[0.13,0.248],[0.171,0.25],[0.211,0.235],[0.243,0.211],[0.26,0.191],[0.265,0.184],[0.265,0.201],[0.255,0.247],[0.286,0.2],[0.332,0.211],[0.357,0.243],[0.383,0.281],[0.441,0.252],[0.417,0.311],[0.364,0.312],[0.354,0.352],[0.38,0.382],[0.417,0.412],[0.457,0.404],[0.489,0.381],[0.508,0.343],[0.512,0.31],[0.564,0.316],[0.601,0.318],[0.629,0.34],[0.655,0.362],[0.671,0.356],[0.67,0.329],[0.654,0.291],[0.645,0.251],[0.642,0.212],[0.673,0.174],[0.649,0.193],[0.614,0.203],[0.6,0.228],[0.591,0.251],[0.596,0.286],[0.607,0.327],[0.622,0.366],[0.603,0.416],[0.578,0.447],[0.561,0.489],[0.548,0.528],[0.537,0.552],[0.52,0.56],[0.5,0.548],[0.475,0.524],[0.446,0.495],[0.418,0.476],[0.397,0.44],[0.37,0.445],[0.344,0.467],[0.317,0.502],[0.285,0.528],[0.223,0.49],[0.215,0.458],[0.225,0.453],[0.241,0.473],[0.261,0.508],[0.284,0.53],[0.301,0.56],[0.324,0.568],[0.349,0.551],[0.373,0.521],[0.398,0.502],[0.425,0.455],[0.453,0.43],[0.479,0.436],[0.504,0.463],[0.531,0.495],[0.558,0.524],[0.578,0.543],[0.593,0.548],[0.607,0.522],[0.617,0.498],[0.686,0.487],[0.632,0.458],[0.655,0.416],[0.689,0.401],[0.723,0.403],[0.758,0.423],[0.785,0.456],[0.801,0.49],[0.807,0.509],[0.816,0.502],[0.814,0.489],[0.82,0.454],[0.836,0.412],[0.863,0.383],[0.904,0.371],[0.939,0.387],[0.945,0.423],[0.968,0.461],[0.947,0.48],[0.934,0.489],[0.925,0.467],[0.912,0.428],[0.879,0.391],[0.844,0.378],[0.807,0.386],[0.778,0.415],[0.764,0.453],[0.758,0.495],[0.755,0.518],[0.755,0.523],[0.747,0.506],[0.732,0.475],[0.707,0.441],[0.673,0.414],[0.637,0.411],[0.624,0.384],[0.626,0.397],[0.606,0.394],[0.576,0.387],[0.535,0.369],[0.505,0.384],[0.491,0.326]],"apo":[[0.102,0.232],[0.07,0.254],[0.108,0.248],[0.142,0.226],[0.157,0.185],[0.171,0.151],[0.184,0.123],[0.204,0.104],[0.237,0.134],[0.239,0.162],[0.235,0.168],[0.231,0.146],[0.224,0.115],[0.228,0.075],[0.248,0.04],[0.272,0.012],[0.307,0.001],[0.345,0.01],[0.38,0.034],[0.395,0.028],[0.419,0.019],[0.397,0.019],[0.377,0.056],[0.366,0.094],[0.364,0.114],[0.366,0.111],[0.357,0.092],[0.335,0.063],[0.301,0.043],[0.262,0.026],[0.227,0.028],[0.195,0.05],[0.175,0.087],[0.166,0.13],[0.167,0.164],[0.146,0.205],[0.155,0.234],[0.17,0.273],[0.175,0.306],[0.166,0.331],[0.137,0.347],[0.097,0.356],[0.056,0.365],[0.03,0.377],[0.023,0.393],[0.038,0.413],[0.061,0.443],[0.095,0.468],[0.109,0.502],[0.136,0.486],[0.169,0.509],[0.21,0.513],[0.256,0.556],[0.266,0.57],[0.248,0.566],[0.22,0.547],[0.195,0.508],[0.173,0.482],[0.163,0.46],[0.158,0.46],[0.139,0.444],[0.12,0.416],[0.086,0.386],[0.06,0.356],[0.04,0.333],[0.052,0.315],[0.027,0.304],[0.068,0.303],[0.111,0.3],[0.151,0.292],[0.188,0.282],[0.209,0.258],[0.197,0.225],[0.208,0.198],[0.215,0.23],[0.201,0.272],[0.207,0.313],[0.224,0.347],[0.254,0.364],[0.295,0.367],[0.338,0.364],[0.374,0.377],[0.407,0.373],[0.438,0.346],[0.457,0.339],[0.507,0.319],[0.534,0.284],[0.529,0.25],[0.523,0.203],[0.51,0.167],[0.493,0.149],[0.483,0.151],[0.459,0.141],[0.469,0.149],[0.496,0.168],[0.535,0.181],[0.574,0.183],[0.613,0.172],[0.633,0.137],[0.644,0.094],[0.656,0.042],[0.668,0.052],[0.667,0.096],[0.678,0.144],[0.627,0.124],[0.601,0.09],[0.596,0.056],[0.609,0.038],[0.586,0.004],[0.649,0.019],[0.683,0.038],[0.704,0.071],[0.699,0.111],[0.681,0.155],[0.651,0.181],[0.618,0.18],[0.582,0.168],[0.548,0.203],[0.505,0.208],[0.474,0.197],[0.463,0.186],[0.467,0.188],[0.487,0.201],[0.512,0.228],[0.532,0.264],[0.534,0.303],[0.527,0.34],[0.498,0.366],[0.457,0.377],[0.413,0.399],[0.399,0.364],[0.396,0.34],[0.429,0.326],[0.469,0.326],[0.51,0.318],[0.546,0.3],[0.565,0.267],[0.565,0.228],[0.549,0.188],[0.524,0.159],[0.501,0.145],[0.505,0.146],[0.526,0.136],[0.525,0.093],[0.5,0.059],[0.472,0.094],[0.482,0.131],[0.416,0.131],[0.412,0.129],[0.436,0.106],[0.398,0.099],[0.409,0.053],[0.444,0.028],[0.488,0.025],[0.521,0.053],[0.535,0.085],[0.595,0.1],[0.618,0.04],[0.572,0.085],[0.569,0.114],[0.574,0.15],[0.536,0.171],[0.525,0.213],[0.548,0.237],[0.572,0.179],[0.62,0.171],[0.575,0.139],[0.636,0.153],[0.676,0.141],[0.703,0.11],[0.709,0.069],[0.693,0.033],[0.664,0.011],[0.633,0.012],[0.608,0.026],[0.603,0.031],[0.595,0.041],[0.544,0.03],[0.574,0.048],[0.591,0.072],[0.595,0.111],[0.591,0.154],[0.574,0.192],[0.539,0.211],[0.498,0.204],[0.448,0.202],[0.438,0.19],[0.438,0.171],[0.396,0.155],[0.445,0.183],[0.469,0.193],[0.49,0.218],[0.499,0.254],[0.489,0.294],[0.46,0.323],[0.419,0.338],[0.378,0.365],[0.338,0.361],[0.325,0.335],[0.325,0.314],[0.338,0.31],[0.361,0.324],[0.369,0.358],[0.358,0.399],[0.399,0.427],[0.382,0.46],[0.346,0.477],[0.304,0.481],[0.266,0.475],[0.242,0.466],[0.238,0.457],[0.256,0.468],[0.278,0.484],[0.288,0.522],[0.305,0.563],[0.277,0.6],[0.314,0.587],[0.346,0.563],[0.341,0.525],[0.338,0.479],[0.315,0.444],[0.284,0.422],[0.267,0.41],[0.267,0.41],[0.284,0.42],[0.319,0.428],[0.362,0.416],[0.393,0.444],[0.408,0.393],[0.41,0.35],[0.401,0.312],[0.385,0.299],[0.374,0.303],[0.369,0.278],[0.361,0.247],[0.398,0.299],[0.441,0.305],[0.471,0.275],[0.451,0.259],[0.455,0.303],[0.478,0.298],[0.519,0.32],[0.494,0.347],[0.474,0.39],[0.437,0.409],[0.394,0.412],[0.357,0.392],[0.336,0.361],[0.327,0.316],[0.324,0.275],[0.345,0.291],[0.339,0.309],[0.307,0.319],[0.266,0.327],[0.224,0.331],[0.183,0.32],[0.169,0.282],[0.174,0.24],[0.191,0.195],[0.206,0.161],[0.215,0.151],[0.218,0.154],[0.205,0.17],[0.18,0.192],[0.145,0.215],[0.106,0.22],[0.075,0.199],[0.025,0.183],[0.049,0.176],[0.079,0.195],[0.1,0.228],[0.134,0.247],[0.174,0.248],[0.213,0.233],[0.243,0.209],[0.258,0.19],[0.264,0.182],[0.265,0.201],[0.255,0.246],[0.289,0.201],[0.332,0.208],[0.351,0.241],[0.384,0.283],[0.439,0.25],[0.418,0.311],[0.365,0.311],[0.355,0.349],[0.379,0.379],[0.414,0.409],[0.455,0.404],[0.488,0.382],[0.51,0.347],[0.519,0.315],[0.563,0.316],[0.604,0.326],[0.63,0.344],[0.656,0.366],[0.672,0.353],[0.67,0.328],[0.656,0.292],[0.643,0.253],[0.638,0.214],[0.667,0.169],[0.645,0.19],[0.611,0.204],[0.597,0.229],[0.59,0.251],[0.597,0.285],[0.609,0.324],[0.62,0.365],[0.6,0.416],[0.574,0.448],[0.56,0.489],[0.542,0.525],[0.531,0.55],[0.519,0.558],[0.5,0.546],[0.475,0.523],[0.449,0.492],[0.408,0.474],[0.396,0.437],[0.37,0.442],[0.337,0.466],[0.312,0.503],[0.283,0.525],[0.218,0.488],[0.217,0.457],[0.223,0.447],[0.241,0.464],[0.266,0.493],[0.287,0.526],[0.304,0.553],[0.323,0.564],[0.348,0.55],[0.373,0.524],[0.398,0.499],[0.426,0.452],[0.456,0.429],[0.48,0.435],[0.502,0.461],[0.529,0.495],[0.555,0.523],[0.575,0.543],[0.591,0.547],[0.602,0.522],[0.612,0.497],[0.667,0.479],[0.627,0.457],[0.651,0.418],[0.686,0.402],[0.723,0.405],[0.757,0.426],[0.786,0.46],[0.799,0.491],[0.806,0.509],[0.816,0.506],[0.812,0.487],[0.815,0.451],[0.846,0.413],[0.872,0.389],[0.903,0.379],[0.929,0.388],[0.952,0.421],[1.0,0.449],[0.972,0.48],[0.944,0.488],[0.918,0.468],[0.897,0.431],[0.865,0.398],[0.841,0.38],[0.796,0.381],[0.777,0.418],[0.766,0.461],[0.749,0.493],[0.743,0.516],[0.751,0.525],[0.744,0.506],[0.73,0.476],[0.706,0.444],[0.674,0.417],[0.636,0.411],[0.627,0.386],[0.626,0.397],[0.607,0.401],[0.577,0.388],[0.538,0.375],[0.496,0.387]]},"method":"EM","resolution":3.18,"rna_type":"Group I intron ribozyme","rna_group":"Catalytic (ribozyme)","num_chains":1,"total_rna_len":404,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":99,"pocket_motifs":["junction","internal loop","bulge","stem","single strand"],"rmsd":1.82,"host_chain_rmsd":1.82,"pocket_rmsd":0.61,"lig_bsa":320.9,"ligand_burial":0.542,"tm_score":0.965,"rg_apo":36.46,"rg_holo":36.67,"rg_delta":0.21,"bp_rewire_src":"dssr","bp_formed":13,"bp_broken":20,"bp_conserved":176,"bp_formed_wc":2,"bp_broken_wc":0,"bp_conserved_wc":125,"maxd":14.5,"water":0,"hbonds":5,"mw":523.2,"logp":-2.34,"thumb_img":true,"thumb_v":1785389625,"apo_alts":[{"pdb":"6WLS","rmsd":4.23,"host_chain_rmsd":4.23,"apo_chain":"A","apo_len":388,"identity":100,"global_identity":99,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.885,"rg_delta":-2.3,"pocket_rmsd":5.5,"maxd":20.5,"bp_formed":40,"bp_broken":29,"bp_conserved":149},{"pdb":"7R6M","rmsd":5.56,"host_chain_rmsd":5.56,"apo_chain":"A","apo_len":356,"identity":96,"global_identity":95,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.856,"rg_delta":0.17,"pocket_rmsd":1.97,"maxd":42.3,"bp_formed":63,"bp_broken":41,"bp_conserved":126},{"pdb":"7R6N","rmsd":2.33,"host_chain_rmsd":2.33,"apo_chain":"A","apo_len":354,"identity":99,"global_identity":94,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.874,"rg_delta":-0.18,"pocket_rmsd":1.21,"maxd":15.0,"bp_formed":54,"bp_broken":32,"bp_conserved":135},{"pdb":"7XD3","rmsd":2.54,"host_chain_rmsd":2.54,"apo_chain":"N","apo_len":423,"identity":100,"global_identity":92,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.945,"rg_delta":-1.9,"pocket_rmsd":1.96,"maxd":11.9,"bp_formed":38,"bp_broken":36,"bp_conserved":151},{"pdb":"7XD4","rmsd":5.78,"host_chain_rmsd":5.78,"apo_chain":"N","apo_len":423,"identity":100,"global_identity":93,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.926,"rg_delta":-1.53,"pocket_rmsd":2.29,"maxd":51.0,"bp_formed":38,"bp_broken":41,"bp_conserved":151},{"pdb":"7XD7","rmsd":2.38,"host_chain_rmsd":2.38,"apo_chain":"N","apo_len":405,"identity":100,"global_identity":97,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.944,"rg_delta":-1.98,"pocket_rmsd":3.04,"maxd":12.9,"bp_formed":21,"bp_broken":19,"bp_conserved":168},{"pdb":"7XSK","rmsd":4.33,"host_chain_rmsd":4.33,"apo_chain":"N","apo_len":388,"identity":100,"global_identity":99,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.885,"rg_delta":-0.05,"pocket_rmsd":11.94,"maxd":22.6,"bp_formed":29,"bp_broken":25,"bp_conserved":160},{"pdb":"7XSL","rmsd":4.41,"host_chain_rmsd":4.41,"apo_chain":"N","apo_len":388,"identity":100,"global_identity":99,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.881,"rg_delta":-0.08,"pocket_rmsd":11.43,"maxd":21.8,"bp_formed":27,"bp_broken":27,"bp_conserved":162},{"pdb":"7XSM","rmsd":4.45,"host_chain_rmsd":4.45,"apo_chain":"N","apo_len":388,"identity":100,"global_identity":99,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.876,"rg_delta":0.44,"pocket_rmsd":8.43,"maxd":20.7,"bp_formed":29,"bp_broken":28,"bp_conserved":160}],"n_apo_copies":0},{"id":"7YCH_GTP_N_C_501_pocket","title":"7YCH (GTP) vs 7XSN (apo)","struct_title":"Cryo-EM structure of Tetrahymena ribozyme conformation 3 undergoing the first-step self-splicing","holo_pdb":"7YCH","ligand":"GTP","holo_chain":"N","holo_rna_chain":"N","lig_auth_chain":"N","nearest_rna_chain":"N","lig_resseq":"501","apo_pdb":"7XSN","apo_chain":"N","holo_len":393,"apo_len":387,"pocket_size":25,"thumb":{"holo":[[0.623,0.309],[0.628,0.354],[0.617,0.402],[0.598,0.437],[0.586,0.451],[0.58,0.449],[0.603,0.44],[0.641,0.43],[0.685,0.422],[0.724,0.426],[0.759,0.442],[0.802,0.492],[0.815,0.475],[0.759,0.486],[0.778,0.449],[0.784,0.44],[0.792,0.459],[0.797,0.495],[0.793,0.536],[0.774,0.571],[0.747,0.602],[0.71,0.611],[0.671,0.599],[0.631,0.573],[0.623,0.582],[0.595,0.59],[0.618,0.593],[0.638,0.555],[0.653,0.513],[0.649,0.496],[0.649,0.495],[0.661,0.513],[0.681,0.543],[0.715,0.565],[0.757,0.586],[0.797,0.583],[0.827,0.563],[0.851,0.521],[0.858,0.477],[0.851,0.444],[0.87,0.397],[0.864,0.368],[0.847,0.331],[0.838,0.297],[0.847,0.27],[0.876,0.252],[0.923,0.241],[0.962,0.229],[0.991,0.218],[1.0,0.203],[0.985,0.182],[0.955,0.156],[0.92,0.128],[0.932,0.103],[0.888,0.108],[0.854,0.101],[0.817,0.075],[0.764,0.043],[0.747,0.024],[0.768,0.023],[0.795,0.044],[0.82,0.078],[0.849,0.113],[0.859,0.131],[0.863,0.133],[0.876,0.155],[0.898,0.184],[0.932,0.217],[0.961,0.245],[0.979,0.266],[0.983,0.285],[0.97,0.3],[0.94,0.305],[0.897,0.307],[0.855,0.315],[0.818,0.326],[0.804,0.35],[0.818,0.383],[0.809,0.407],[0.8,0.375],[0.816,0.332],[0.81,0.291],[0.792,0.255],[0.763,0.235],[0.723,0.229],[0.679,0.235],[0.637,0.221],[0.605,0.23],[0.574,0.254],[0.554,0.261],[0.503,0.286],[0.474,0.32],[0.48,0.357],[0.487,0.401],[0.502,0.44],[0.52,0.453],[0.535,0.449],[0.557,0.465],[0.547,0.455],[0.519,0.434],[0.48,0.415],[0.437,0.417],[0.398,0.431],[0.377,0.468],[0.367,0.514],[0.355,0.568],[0.346,0.558],[0.341,0.508],[0.328,0.461],[0.383,0.485],[0.413,0.517],[0.42,0.549],[0.408,0.57],[0.43,0.604],[0.365,0.592],[0.33,0.573],[0.308,0.539],[0.314,0.501],[0.333,0.452],[0.361,0.426],[0.396,0.426],[0.43,0.44],[0.463,0.406],[0.508,0.401],[0.541,0.411],[0.556,0.422],[0.553,0.422],[0.535,0.408],[0.51,0.381],[0.488,0.341],[0.494,0.305],[0.496,0.266],[0.526,0.236],[0.568,0.225],[0.612,0.212],[0.626,0.245],[0.629,0.266],[0.594,0.278],[0.551,0.28],[0.507,0.288],[0.473,0.305],[0.453,0.338],[0.454,0.38],[0.471,0.419],[0.498,0.451],[0.52,0.468],[0.512,0.466],[0.489,0.473],[0.488,0.52],[0.517,0.549],[0.543,0.512],[0.535,0.485],[0.602,0.474],[0.605,0.478],[0.583,0.501],[0.624,0.511],[0.609,0.558],[0.573,0.582],[0.527,0.589],[0.492,0.562],[0.482,0.527],[0.42,0.51],[0.39,0.57],[0.443,0.526],[0.445,0.496],[0.438,0.458],[0.48,0.432],[0.486,0.39],[0.465,0.364],[0.441,0.428],[0.388,0.435],[0.437,0.472],[0.375,0.454],[0.334,0.467],[0.307,0.499],[0.301,0.54],[0.321,0.576],[0.35,0.599],[0.383,0.598],[0.41,0.585],[0.41,0.565],[0.418,0.567],[0.462,0.559],[0.441,0.556],[0.423,0.537],[0.42,0.496],[0.42,0.449],[0.439,0.407],[0.475,0.387],[0.514,0.394],[0.568,0.398],[0.577,0.408],[0.578,0.431],[0.621,0.447],[0.569,0.417],[0.548,0.412],[0.523,0.386],[0.512,0.351],[0.524,0.31],[0.555,0.278],[0.595,0.26],[0.639,0.234],[0.68,0.239],[0.697,0.264],[0.697,0.289],[0.684,0.294],[0.666,0.279],[0.658,0.246],[0.67,0.202],[0.625,0.173],[0.643,0.138],[0.682,0.122],[0.726,0.12],[0.767,0.128],[0.792,0.14],[0.797,0.148],[0.78,0.128],[0.752,0.112],[0.721,0.086],[0.723,0.037],[0.754,0.046],[0.709,0.0],[0.687,0.037],[0.682,0.079],[0.694,0.121],[0.72,0.16],[0.748,0.186],[0.764,0.197],[0.763,0.196],[0.743,0.183],[0.707,0.173],[0.654,0.19],[0.626,0.153],[0.615,0.209],[0.61,0.251],[0.619,0.292],[0.636,0.306],[0.645,0.301],[0.65,0.324],[0.654,0.354],[0.621,0.297],[0.568,0.295],[0.534,0.329],[0.564,0.342],[0.552,0.297],[0.527,0.299],[0.485,0.279],[0.512,0.251],[0.533,0.207],[0.573,0.187],[0.62,0.184],[0.659,0.206],[0.68,0.238],[0.689,0.284],[0.691,0.331],[0.669,0.31],[0.679,0.295],[0.712,0.282],[0.752,0.276],[0.798,0.269],[0.842,0.285],[0.852,0.323],[0.847,0.364],[0.829,0.412],[0.816,0.445],[0.806,0.459],[0.804,0.455],[0.817,0.436],[0.845,0.413],[0.884,0.385],[0.932,0.373],[0.955,0.401],[0.995,0.44],[0.965,0.438],[0.953,0.407],[0.928,0.375],[0.894,0.357],[0.851,0.356],[0.81,0.373],[0.778,0.398],[0.76,0.419],[0.754,0.427],[0.753,0.406],[0.762,0.359],[0.728,0.409],[0.68,0.396],[0.656,0.358],[0.628,0.319],[0.571,0.35],[0.591,0.287],[0.645,0.287],[0.656,0.248],[0.627,0.217],[0.59,0.185],[0.549,0.192],[0.514,0.215],[0.497,0.251],[0.495,0.286],[0.442,0.283],[0.399,0.278],[0.374,0.257],[0.347,0.237],[0.332,0.246],[0.337,0.273],[0.355,0.314],[0.366,0.355],[0.372,0.391],[0.337,0.43],[0.369,0.412],[0.403,0.397],[0.414,0.371],[0.421,0.351],[0.413,0.314],[0.401,0.274],[0.383,0.232],[0.403,0.182],[0.429,0.149],[0.445,0.107],[0.459,0.066],[0.471,0.041],[0.487,0.032],[0.505,0.044],[0.529,0.068],[0.559,0.1],[0.591,0.119],[0.612,0.157],[0.642,0.153],[0.671,0.131],[0.698,0.096],[0.732,0.068],[0.799,0.105],[0.803,0.138],[0.791,0.149],[0.772,0.127],[0.746,0.092],[0.725,0.06],[0.71,0.038],[0.688,0.026],[0.663,0.045],[0.64,0.076],[0.614,0.094],[0.587,0.141],[0.557,0.166],[0.53,0.16],[0.504,0.131],[0.475,0.098],[0.447,0.069],[0.427,0.05],[0.411,0.046],[0.397,0.073],[0.392,0.097],[0.325,0.1],[0.372,0.141],[0.35,0.184],[0.315,0.199],[0.278,0.195],[0.239,0.175],[0.21,0.141],[0.193,0.108],[0.19,0.087],[0.185,0.095],[0.196,0.092],[0.189,0.129],[0.17,0.172],[0.137,0.197],[0.098,0.21],[0.062,0.193],[0.054,0.156],[0.027,0.121],[0.046,0.098],[0.057,0.086],[0.068,0.109],[0.083,0.151],[0.113,0.185],[0.148,0.208],[0.187,0.203],[0.215,0.175],[0.234,0.137],[0.252,0.099],[0.252,0.075],[0.248,0.071],[0.253,0.09],[0.268,0.122],[0.294,0.157],[0.331,0.185],[0.369,0.187],[0.382,0.203],[0.374,0.196],[0.389,0.192],[0.424,0.207],[0.473,0.225],[0.509,0.206],[0.513,0.264]],"apo":[[0.914,0.374],[0.946,0.351],[0.906,0.357],[0.87,0.379],[0.855,0.422],[0.841,0.456],[0.829,0.485],[0.806,0.503],[0.773,0.473],[0.773,0.445],[0.778,0.439],[0.783,0.462],[0.791,0.494],[0.787,0.536],[0.766,0.571],[0.74,0.6],[0.703,0.611],[0.663,0.6],[0.628,0.575],[0.615,0.582],[0.59,0.591],[0.615,0.592],[0.636,0.555],[0.647,0.516],[0.647,0.495],[0.644,0.497],[0.652,0.516],[0.673,0.545],[0.708,0.566],[0.748,0.584],[0.786,0.583],[0.818,0.561],[0.84,0.524],[0.849,0.48],[0.848,0.444],[0.869,0.402],[0.861,0.371],[0.845,0.332],[0.839,0.298],[0.848,0.271],[0.876,0.255],[0.918,0.246],[0.96,0.237],[0.988,0.226],[0.997,0.21],[0.983,0.19],[0.961,0.159],[0.926,0.132],[0.911,0.098],[0.883,0.114],[0.849,0.089],[0.806,0.085],[0.76,0.04],[0.747,0.024],[0.764,0.028],[0.791,0.048],[0.817,0.088],[0.839,0.115],[0.851,0.138],[0.858,0.139],[0.879,0.156],[0.899,0.185],[0.935,0.217],[0.96,0.248],[0.98,0.271],[0.965,0.289],[0.99,0.3],[0.946,0.3],[0.902,0.303],[0.861,0.311],[0.824,0.321],[0.803,0.345],[0.816,0.38],[0.805,0.408],[0.799,0.376],[0.813,0.332],[0.808,0.291],[0.791,0.255],[0.762,0.238],[0.72,0.235],[0.676,0.237],[0.638,0.224],[0.606,0.228],[0.574,0.255],[0.552,0.261],[0.502,0.282],[0.475,0.318],[0.479,0.353],[0.484,0.401],[0.497,0.437],[0.512,0.456],[0.521,0.453],[0.544,0.463],[0.533,0.454],[0.504,0.434],[0.463,0.42],[0.424,0.418],[0.386,0.43],[0.365,0.465],[0.353,0.509],[0.339,0.563],[0.329,0.553],[0.331,0.507],[0.32,0.458],[0.373,0.479],[0.4,0.515],[0.406,0.55],[0.394,0.57],[0.419,0.605],[0.354,0.589],[0.32,0.569],[0.299,0.535],[0.306,0.494],[0.324,0.449],[0.356,0.424],[0.391,0.425],[0.428,0.438],[0.463,0.403],[0.507,0.398],[0.539,0.409],[0.553,0.421],[0.55,0.42],[0.531,0.407],[0.506,0.379],[0.486,0.342],[0.484,0.302],[0.49,0.263],[0.52,0.236],[0.562,0.226],[0.608,0.204],[0.622,0.24],[0.624,0.264],[0.589,0.278],[0.548,0.277],[0.506,0.286],[0.469,0.304],[0.45,0.337],[0.45,0.378],[0.467,0.419],[0.491,0.45],[0.514,0.464],[0.508,0.462],[0.485,0.471],[0.485,0.515],[0.509,0.55],[0.538,0.515],[0.526,0.475],[0.594,0.476],[0.599,0.479],[0.576,0.502],[0.616,0.511],[0.604,0.558],[0.569,0.583],[0.523,0.586],[0.489,0.557],[0.476,0.524],[0.416,0.508],[0.391,0.569],[0.437,0.524],[0.441,0.493],[0.434,0.456],[0.471,0.434],[0.483,0.391],[0.462,0.366],[0.437,0.426],[0.386,0.434],[0.431,0.467],[0.369,0.452],[0.327,0.464],[0.299,0.495],[0.291,0.536],[0.307,0.573],[0.337,0.596],[0.367,0.595],[0.392,0.58],[0.395,0.574],[0.401,0.563],[0.453,0.575],[0.424,0.557],[0.408,0.533],[0.405,0.493],[0.41,0.449],[0.427,0.41],[0.463,0.391],[0.505,0.398],[0.556,0.401],[0.568,0.414],[0.569,0.434],[0.613,0.451],[0.563,0.421],[0.54,0.412],[0.519,0.386],[0.511,0.349],[0.522,0.308],[0.552,0.279],[0.594,0.263],[0.636,0.236],[0.677,0.241],[0.691,0.268],[0.693,0.29],[0.681,0.295],[0.659,0.281],[0.652,0.246],[0.664,0.204],[0.623,0.176],[0.64,0.142],[0.677,0.124],[0.72,0.121],[0.76,0.127],[0.785,0.138],[0.791,0.147],[0.774,0.136],[0.753,0.12],[0.743,0.081],[0.726,0.039],[0.754,0.001],[0.715,0.013],[0.681,0.037],[0.687,0.077],[0.689,0.124],[0.713,0.16],[0.743,0.183],[0.76,0.194],[0.758,0.194],[0.74,0.183],[0.703,0.174],[0.658,0.186],[0.625,0.157],[0.611,0.209],[0.608,0.253],[0.617,0.292],[0.631,0.305],[0.64,0.301],[0.644,0.325],[0.65,0.357],[0.614,0.303],[0.57,0.296],[0.537,0.327],[0.557,0.344],[0.551,0.297],[0.526,0.302],[0.485,0.279],[0.511,0.252],[0.533,0.208],[0.571,0.189],[0.616,0.186],[0.653,0.208],[0.676,0.24],[0.684,0.286],[0.686,0.328],[0.667,0.312],[0.675,0.294],[0.709,0.285],[0.75,0.277],[0.793,0.272],[0.835,0.284],[0.848,0.323],[0.843,0.366],[0.825,0.412],[0.81,0.447],[0.802,0.458],[0.801,0.455],[0.816,0.44],[0.842,0.418],[0.879,0.394],[0.919,0.39],[0.949,0.411],[1.0,0.428],[0.974,0.435],[0.943,0.415],[0.922,0.38],[0.888,0.361],[0.848,0.36],[0.808,0.375],[0.776,0.399],[0.759,0.418],[0.751,0.426],[0.749,0.406],[0.758,0.359],[0.721,0.404],[0.677,0.396],[0.657,0.362],[0.625,0.319],[0.568,0.352],[0.59,0.29],[0.644,0.29],[0.654,0.251],[0.628,0.22],[0.592,0.188],[0.551,0.193],[0.516,0.215],[0.493,0.251],[0.482,0.283],[0.436,0.281],[0.394,0.271],[0.368,0.252],[0.343,0.23],[0.329,0.243],[0.332,0.27],[0.347,0.307],[0.359,0.347],[0.362,0.387],[0.331,0.432],[0.353,0.411],[0.387,0.397],[0.403,0.372],[0.412,0.35],[0.406,0.314],[0.395,0.274],[0.383,0.232],[0.406,0.18],[0.433,0.148],[0.448,0.106],[0.466,0.069],[0.476,0.044],[0.488,0.035],[0.506,0.046],[0.53,0.07],[0.557,0.103],[0.599,0.121],[0.611,0.16],[0.639,0.155],[0.674,0.131],[0.7,0.094],[0.731,0.071],[0.797,0.11],[0.797,0.141],[0.789,0.151],[0.769,0.132],[0.744,0.103],[0.722,0.068],[0.707,0.041],[0.688,0.03],[0.664,0.044],[0.639,0.071],[0.612,0.096],[0.583,0.144],[0.551,0.168],[0.526,0.161],[0.502,0.134],[0.474,0.099],[0.449,0.069],[0.43,0.049],[0.415,0.045],[0.404,0.071],[0.395,0.097],[0.338,0.115],[0.379,0.139],[0.354,0.178],[0.317,0.194],[0.279,0.191],[0.244,0.169],[0.214,0.133],[0.202,0.102],[0.197,0.084],[0.188,0.088],[0.193,0.107],[0.191,0.145],[0.159,0.183],[0.131,0.207],[0.099,0.217],[0.07,0.208],[0.049,0.173],[0.0,0.144],[0.029,0.113],[0.056,0.104],[0.082,0.125],[0.102,0.163],[0.135,0.197],[0.161,0.217],[0.208,0.217],[0.229,0.179],[0.24,0.134],[0.257,0.101],[0.262,0.078],[0.252,0.068],[0.258,0.086],[0.27,0.117],[0.295,0.149],[0.327,0.178],[0.367,0.185],[0.374,0.21],[0.374,0.198],[0.391,0.193],[0.421,0.206],[0.461,0.221],[0.505,0.209]]},"method":"EM","resolution":3.09,"rna_type":"Group I intron ribozyme","rna_group":"Catalytic (ribozyme)","num_chains":2,"total_rna_len":404,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":99,"pocket_motifs":["junction","internal loop","bulge","stem","single strand"],"rmsd":4.16,"host_chain_rmsd":4.16,"pocket_rmsd":0.81,"lig_bsa":381.0,"ligand_burial":0.626,"tm_score":0.956,"rg_apo":36.46,"rg_holo":36.35,"rg_delta":-0.11,"bp_rewire_src":"dssr","bp_formed":21,"bp_broken":29,"bp_conserved":167,"bp_formed_wc":2,"bp_broken_wc":2,"bp_conserved_wc":124,"maxd":43.6,"water":0,"hbonds":4,"mw":523.2,"logp":-2.34,"thumb_img":true,"thumb_v":1785389626,"apo_alts":[{"pdb":"6WLS","rmsd":6.1,"host_chain_rmsd":6.1,"apo_chain":"A","apo_len":388,"identity":100,"global_identity":99,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.877,"rg_delta":-2.62,"pocket_rmsd":5.15,"maxd":53.4,"bp_formed":40,"bp_broken":30,"bp_conserved":148},{"pdb":"7R6M","rmsd":2.04,"host_chain_rmsd":2.04,"apo_chain":"A","apo_len":356,"identity":96,"global_identity":95,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.878,"rg_delta":-0.42,"pocket_rmsd":1.47,"maxd":8.3,"bp_formed":66,"bp_broken":45,"bp_conserved":122},{"pdb":"7R6N","rmsd":2.87,"host_chain_rmsd":2.87,"apo_chain":"A","apo_len":354,"identity":99,"global_identity":94,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.866,"rg_delta":-0.39,"pocket_rmsd":1.15,"maxd":25.8,"bp_formed":58,"bp_broken":37,"bp_conserved":130},{"pdb":"7XD3","rmsd":7.19,"host_chain_rmsd":7.19,"apo_chain":"N","apo_len":423,"identity":100,"global_identity":92,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.917,"rg_delta":-2.5,"pocket_rmsd":2.4,"maxd":50.5,"bp_formed":39,"bp_broken":38,"bp_conserved":149},{"pdb":"7XD4","rmsd":4.5,"host_chain_rmsd":4.5,"apo_chain":"N","apo_len":423,"identity":100,"global_identity":93,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.92,"rg_delta":-2.13,"pocket_rmsd":2.02,"maxd":37.3,"bp_formed":38,"bp_broken":42,"bp_conserved":150},{"pdb":"7XD7","rmsd":6.56,"host_chain_rmsd":6.56,"apo_chain":"N","apo_len":405,"identity":100,"global_identity":97,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.922,"rg_delta":-2.46,"pocket_rmsd":3.23,"maxd":48.6,"bp_formed":31,"bp_broken":30,"bp_conserved":157},{"pdb":"7XSK","rmsd":6.06,"host_chain_rmsd":6.06,"apo_chain":"N","apo_len":388,"identity":100,"global_identity":99,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.87,"rg_delta":-0.37,"pocket_rmsd":11.67,"maxd":49.0,"bp_formed":28,"bp_broken":25,"bp_conserved":160},{"pdb":"7XSL","rmsd":5.82,"host_chain_rmsd":5.82,"apo_chain":"N","apo_len":388,"identity":100,"global_identity":99,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.875,"rg_delta":-0.4,"pocket_rmsd":11.06,"maxd":37.3,"bp_formed":31,"bp_broken":32,"bp_conserved":157},{"pdb":"7XSM","rmsd":5.6,"host_chain_rmsd":5.6,"apo_chain":"N","apo_len":388,"identity":100,"global_identity":99,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.863,"rg_delta":0.12,"pocket_rmsd":7.84,"maxd":35.8,"bp_formed":30,"bp_broken":30,"bp_conserved":158}],"n_apo_copies":0},{"id":"7YCI_GTP_N_C_501_pocket","title":"7YCI (GTP) vs 7XD5 (apo)","struct_title":"Cryo-EM structure of Tetrahymena ribozyme conformation 4 undergoing the first-step self-splicing","holo_pdb":"7YCI","ligand":"GTP","holo_chain":"N","holo_rna_chain":"N","lig_auth_chain":"N","nearest_rna_chain":"N","lig_resseq":"501","apo_pdb":"7XD5","apo_chain":"N","holo_len":389,"apo_len":400,"pocket_size":22,"thumb":{"holo":[[0.555,0.179],[0.551,0.173],[0.575,0.18],[0.615,0.19],[0.659,0.198],[0.698,0.193],[0.733,0.176],[0.775,0.126],[0.789,0.144],[0.733,0.133],[0.751,0.171],[0.757,0.182],[0.766,0.164],[0.774,0.129],[0.768,0.088],[0.749,0.052],[0.721,0.022],[0.683,0.012],[0.644,0.024],[0.606,0.05],[0.598,0.042],[0.572,0.035],[0.597,0.035],[0.617,0.072],[0.631,0.113],[0.626,0.129],[0.625,0.128],[0.636,0.109],[0.655,0.078],[0.688,0.057],[0.73,0.037],[0.768,0.039],[0.801,0.06],[0.823,0.102],[0.83,0.143],[0.825,0.178],[0.845,0.222],[0.839,0.25],[0.822,0.288],[0.814,0.321],[0.822,0.348],[0.85,0.366],[0.897,0.375],[0.937,0.388],[0.965,0.399],[0.973,0.413],[0.959,0.434],[0.929,0.461],[0.897,0.49],[0.91,0.514],[0.864,0.508],[0.83,0.519],[0.793,0.542],[0.74,0.574],[0.724,0.594],[0.745,0.592],[0.771,0.57],[0.795,0.535],[0.822,0.502],[0.832,0.483],[0.838,0.481],[0.852,0.463],[0.874,0.433],[0.907,0.4],[0.935,0.373],[0.954,0.351],[0.957,0.333],[0.943,0.314],[0.912,0.314],[0.871,0.311],[0.829,0.304],[0.792,0.293],[0.778,0.268],[0.792,0.237],[0.785,0.213],[0.776,0.246],[0.791,0.287],[0.786,0.329],[0.769,0.365],[0.741,0.386],[0.701,0.391],[0.657,0.387],[0.616,0.399],[0.585,0.392],[0.553,0.369],[0.533,0.361],[0.483,0.337],[0.454,0.304],[0.46,0.267],[0.465,0.223],[0.48,0.184],[0.495,0.168],[0.509,0.174],[0.532,0.155],[0.519,0.163],[0.491,0.185],[0.452,0.204],[0.411,0.202],[0.371,0.19],[0.35,0.154],[0.34,0.109],[0.327,0.054],[0.319,0.066],[0.317,0.115],[0.302,0.163],[0.358,0.14],[0.387,0.108],[0.394,0.077],[0.382,0.056],[0.407,0.025],[0.34,0.035],[0.308,0.056],[0.287,0.091],[0.294,0.129],[0.314,0.179],[0.343,0.204],[0.378,0.204],[0.413,0.191],[0.446,0.221],[0.491,0.226],[0.523,0.218],[0.54,0.207],[0.537,0.209],[0.519,0.223],[0.495,0.252],[0.474,0.292],[0.478,0.328],[0.48,0.365],[0.509,0.394],[0.551,0.405],[0.595,0.422],[0.608,0.388],[0.611,0.364],[0.576,0.351],[0.534,0.349],[0.491,0.342],[0.457,0.325],[0.438,0.292],[0.439,0.252],[0.456,0.213],[0.483,0.181],[0.502,0.165],[0.496,0.165],[0.472,0.157],[0.469,0.109],[0.495,0.079],[0.521,0.116],[0.513,0.139],[0.579,0.15],[0.583,0.148],[0.561,0.125],[0.603,0.117],[0.588,0.07],[0.553,0.047],[0.51,0.042],[0.475,0.07],[0.465,0.104],[0.402,0.122],[0.375,0.06],[0.424,0.105],[0.427,0.133],[0.418,0.17],[0.457,0.194],[0.466,0.235],[0.448,0.264],[0.421,0.201],[0.37,0.194],[0.417,0.155],[0.356,0.173],[0.313,0.161],[0.286,0.13],[0.277,0.088],[0.296,0.052],[0.324,0.028],[0.356,0.028],[0.382,0.039],[0.382,0.059],[0.387,0.057],[0.432,0.063],[0.412,0.065],[0.394,0.086],[0.392,0.128],[0.394,0.174],[0.414,0.214],[0.45,0.234],[0.487,0.223],[0.542,0.223],[0.549,0.213],[0.553,0.19],[0.598,0.175],[0.546,0.205],[0.526,0.213],[0.504,0.239],[0.494,0.275],[0.506,0.314],[0.535,0.346],[0.576,0.364],[0.618,0.389],[0.659,0.384],[0.676,0.36],[0.677,0.336],[0.665,0.333],[0.648,0.35],[0.641,0.383],[0.654,0.43],[0.608,0.458],[0.624,0.493],[0.664,0.508],[0.706,0.51],[0.748,0.504],[0.773,0.496],[0.776,0.493],[0.762,0.504],[0.735,0.524],[0.706,0.552],[0.709,0.6],[0.737,0.587],[0.691,0.632],[0.671,0.595],[0.666,0.554],[0.677,0.515],[0.7,0.475],[0.728,0.45],[0.746,0.437],[0.744,0.437],[0.724,0.447],[0.687,0.457],[0.635,0.436],[0.606,0.473],[0.597,0.419],[0.592,0.377],[0.601,0.335],[0.617,0.319],[0.625,0.324],[0.629,0.299],[0.631,0.267],[0.6,0.325],[0.546,0.328],[0.515,0.296],[0.541,0.279],[0.529,0.322],[0.504,0.318],[0.464,0.341],[0.49,0.37],[0.512,0.413],[0.551,0.432],[0.599,0.435],[0.636,0.413],[0.658,0.382],[0.664,0.335],[0.666,0.289],[0.647,0.311],[0.658,0.327],[0.69,0.341],[0.731,0.346],[0.776,0.352],[0.819,0.336],[0.827,0.298],[0.823,0.257],[0.804,0.21],[0.792,0.177],[0.782,0.164],[0.782,0.17],[0.795,0.189],[0.825,0.212],[0.864,0.24],[0.908,0.248],[0.932,0.222],[0.972,0.179],[0.942,0.181],[0.929,0.213],[0.905,0.247],[0.872,0.266],[0.83,0.267],[0.79,0.251],[0.757,0.226],[0.738,0.205],[0.73,0.196],[0.729,0.216],[0.738,0.261],[0.702,0.211],[0.656,0.225],[0.63,0.26],[0.605,0.301],[0.547,0.27],[0.568,0.333],[0.622,0.332],[0.632,0.369],[0.603,0.4],[0.567,0.432],[0.526,0.426],[0.492,0.403],[0.475,0.367],[0.472,0.332],[0.42,0.337],[0.378,0.338],[0.35,0.362],[0.326,0.382],[0.313,0.376],[0.318,0.352],[0.335,0.31],[0.344,0.269],[0.348,0.232],[0.313,0.193],[0.343,0.21],[0.376,0.224],[0.389,0.25],[0.398,0.271],[0.392,0.307],[0.381,0.35],[0.364,0.39],[0.388,0.44],[0.415,0.473],[0.432,0.515],[0.444,0.555],[0.455,0.58],[0.467,0.587],[0.484,0.574],[0.508,0.549],[0.538,0.517],[0.568,0.498],[0.589,0.46],[0.619,0.465],[0.647,0.488],[0.675,0.523],[0.708,0.548],[0.774,0.512],[0.778,0.479],[0.764,0.466],[0.745,0.488],[0.723,0.523],[0.704,0.558],[0.689,0.582],[0.666,0.589],[0.642,0.573],[0.618,0.542],[0.592,0.523],[0.565,0.477],[0.536,0.452],[0.509,0.459],[0.48,0.487],[0.45,0.521],[0.425,0.551],[0.407,0.571],[0.393,0.575],[0.382,0.548],[0.38,0.525],[0.31,0.526],[0.359,0.483],[0.337,0.44],[0.3,0.425],[0.262,0.43],[0.223,0.45],[0.196,0.484],[0.182,0.52],[0.183,0.544],[0.181,0.53],[0.193,0.534],[0.185,0.501],[0.162,0.462],[0.126,0.433],[0.088,0.426],[0.056,0.445],[0.046,0.48],[0.016,0.519],[0.038,0.54],[0.054,0.55],[0.069,0.526],[0.081,0.486],[0.105,0.444],[0.143,0.423],[0.181,0.425],[0.21,0.453],[0.228,0.491],[0.248,0.527],[0.243,0.551],[0.236,0.554],[0.237,0.534],[0.249,0.502],[0.275,0.466],[0.312,0.439],[0.35,0.437],[0.36,0.416],[0.353,0.426],[0.363,0.425],[0.396,0.405],[0.445,0.39],[0.476,0.412],[0.483,0.353]],"apo":[[0.521,0.169],[0.57,0.173],[0.551,0.162],[0.552,0.165],[0.577,0.177],[0.617,0.189],[0.664,0.191],[0.702,0.183],[0.736,0.168],[0.776,0.115],[0.797,0.143],[0.734,0.122],[0.762,0.168],[0.767,0.174],[0.773,0.153],[0.779,0.119],[0.776,0.077],[0.752,0.04],[0.726,0.01],[0.686,0.0],[0.646,0.012],[0.608,0.039],[0.594,0.029],[0.57,0.024],[0.597,0.023],[0.617,0.062],[0.631,0.099],[0.631,0.121],[0.627,0.118],[0.634,0.097],[0.655,0.068],[0.691,0.042],[0.734,0.023],[0.772,0.024],[0.808,0.048],[0.83,0.089],[0.84,0.135],[0.837,0.169],[0.859,0.21],[0.852,0.245],[0.836,0.286],[0.829,0.321],[0.84,0.348],[0.869,0.364],[0.909,0.372],[0.956,0.378],[0.982,0.395],[0.992,0.41],[0.979,0.43],[0.949,0.456],[0.917,0.485],[0.905,0.541],[0.867,0.525],[0.843,0.529],[0.794,0.555],[0.749,0.588],[0.739,0.609],[0.758,0.603],[0.777,0.579],[0.81,0.541],[0.831,0.51],[0.84,0.49],[0.848,0.492],[0.869,0.463],[0.893,0.43],[0.927,0.4],[0.956,0.374],[0.977,0.351],[0.968,0.328],[0.981,0.313],[0.936,0.31],[0.891,0.31],[0.85,0.304],[0.812,0.293],[0.793,0.269],[0.803,0.233],[0.796,0.207],[0.789,0.241],[0.803,0.285],[0.797,0.328],[0.78,0.365],[0.75,0.385],[0.712,0.39],[0.662,0.39],[0.624,0.403],[0.591,0.401],[0.559,0.375],[0.531,0.364],[0.484,0.347],[0.454,0.309],[0.458,0.268],[0.462,0.222],[0.475,0.182],[0.492,0.167],[0.505,0.167],[0.528,0.152],[0.517,0.16],[0.488,0.181],[0.446,0.196],[0.404,0.195],[0.364,0.184],[0.343,0.147],[0.332,0.102],[0.313,0.049],[0.306,0.058],[0.302,0.109],[0.297,0.158],[0.349,0.134],[0.378,0.1],[0.382,0.066],[0.369,0.048],[0.389,0.007],[0.324,0.026],[0.29,0.05],[0.273,0.089],[0.278,0.133],[0.295,0.177],[0.332,0.203],[0.369,0.201],[0.407,0.186],[0.441,0.22],[0.488,0.225],[0.52,0.214],[0.537,0.202],[0.533,0.205],[0.513,0.219],[0.49,0.251],[0.473,0.292],[0.475,0.331],[0.482,0.37],[0.511,0.398],[0.552,0.411],[0.6,0.433],[0.616,0.394],[0.615,0.369],[0.578,0.358],[0.536,0.355],[0.495,0.344],[0.455,0.328],[0.435,0.295],[0.435,0.252],[0.451,0.21],[0.475,0.178],[0.494,0.161],[0.491,0.16],[0.467,0.15],[0.464,0.103],[0.488,0.067],[0.517,0.104],[0.506,0.144],[0.576,0.139],[0.582,0.138],[0.56,0.116],[0.601,0.104],[0.586,0.058],[0.548,0.034],[0.503,0.031],[0.467,0.061],[0.454,0.097],[0.392,0.114],[0.358,0.054],[0.414,0.099],[0.418,0.129],[0.41,0.166],[0.449,0.189],[0.461,0.232],[0.441,0.26],[0.416,0.198],[0.361,0.19],[0.41,0.156],[0.343,0.17],[0.298,0.157],[0.272,0.125],[0.264,0.082],[0.282,0.042],[0.31,0.021],[0.346,0.02],[0.372,0.027],[0.374,0.045],[0.38,0.044],[0.444,0.042],[0.402,0.053],[0.386,0.08],[0.383,0.122],[0.388,0.167],[0.406,0.206],[0.443,0.226],[0.488,0.222],[0.538,0.221],[0.548,0.212],[0.55,0.189],[0.597,0.168],[0.544,0.201],[0.524,0.213],[0.499,0.24],[0.491,0.278],[0.505,0.318],[0.537,0.349],[0.578,0.366],[0.622,0.392],[0.663,0.388],[0.681,0.362],[0.681,0.341],[0.669,0.339],[0.652,0.354],[0.647,0.387],[0.658,0.428],[0.616,0.464],[0.636,0.497],[0.674,0.515],[0.719,0.518],[0.76,0.51],[0.79,0.499],[0.802,0.494],[0.786,0.511],[0.761,0.527],[0.75,0.575],[0.735,0.612],[0.761,0.639],[0.729,0.639],[0.696,0.601],[0.686,0.56],[0.701,0.52],[0.73,0.48],[0.753,0.452],[0.764,0.443],[0.759,0.446],[0.737,0.457],[0.699,0.462],[0.648,0.451],[0.611,0.48],[0.603,0.426],[0.597,0.383],[0.606,0.341],[0.62,0.324],[0.627,0.327],[0.631,0.3],[0.633,0.266],[0.598,0.32],[0.55,0.329],[0.518,0.298],[0.536,0.282],[0.529,0.326],[0.5,0.323],[0.46,0.342],[0.487,0.373],[0.509,0.418],[0.551,0.436],[0.597,0.44],[0.635,0.418],[0.657,0.387],[0.668,0.338],[0.669,0.291],[0.652,0.312],[0.662,0.331],[0.697,0.343],[0.741,0.348],[0.784,0.351],[0.827,0.336],[0.841,0.295],[0.835,0.252],[0.816,0.204],[0.8,0.169],[0.791,0.158],[0.792,0.162],[0.807,0.179],[0.838,0.201],[0.88,0.225],[0.926,0.233],[0.944,0.201],[1.0,0.184],[0.984,0.186],[0.951,0.221],[0.918,0.243],[0.882,0.259],[0.84,0.258],[0.796,0.243],[0.765,0.22],[0.747,0.2],[0.739,0.19],[0.74,0.212],[0.745,0.256],[0.705,0.213],[0.658,0.223],[0.632,0.262],[0.605,0.305],[0.546,0.273],[0.567,0.335],[0.622,0.333],[0.633,0.374],[0.606,0.406],[0.569,0.437],[0.524,0.433],[0.488,0.41],[0.468,0.372],[0.457,0.345],[0.411,0.343],[0.367,0.353],[0.34,0.371],[0.314,0.389],[0.302,0.38],[0.307,0.353],[0.325,0.313],[0.334,0.271],[0.338,0.23],[0.307,0.185],[0.329,0.205],[0.364,0.219],[0.378,0.246],[0.388,0.272],[0.384,0.31],[0.369,0.356],[0.354,0.399],[0.377,0.451],[0.401,0.487],[0.422,0.53],[0.435,0.567],[0.447,0.593],[0.465,0.6],[0.485,0.586],[0.51,0.562],[0.536,0.528],[0.576,0.51],[0.592,0.469],[0.623,0.469],[0.652,0.497],[0.681,0.529],[0.714,0.551],[0.783,0.517],[0.789,0.485],[0.784,0.476],[0.754,0.497],[0.732,0.535],[0.714,0.571],[0.698,0.594],[0.677,0.6],[0.65,0.585],[0.623,0.555],[0.593,0.532],[0.563,0.486],[0.529,0.462],[0.503,0.471],[0.477,0.499],[0.449,0.533],[0.421,0.564],[0.399,0.584],[0.385,0.584],[0.373,0.568],[0.367,0.535],[0.306,0.527],[0.35,0.491],[0.323,0.444],[0.285,0.432],[0.247,0.438],[0.213,0.462],[0.185,0.497],[0.165,0.533],[0.153,0.555],[0.15,0.541],[0.163,0.536],[0.143,0.487],[0.117,0.444],[0.083,0.424],[0.053,0.391],[0.015,0.413],[0.014,0.452],[0.005,0.479],[0.021,0.517],[0.0,0.516],[0.034,0.491],[0.054,0.458],[0.099,0.427],[0.128,0.415],[0.175,0.426],[0.2,0.461],[0.206,0.503],[0.207,0.556],[0.212,0.569],[0.215,0.565],[0.22,0.546],[0.235,0.515],[0.259,0.475],[0.295,0.448],[0.336,0.445],[0.343,0.419],[0.343,0.435],[0.359,0.434],[0.389,0.42],[0.435,0.406],[0.466,0.428],[0.483,0.443],[0.499,0.39],[0.526,0.369],[0.53,0.339],[0.524,0.319],[0.542,0.315],[0.549,0.236],[0.522,0.221],[0.522,0.218],[0.481,0.208]]},"method":"EM","resolution":2.98,"rna_type":"Group I intron ribozyme","rna_group":"Catalytic (ribozyme)","num_chains":2,"total_rna_len":395,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":97,"pocket_motifs":["junction","internal loop","bulge","stem","single strand"],"rmsd":2.44,"host_chain_rmsd":2.45,"pocket_rmsd":3.4,"lig_bsa":322.2,"ligand_burial":0.535,"tm_score":0.946,"rg_apo":38.05,"rg_holo":36.22,"rg_delta":-1.83,"bp_rewire_src":"dssr","bp_formed":21,"bp_broken":26,"bp_conserved":167,"bp_formed_wc":3,"bp_broken_wc":6,"bp_conserved_wc":128,"maxd":15.0,"water":0,"hbonds":5,"mw":523.2,"logp":-2.34,"thumb_img":true,"thumb_v":1785451630,"apo_alts":[{"pdb":"6WLS","rmsd":6.15,"host_chain_rmsd":6.15,"apo_chain":"A","apo_len":388,"identity":100,"global_identity":99,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.88,"rg_delta":-2.73,"pocket_rmsd":5.42,"maxd":53.5,"bp_formed":34,"bp_broken":30,"bp_conserved":148},{"pdb":"7R6M","rmsd":2.08,"host_chain_rmsd":2.08,"apo_chain":"A","apo_len":356,"identity":96,"global_identity":95,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.885,"rg_delta":-0.45,"pocket_rmsd":1.42,"maxd":8.3,"bp_formed":62,"bp_broken":48,"bp_conserved":126},{"pdb":"7R6N","rmsd":2.74,"host_chain_rmsd":2.74,"apo_chain":"A","apo_len":354,"identity":99,"global_identity":94,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.878,"rg_delta":-0.45,"pocket_rmsd":1.09,"maxd":25.7,"bp_formed":53,"bp_broken":38,"bp_conserved":129},{"pdb":"7XD3","rmsd":6.14,"host_chain_rmsd":6.14,"apo_chain":"N","apo_len":423,"identity":100,"global_identity":92,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.922,"rg_delta":-2.36,"pocket_rmsd":2.11,"maxd":51.1,"bp_formed":34,"bp_broken":39,"bp_conserved":148},{"pdb":"7XD4","rmsd":3.94,"host_chain_rmsd":3.94,"apo_chain":"N","apo_len":423,"identity":100,"global_identity":93,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.923,"rg_delta":-2.13,"pocket_rmsd":1.92,"maxd":27.7,"bp_formed":34,"bp_broken":44,"bp_conserved":148},{"pdb":"7XD7","rmsd":5.95,"host_chain_rmsd":5.95,"apo_chain":"N","apo_len":405,"identity":100,"global_identity":97,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.928,"rg_delta":-2.43,"pocket_rmsd":3.04,"maxd":49.1,"bp_formed":24,"bp_broken":29,"bp_conserved":158},{"pdb":"7XSK","rmsd":6.11,"host_chain_rmsd":6.11,"apo_chain":"N","apo_len":388,"identity":100,"global_identity":99,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.873,"rg_delta":-0.48,"pocket_rmsd":11.9,"maxd":49.1,"bp_formed":25,"bp_broken":28,"bp_conserved":157},{"pdb":"7XSL","rmsd":5.89,"host_chain_rmsd":5.89,"apo_chain":"N","apo_len":388,"identity":100,"global_identity":99,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.877,"rg_delta":-0.51,"pocket_rmsd":11.32,"maxd":37.4,"bp_formed":24,"bp_broken":31,"bp_conserved":158},{"pdb":"7XSM","rmsd":5.68,"host_chain_rmsd":5.68,"apo_chain":"N","apo_len":388,"identity":100,"global_identity":99,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.868,"rg_delta":0.01,"pocket_rmsd":8.35,"maxd":35.9,"bp_formed":25,"bp_broken":31,"bp_conserved":157},{"pdb":"7XSN","rmsd":4.15,"host_chain_rmsd":4.15,"apo_chain":"N","apo_len":387,"identity":100,"global_identity":99,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.966,"rg_delta":-0.22,"pocket_rmsd":0.75,"maxd":43.7,"bp_formed":16,"bp_broken":30,"bp_conserved":166}],"n_apo_copies":0},{"id":"7ZJ4_1TU_E_C_402_pocket","title":"7ZJ4 (1TU) vs 7ZJ5 (apo)","struct_title":"Ligand bound state of a brocolli-pepper aptamer FRET tile","holo_pdb":"7ZJ4","ligand":"1TU","holo_chain":"E","holo_rna_chain":"E","lig_auth_chain":"E","nearest_rna_chain":"E","lig_resseq":"402","apo_pdb":"7ZJ5","apo_chain":"E","holo_len":374,"apo_len":374,"pocket_size":19,"thumb":{"holo":[[0.035,0.093],[0.041,0.122],[0.041,0.149],[0.042,0.167],[0.046,0.171],[0.053,0.162],[0.064,0.143],[0.083,0.122],[0.105,0.108],[0.127,0.105],[0.15,0.112],[0.166,0.132],[0.176,0.158],[0.18,0.18],[0.181,0.192],[0.183,0.194],[0.186,0.183],[0.195,0.163],[0.211,0.14],[0.233,0.136],[0.256,0.121],[0.286,0.096],[0.28,0.072],[0.271,0.045],[0.26,0.022],[0.249,0.005],[0.234,0.0],[0.216,0.008],[0.196,0.026],[0.176,0.044],[0.159,0.054],[0.133,0.075],[0.152,0.045],[0.161,0.077],[0.18,0.075],[0.195,0.075],[0.211,0.063],[0.23,0.043],[0.25,0.025],[0.269,0.013],[0.285,0.012],[0.297,0.025],[0.307,0.047],[0.318,0.073],[0.33,0.094],[0.344,0.106],[0.358,0.101],[0.372,0.085],[0.387,0.062],[0.402,0.038],[0.427,0.05],[0.455,0.051],[0.484,0.077],[0.467,0.1],[0.449,0.11],[0.433,0.106],[0.419,0.089],[0.409,0.064],[0.401,0.04],[0.391,0.024],[0.378,0.02],[0.364,0.031],[0.349,0.052],[0.335,0.076],[0.32,0.094],[0.301,0.104],[0.278,0.128],[0.291,0.15],[0.302,0.177],[0.313,0.201],[0.323,0.217],[0.333,0.221],[0.346,0.213],[0.359,0.193],[0.375,0.169],[0.399,0.183],[0.427,0.189],[0.455,0.216],[0.44,0.231],[0.425,0.23],[0.412,0.216],[0.4,0.192],[0.388,0.168],[0.376,0.149],[0.364,0.139],[0.35,0.143],[0.335,0.16],[0.319,0.183],[0.306,0.204],[0.294,0.215],[0.28,0.216],[0.251,0.243],[0.26,0.269],[0.271,0.294],[0.282,0.318],[0.294,0.329],[0.309,0.327],[0.326,0.314],[0.344,0.292],[0.362,0.274],[0.38,0.266],[0.396,0.262],[0.409,0.276],[0.42,0.301],[0.431,0.327],[0.443,0.346],[0.455,0.355],[0.466,0.349],[0.479,0.331],[0.492,0.308],[0.507,0.284],[0.525,0.267],[0.546,0.264],[0.568,0.24],[0.554,0.22],[0.541,0.194],[0.529,0.17],[0.518,0.153],[0.508,0.148],[0.497,0.155],[0.481,0.173],[0.458,0.169],[0.428,0.16],[0.404,0.14],[0.416,0.145],[0.427,0.163],[0.438,0.188],[0.451,0.213],[0.467,0.227],[0.481,0.231],[0.493,0.224],[0.508,0.206],[0.524,0.183],[0.537,0.163],[0.547,0.151],[0.561,0.151],[0.586,0.126],[0.575,0.103],[0.563,0.078],[0.55,0.056],[0.536,0.043],[0.517,0.041],[0.487,0.041],[0.458,0.03],[0.427,0.022],[0.438,0.038],[0.449,0.061],[0.46,0.086],[0.476,0.105],[0.491,0.113],[0.504,0.109],[0.519,0.092],[0.536,0.07],[0.554,0.054],[0.571,0.048],[0.585,0.055],[0.598,0.073],[0.612,0.097],[0.628,0.118],[0.643,0.132],[0.657,0.131],[0.669,0.115],[0.68,0.092],[0.69,0.066],[0.701,0.044],[0.715,0.034],[0.731,0.037],[0.745,0.052],[0.759,0.076],[0.776,0.093],[0.788,0.112],[0.825,0.118],[0.829,0.131],[0.808,0.165],[0.787,0.126],[0.801,0.116],[0.815,0.097],[0.832,0.073],[0.855,0.067],[0.879,0.075],[0.898,0.095],[0.914,0.119],[0.926,0.143],[0.926,0.134],[0.935,0.149],[0.914,0.121],[0.903,0.153],[0.894,0.157],[0.893,0.159],[0.888,0.149],[0.859,0.143],[0.871,0.169],[0.885,0.126],[0.87,0.104],[0.844,0.078],[0.812,0.092],[0.833,0.065],[0.828,0.06],[0.856,0.048],[0.828,0.05],[0.825,0.023],[0.798,0.054],[0.797,0.061],[0.786,0.072],[0.77,0.095],[0.759,0.112],[0.751,0.116],[0.739,0.106],[0.724,0.086],[0.707,0.064],[0.691,0.047],[0.676,0.041],[0.662,0.046],[0.652,0.065],[0.641,0.089],[0.631,0.114],[0.62,0.132],[0.606,0.139],[0.569,0.168],[0.576,0.193],[0.587,0.22],[0.603,0.24],[0.623,0.248],[0.644,0.244],[0.666,0.23],[0.684,0.209],[0.696,0.189],[0.703,0.178],[0.706,0.178],[0.708,0.191],[0.712,0.213],[0.723,0.238],[0.733,0.248],[0.756,0.253],[0.783,0.265],[0.803,0.264],[0.825,0.235],[0.802,0.229],[0.779,0.239],[0.742,0.248],[0.76,0.267],[0.782,0.277],[0.805,0.269],[0.825,0.251],[0.852,0.234],[0.85,0.205],[0.848,0.174],[0.857,0.168],[0.868,0.165],[0.886,0.179],[0.904,0.197],[0.926,0.213],[0.949,0.221],[0.968,0.215],[0.975,0.189],[0.992,0.172],[0.969,0.155],[0.966,0.162],[0.951,0.184],[0.943,0.209],[0.931,0.231],[0.915,0.239],[0.896,0.233],[0.872,0.214],[0.844,0.215],[0.845,0.18],[0.834,0.179],[0.807,0.197],[0.81,0.197],[0.807,0.218],[0.796,0.243],[0.776,0.262],[0.751,0.272],[0.727,0.267],[0.708,0.26],[0.69,0.244],[0.678,0.217],[0.671,0.193],[0.668,0.175],[0.665,0.169],[0.658,0.176],[0.648,0.194],[0.631,0.216],[0.612,0.233],[0.589,0.245],[0.562,0.275],[0.574,0.301],[0.584,0.327],[0.595,0.347],[0.605,0.354],[0.617,0.349],[0.632,0.333],[0.649,0.312],[0.667,0.291],[0.684,0.286],[0.707,0.271],[0.696,0.304],[0.685,0.279],[0.664,0.277],[0.647,0.273],[0.63,0.28],[0.612,0.297],[0.595,0.319],[0.579,0.338],[0.566,0.348],[0.556,0.345],[0.548,0.328],[0.537,0.305],[0.522,0.281],[0.504,0.267],[0.486,0.266],[0.47,0.278],[0.456,0.3],[0.441,0.325],[0.427,0.344],[0.414,0.351],[0.403,0.345],[0.392,0.328],[0.381,0.304],[0.367,0.283],[0.357,0.262],[0.342,0.257],[0.326,0.26],[0.309,0.275],[0.29,0.296],[0.272,0.312],[0.257,0.319],[0.244,0.314],[0.235,0.296],[0.225,0.27],[0.211,0.245],[0.195,0.23],[0.181,0.223],[0.166,0.229],[0.151,0.248],[0.134,0.27],[0.117,0.289],[0.105,0.3],[0.097,0.295],[0.077,0.301],[0.09,0.265],[0.107,0.269],[0.124,0.283],[0.136,0.3],[0.148,0.307],[0.16,0.3],[0.173,0.282],[0.188,0.258],[0.203,0.237],[0.22,0.225],[0.239,0.226],[0.273,0.202],[0.269,0.176],[0.259,0.15],[0.244,0.129],[0.223,0.115],[0.201,0.115],[0.178,0.129],[0.16,0.15],[0.15,0.173],[0.145,0.188],[0.144,0.188],[0.144,0.182],[0.138,0.162],[0.129,0.136],[0.113,0.113],[0.095,0.099],[0.074,0.096],[0.051,0.107],[0.031,0.127],[0.014,0.146],[0.004,0.156],[0.002,0.154],[0.004,0.139]],"apo":[[0.033,0.091],[0.04,0.117],[0.04,0.146],[0.042,0.167],[0.046,0.173],[0.052,0.165],[0.061,0.145],[0.078,0.123],[0.099,0.108],[0.122,0.104],[0.146,0.109],[0.163,0.128],[0.173,0.154],[0.178,0.177],[0.179,0.19],[0.18,0.193],[0.184,0.184],[0.194,0.164],[0.209,0.142],[0.23,0.134],[0.253,0.124],[0.286,0.094],[0.278,0.071],[0.268,0.044],[0.258,0.021],[0.247,0.006],[0.232,0.003],[0.213,0.012],[0.193,0.031],[0.172,0.049],[0.155,0.057],[0.138,0.077],[0.148,0.047],[0.16,0.077],[0.178,0.076],[0.192,0.078],[0.208,0.067],[0.227,0.049],[0.247,0.03],[0.266,0.017],[0.282,0.015],[0.295,0.025],[0.306,0.045],[0.316,0.07],[0.328,0.092],[0.342,0.107],[0.355,0.105],[0.37,0.092],[0.385,0.07],[0.403,0.048],[0.43,0.047],[0.456,0.043],[0.486,0.077],[0.469,0.096],[0.45,0.107],[0.433,0.103],[0.418,0.086],[0.407,0.061],[0.4,0.037],[0.39,0.025],[0.375,0.025],[0.361,0.037],[0.346,0.059],[0.331,0.082],[0.315,0.098],[0.3,0.104],[0.274,0.129],[0.29,0.149],[0.301,0.175],[0.312,0.2],[0.323,0.217],[0.334,0.224],[0.346,0.216],[0.359,0.197],[0.375,0.172],[0.399,0.184],[0.427,0.191],[0.456,0.216],[0.441,0.231],[0.426,0.231],[0.413,0.216],[0.401,0.192],[0.388,0.168],[0.375,0.149],[0.363,0.141],[0.35,0.146],[0.336,0.164],[0.32,0.187],[0.305,0.207],[0.294,0.217],[0.281,0.216],[0.251,0.244],[0.26,0.269],[0.271,0.294],[0.282,0.317],[0.294,0.329],[0.308,0.328],[0.325,0.316],[0.343,0.295],[0.362,0.276],[0.379,0.266],[0.395,0.263],[0.409,0.275],[0.42,0.299],[0.431,0.324],[0.443,0.344],[0.455,0.353],[0.466,0.349],[0.478,0.332],[0.491,0.309],[0.506,0.285],[0.524,0.268],[0.541,0.263],[0.57,0.236],[0.556,0.219],[0.544,0.193],[0.531,0.169],[0.52,0.152],[0.509,0.147],[0.497,0.154],[0.482,0.173],[0.458,0.169],[0.431,0.16],[0.402,0.141],[0.414,0.145],[0.426,0.163],[0.438,0.187],[0.452,0.212],[0.468,0.227],[0.482,0.23],[0.493,0.224],[0.507,0.206],[0.522,0.182],[0.537,0.163],[0.548,0.151],[0.561,0.15],[0.584,0.126],[0.572,0.104],[0.56,0.079],[0.548,0.055],[0.534,0.04],[0.515,0.038],[0.488,0.04],[0.462,0.019],[0.429,0.021],[0.436,0.035],[0.446,0.058],[0.458,0.083],[0.474,0.102],[0.49,0.11],[0.504,0.105],[0.52,0.086],[0.537,0.064],[0.555,0.049],[0.57,0.045],[0.583,0.054],[0.594,0.073],[0.608,0.098],[0.624,0.118],[0.641,0.13],[0.657,0.129],[0.67,0.112],[0.682,0.089],[0.691,0.063],[0.702,0.042],[0.715,0.032],[0.729,0.037],[0.744,0.054],[0.759,0.077],[0.774,0.098],[0.787,0.113],[0.825,0.119],[0.835,0.132],[0.813,0.167],[0.793,0.132],[0.809,0.12],[0.821,0.095],[0.837,0.072],[0.86,0.066],[0.882,0.073],[0.901,0.095],[0.916,0.118],[0.922,0.137],[0.922,0.128],[0.926,0.145],[0.912,0.113],[0.894,0.14],[0.887,0.14],[0.885,0.149],[0.883,0.146],[0.863,0.136],[0.884,0.168],[0.888,0.123],[0.87,0.1],[0.844,0.084],[0.812,0.096],[0.834,0.068],[0.831,0.061],[0.859,0.052],[0.831,0.051],[0.843,0.037],[0.804,0.062],[0.799,0.065],[0.79,0.077],[0.775,0.101],[0.761,0.117],[0.75,0.118],[0.736,0.108],[0.721,0.087],[0.706,0.064],[0.69,0.047],[0.675,0.04],[0.662,0.044],[0.654,0.062],[0.643,0.086],[0.632,0.11],[0.62,0.128],[0.606,0.137],[0.57,0.166],[0.579,0.191],[0.59,0.218],[0.605,0.238],[0.624,0.247],[0.643,0.242],[0.665,0.228],[0.683,0.208],[0.696,0.188],[0.704,0.175],[0.71,0.174],[0.712,0.186],[0.716,0.207],[0.726,0.234],[0.733,0.245],[0.76,0.25],[0.784,0.262],[0.804,0.256],[0.826,0.243],[0.804,0.227],[0.778,0.227],[0.746,0.239],[0.764,0.258],[0.785,0.271],[0.81,0.27],[0.834,0.253],[0.86,0.236],[0.846,0.214],[0.857,0.192],[0.856,0.168],[0.866,0.176],[0.88,0.188],[0.9,0.203],[0.923,0.217],[0.946,0.227],[0.967,0.226],[0.98,0.203],[1.0,0.189],[0.979,0.166],[0.975,0.173],[0.959,0.194],[0.946,0.217],[0.934,0.236],[0.917,0.245],[0.895,0.241],[0.87,0.227],[0.846,0.224],[0.848,0.191],[0.834,0.184],[0.812,0.194],[0.818,0.2],[0.819,0.222],[0.796,0.233],[0.776,0.253],[0.755,0.264],[0.734,0.257],[0.712,0.256],[0.694,0.239],[0.683,0.213],[0.674,0.189],[0.669,0.173],[0.665,0.167],[0.657,0.175],[0.646,0.194],[0.629,0.215],[0.611,0.234],[0.588,0.243],[0.561,0.275],[0.574,0.3],[0.585,0.325],[0.596,0.344],[0.606,0.351],[0.618,0.346],[0.634,0.329],[0.653,0.308],[0.673,0.292],[0.69,0.283],[0.71,0.268],[0.697,0.298],[0.675,0.279],[0.655,0.288],[0.649,0.264],[0.628,0.276],[0.61,0.294],[0.594,0.317],[0.579,0.337],[0.567,0.347],[0.557,0.344],[0.549,0.329],[0.538,0.305],[0.524,0.282],[0.505,0.267],[0.487,0.266],[0.47,0.278],[0.455,0.3],[0.44,0.326],[0.426,0.344],[0.414,0.35],[0.403,0.344],[0.392,0.326],[0.381,0.302],[0.37,0.277],[0.358,0.26],[0.34,0.26],[0.326,0.261],[0.308,0.277],[0.29,0.298],[0.271,0.313],[0.256,0.32],[0.244,0.315],[0.235,0.297],[0.225,0.271],[0.212,0.246],[0.195,0.23],[0.18,0.225],[0.167,0.233],[0.152,0.251],[0.134,0.273],[0.118,0.291],[0.105,0.3],[0.095,0.29],[0.083,0.294],[0.087,0.262],[0.108,0.271],[0.123,0.279],[0.135,0.298],[0.145,0.308],[0.159,0.303],[0.174,0.285],[0.188,0.261],[0.203,0.239],[0.219,0.227],[0.236,0.228],[0.273,0.202],[0.268,0.177],[0.258,0.15],[0.242,0.129],[0.222,0.115],[0.199,0.116],[0.177,0.129],[0.159,0.15],[0.148,0.172],[0.143,0.187],[0.142,0.187],[0.141,0.178],[0.137,0.157],[0.128,0.131],[0.113,0.109],[0.092,0.096],[0.069,0.097],[0.047,0.11],[0.027,0.131],[0.01,0.15],[0.001,0.158],[0.0,0.153],[0.001,0.134]]},"method":"EM","resolution":4.43,"rna_type":"Fluorescing aptamer","rna_group":"Aptamer","num_chains":1,"total_rna_len":374,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["junction","internal loop","bulge","stem"],"rmsd":1.67,"host_chain_rmsd":1.67,"pocket_rmsd":2.73,"lig_bsa":390.1,"ligand_burial":0.91,"tm_score":0.97,"rg_apo":53.26,"rg_holo":53.14,"rg_delta":-0.12,"bp_rewire_src":"dssr","bp_formed":7,"bp_broken":4,"bp_conserved":181,"bp_formed_wc":2,"bp_broken_wc":1,"bp_conserved_wc":151,"maxd":5.2,"water":0,"hbonds":5,"mw":254.2,"logp":2.01,"thumb_img":true,"thumb_v":1785389625,"apo_alts":[],"n_apo_copies":0},{"id":"7ZJ4_J93_E_B_401_pocket","title":"7ZJ4 (J93) vs 7ZJ5 (apo)","struct_title":"Ligand bound state of a brocolli-pepper aptamer FRET tile","holo_pdb":"7ZJ4","ligand":"J93","holo_chain":"E","holo_rna_chain":"E","lig_auth_chain":"E","nearest_rna_chain":"E","lig_resseq":"401","apo_pdb":"7ZJ5","apo_chain":"E","holo_len":374,"apo_len":374,"pocket_size":15,"thumb":{"holo":[[0.035,0.093],[0.041,0.122],[0.041,0.149],[0.042,0.167],[0.046,0.171],[0.053,0.162],[0.064,0.143],[0.083,0.122],[0.105,0.108],[0.127,0.105],[0.15,0.112],[0.166,0.132],[0.176,0.158],[0.18,0.18],[0.181,0.192],[0.183,0.194],[0.186,0.183],[0.195,0.163],[0.211,0.14],[0.233,0.136],[0.256,0.121],[0.286,0.096],[0.28,0.072],[0.271,0.045],[0.26,0.022],[0.249,0.005],[0.234,0.0],[0.216,0.008],[0.196,0.026],[0.176,0.044],[0.159,0.054],[0.133,0.075],[0.152,0.045],[0.161,0.077],[0.18,0.075],[0.195,0.075],[0.211,0.063],[0.23,0.043],[0.25,0.025],[0.269,0.013],[0.285,0.012],[0.297,0.025],[0.307,0.047],[0.318,0.073],[0.33,0.094],[0.344,0.106],[0.358,0.101],[0.372,0.085],[0.387,0.062],[0.402,0.038],[0.427,0.05],[0.455,0.051],[0.484,0.077],[0.467,0.1],[0.449,0.11],[0.433,0.106],[0.419,0.089],[0.409,0.064],[0.401,0.04],[0.391,0.024],[0.378,0.02],[0.364,0.031],[0.349,0.052],[0.335,0.076],[0.32,0.094],[0.301,0.104],[0.278,0.128],[0.291,0.15],[0.302,0.177],[0.313,0.201],[0.323,0.217],[0.333,0.221],[0.346,0.213],[0.359,0.193],[0.375,0.169],[0.399,0.183],[0.427,0.189],[0.455,0.216],[0.44,0.231],[0.425,0.23],[0.412,0.216],[0.4,0.192],[0.388,0.168],[0.376,0.149],[0.364,0.139],[0.35,0.143],[0.335,0.16],[0.319,0.183],[0.306,0.204],[0.294,0.215],[0.28,0.216],[0.251,0.243],[0.26,0.269],[0.271,0.294],[0.282,0.318],[0.294,0.329],[0.309,0.327],[0.326,0.314],[0.344,0.292],[0.362,0.274],[0.38,0.266],[0.396,0.262],[0.409,0.276],[0.42,0.301],[0.431,0.327],[0.443,0.346],[0.455,0.355],[0.466,0.349],[0.479,0.331],[0.492,0.308],[0.507,0.284],[0.525,0.267],[0.546,0.264],[0.568,0.24],[0.554,0.22],[0.541,0.194],[0.529,0.17],[0.518,0.153],[0.508,0.148],[0.497,0.155],[0.481,0.173],[0.458,0.169],[0.428,0.16],[0.404,0.14],[0.416,0.145],[0.427,0.163],[0.438,0.188],[0.451,0.213],[0.467,0.227],[0.481,0.231],[0.493,0.224],[0.508,0.206],[0.524,0.183],[0.537,0.163],[0.547,0.151],[0.561,0.151],[0.586,0.126],[0.575,0.103],[0.563,0.078],[0.55,0.056],[0.536,0.043],[0.517,0.041],[0.487,0.041],[0.458,0.03],[0.427,0.022],[0.438,0.038],[0.449,0.061],[0.46,0.086],[0.476,0.105],[0.491,0.113],[0.504,0.109],[0.519,0.092],[0.536,0.07],[0.554,0.054],[0.571,0.048],[0.585,0.055],[0.598,0.073],[0.612,0.097],[0.628,0.118],[0.643,0.132],[0.657,0.131],[0.669,0.115],[0.68,0.092],[0.69,0.066],[0.701,0.044],[0.715,0.034],[0.731,0.037],[0.745,0.052],[0.759,0.076],[0.776,0.093],[0.788,0.112],[0.825,0.118],[0.829,0.131],[0.808,0.165],[0.787,0.126],[0.801,0.116],[0.815,0.097],[0.832,0.073],[0.855,0.067],[0.879,0.075],[0.898,0.095],[0.914,0.119],[0.926,0.143],[0.926,0.134],[0.935,0.149],[0.914,0.121],[0.903,0.153],[0.894,0.157],[0.893,0.159],[0.888,0.149],[0.859,0.143],[0.871,0.169],[0.885,0.126],[0.87,0.104],[0.844,0.078],[0.812,0.092],[0.833,0.065],[0.828,0.06],[0.856,0.048],[0.828,0.05],[0.825,0.023],[0.798,0.054],[0.797,0.061],[0.786,0.072],[0.77,0.095],[0.759,0.112],[0.751,0.116],[0.739,0.106],[0.724,0.086],[0.707,0.064],[0.691,0.047],[0.676,0.041],[0.662,0.046],[0.652,0.065],[0.641,0.089],[0.631,0.114],[0.62,0.132],[0.606,0.139],[0.569,0.168],[0.576,0.193],[0.587,0.22],[0.603,0.24],[0.623,0.248],[0.644,0.244],[0.666,0.23],[0.684,0.209],[0.696,0.189],[0.703,0.178],[0.706,0.178],[0.708,0.191],[0.712,0.213],[0.723,0.238],[0.733,0.248],[0.756,0.253],[0.783,0.265],[0.803,0.264],[0.825,0.235],[0.802,0.229],[0.779,0.239],[0.742,0.248],[0.76,0.267],[0.782,0.277],[0.805,0.269],[0.825,0.251],[0.852,0.234],[0.85,0.205],[0.848,0.174],[0.857,0.168],[0.868,0.165],[0.886,0.179],[0.904,0.197],[0.926,0.213],[0.949,0.221],[0.968,0.215],[0.975,0.189],[0.992,0.172],[0.969,0.155],[0.966,0.162],[0.951,0.184],[0.943,0.209],[0.931,0.231],[0.915,0.239],[0.896,0.233],[0.872,0.214],[0.844,0.215],[0.845,0.18],[0.834,0.179],[0.807,0.197],[0.81,0.197],[0.807,0.218],[0.796,0.243],[0.776,0.262],[0.751,0.272],[0.727,0.267],[0.708,0.26],[0.69,0.244],[0.678,0.217],[0.671,0.193],[0.668,0.175],[0.665,0.169],[0.658,0.176],[0.648,0.194],[0.631,0.216],[0.612,0.233],[0.589,0.245],[0.562,0.275],[0.574,0.301],[0.584,0.327],[0.595,0.347],[0.605,0.354],[0.617,0.349],[0.632,0.333],[0.649,0.312],[0.667,0.291],[0.684,0.286],[0.707,0.271],[0.696,0.304],[0.685,0.279],[0.664,0.277],[0.647,0.273],[0.63,0.28],[0.612,0.297],[0.595,0.319],[0.579,0.338],[0.566,0.348],[0.556,0.345],[0.548,0.328],[0.537,0.305],[0.522,0.281],[0.504,0.267],[0.486,0.266],[0.47,0.278],[0.456,0.3],[0.441,0.325],[0.427,0.344],[0.414,0.351],[0.403,0.345],[0.392,0.328],[0.381,0.304],[0.367,0.283],[0.357,0.262],[0.342,0.257],[0.326,0.26],[0.309,0.275],[0.29,0.296],[0.272,0.312],[0.257,0.319],[0.244,0.314],[0.235,0.296],[0.225,0.27],[0.211,0.245],[0.195,0.23],[0.181,0.223],[0.166,0.229],[0.151,0.248],[0.134,0.27],[0.117,0.289],[0.105,0.3],[0.097,0.295],[0.077,0.301],[0.09,0.265],[0.107,0.269],[0.124,0.283],[0.136,0.3],[0.148,0.307],[0.16,0.3],[0.173,0.282],[0.188,0.258],[0.203,0.237],[0.22,0.225],[0.239,0.226],[0.273,0.202],[0.269,0.176],[0.259,0.15],[0.244,0.129],[0.223,0.115],[0.201,0.115],[0.178,0.129],[0.16,0.15],[0.15,0.173],[0.145,0.188],[0.144,0.188],[0.144,0.182],[0.138,0.162],[0.129,0.136],[0.113,0.113],[0.095,0.099],[0.074,0.096],[0.051,0.107],[0.031,0.127],[0.014,0.146],[0.004,0.156],[0.002,0.154],[0.004,0.139]],"apo":[[0.033,0.091],[0.04,0.117],[0.04,0.146],[0.042,0.167],[0.046,0.173],[0.052,0.165],[0.061,0.145],[0.078,0.123],[0.099,0.108],[0.122,0.104],[0.146,0.109],[0.163,0.128],[0.173,0.154],[0.178,0.177],[0.179,0.19],[0.18,0.193],[0.184,0.184],[0.194,0.164],[0.209,0.142],[0.23,0.134],[0.253,0.124],[0.286,0.094],[0.278,0.071],[0.268,0.044],[0.258,0.021],[0.247,0.006],[0.232,0.003],[0.213,0.012],[0.193,0.031],[0.172,0.049],[0.155,0.057],[0.138,0.077],[0.148,0.047],[0.16,0.077],[0.178,0.076],[0.192,0.078],[0.208,0.067],[0.227,0.049],[0.247,0.03],[0.266,0.017],[0.282,0.015],[0.295,0.025],[0.306,0.045],[0.316,0.07],[0.328,0.092],[0.342,0.107],[0.355,0.105],[0.37,0.092],[0.385,0.07],[0.403,0.048],[0.43,0.047],[0.456,0.043],[0.486,0.077],[0.469,0.096],[0.45,0.107],[0.433,0.103],[0.418,0.086],[0.407,0.061],[0.4,0.037],[0.39,0.025],[0.375,0.025],[0.361,0.037],[0.346,0.059],[0.331,0.082],[0.315,0.098],[0.3,0.104],[0.274,0.129],[0.29,0.149],[0.301,0.175],[0.312,0.2],[0.323,0.217],[0.334,0.224],[0.346,0.216],[0.359,0.197],[0.375,0.172],[0.399,0.184],[0.427,0.191],[0.456,0.216],[0.441,0.231],[0.426,0.231],[0.413,0.216],[0.401,0.192],[0.388,0.168],[0.375,0.149],[0.363,0.141],[0.35,0.146],[0.336,0.164],[0.32,0.187],[0.305,0.207],[0.294,0.217],[0.281,0.216],[0.251,0.244],[0.26,0.269],[0.271,0.294],[0.282,0.317],[0.294,0.329],[0.308,0.328],[0.325,0.316],[0.343,0.295],[0.362,0.276],[0.379,0.266],[0.395,0.263],[0.409,0.275],[0.42,0.299],[0.431,0.324],[0.443,0.344],[0.455,0.353],[0.466,0.349],[0.478,0.332],[0.491,0.309],[0.506,0.285],[0.524,0.268],[0.541,0.263],[0.57,0.236],[0.556,0.219],[0.544,0.193],[0.531,0.169],[0.52,0.152],[0.509,0.147],[0.497,0.154],[0.482,0.173],[0.458,0.169],[0.431,0.16],[0.402,0.141],[0.414,0.145],[0.426,0.163],[0.438,0.187],[0.452,0.212],[0.468,0.227],[0.482,0.23],[0.493,0.224],[0.507,0.206],[0.522,0.182],[0.537,0.163],[0.548,0.151],[0.561,0.15],[0.584,0.126],[0.572,0.104],[0.56,0.079],[0.548,0.055],[0.534,0.04],[0.515,0.038],[0.488,0.04],[0.462,0.019],[0.429,0.021],[0.436,0.035],[0.446,0.058],[0.458,0.083],[0.474,0.102],[0.49,0.11],[0.504,0.105],[0.52,0.086],[0.537,0.064],[0.555,0.049],[0.57,0.045],[0.583,0.054],[0.594,0.073],[0.608,0.098],[0.624,0.118],[0.641,0.13],[0.657,0.129],[0.67,0.112],[0.682,0.089],[0.691,0.063],[0.702,0.042],[0.715,0.032],[0.729,0.037],[0.744,0.054],[0.759,0.077],[0.774,0.098],[0.787,0.113],[0.825,0.119],[0.835,0.132],[0.813,0.167],[0.793,0.132],[0.809,0.12],[0.821,0.095],[0.837,0.072],[0.86,0.066],[0.882,0.073],[0.901,0.095],[0.916,0.118],[0.922,0.137],[0.922,0.128],[0.926,0.145],[0.912,0.113],[0.894,0.14],[0.887,0.14],[0.885,0.149],[0.883,0.146],[0.863,0.136],[0.884,0.168],[0.888,0.123],[0.87,0.1],[0.844,0.084],[0.812,0.096],[0.834,0.068],[0.831,0.061],[0.859,0.052],[0.831,0.051],[0.843,0.037],[0.804,0.062],[0.799,0.065],[0.79,0.077],[0.775,0.101],[0.761,0.117],[0.75,0.118],[0.736,0.108],[0.721,0.087],[0.706,0.064],[0.69,0.047],[0.675,0.04],[0.662,0.044],[0.654,0.062],[0.643,0.086],[0.632,0.11],[0.62,0.128],[0.606,0.137],[0.57,0.166],[0.579,0.191],[0.59,0.218],[0.605,0.238],[0.624,0.247],[0.643,0.242],[0.665,0.228],[0.683,0.208],[0.696,0.188],[0.704,0.175],[0.71,0.174],[0.712,0.186],[0.716,0.207],[0.726,0.234],[0.733,0.245],[0.76,0.25],[0.784,0.262],[0.804,0.256],[0.826,0.243],[0.804,0.227],[0.778,0.227],[0.746,0.239],[0.764,0.258],[0.785,0.271],[0.81,0.27],[0.834,0.253],[0.86,0.236],[0.846,0.214],[0.857,0.192],[0.856,0.168],[0.866,0.176],[0.88,0.188],[0.9,0.203],[0.923,0.217],[0.946,0.227],[0.967,0.226],[0.98,0.203],[1.0,0.189],[0.979,0.166],[0.975,0.173],[0.959,0.194],[0.946,0.217],[0.934,0.236],[0.917,0.245],[0.895,0.241],[0.87,0.227],[0.846,0.224],[0.848,0.191],[0.834,0.184],[0.812,0.194],[0.818,0.2],[0.819,0.222],[0.796,0.233],[0.776,0.253],[0.755,0.264],[0.734,0.257],[0.712,0.256],[0.694,0.239],[0.683,0.213],[0.674,0.189],[0.669,0.173],[0.665,0.167],[0.657,0.175],[0.646,0.194],[0.629,0.215],[0.611,0.234],[0.588,0.243],[0.561,0.275],[0.574,0.3],[0.585,0.325],[0.596,0.344],[0.606,0.351],[0.618,0.346],[0.634,0.329],[0.653,0.308],[0.673,0.292],[0.69,0.283],[0.71,0.268],[0.697,0.298],[0.675,0.279],[0.655,0.288],[0.649,0.264],[0.628,0.276],[0.61,0.294],[0.594,0.317],[0.579,0.337],[0.567,0.347],[0.557,0.344],[0.549,0.329],[0.538,0.305],[0.524,0.282],[0.505,0.267],[0.487,0.266],[0.47,0.278],[0.455,0.3],[0.44,0.326],[0.426,0.344],[0.414,0.35],[0.403,0.344],[0.392,0.326],[0.381,0.302],[0.37,0.277],[0.358,0.26],[0.34,0.26],[0.326,0.261],[0.308,0.277],[0.29,0.298],[0.271,0.313],[0.256,0.32],[0.244,0.315],[0.235,0.297],[0.225,0.271],[0.212,0.246],[0.195,0.23],[0.18,0.225],[0.167,0.233],[0.152,0.251],[0.134,0.273],[0.118,0.291],[0.105,0.3],[0.095,0.29],[0.083,0.294],[0.087,0.262],[0.108,0.271],[0.123,0.279],[0.135,0.298],[0.145,0.308],[0.159,0.303],[0.174,0.285],[0.188,0.261],[0.203,0.239],[0.219,0.227],[0.236,0.228],[0.273,0.202],[0.268,0.177],[0.258,0.15],[0.242,0.129],[0.222,0.115],[0.199,0.116],[0.177,0.129],[0.159,0.15],[0.148,0.172],[0.143,0.187],[0.142,0.187],[0.141,0.178],[0.137,0.157],[0.128,0.131],[0.113,0.109],[0.092,0.096],[0.069,0.097],[0.047,0.11],[0.027,0.131],[0.01,0.15],[0.001,0.158],[0.0,0.153],[0.001,0.134]]},"method":"EM","resolution":4.43,"rna_type":"Fluorescing aptamer","rna_group":"Aptamer","num_chains":1,"total_rna_len":374,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["junction","internal loop","bulge","stem"],"rmsd":1.67,"host_chain_rmsd":1.67,"pocket_rmsd":3.05,"lig_bsa":446.9,"ligand_burial":0.793,"tm_score":0.97,"rg_apo":53.26,"rg_holo":53.14,"rg_delta":-0.12,"bp_rewire_src":"dssr","bp_formed":7,"bp_broken":4,"bp_conserved":181,"bp_formed_wc":2,"bp_broken_wc":1,"bp_conserved_wc":151,"maxd":5.2,"water":0,"hbonds":2,"mw":365.5,"logp":4.33,"thumb_img":true,"thumb_v":1785389625,"apo_alts":[],"n_apo_copies":0},{"id":"8CF2_ULR_A_C_101_pocket","title":"8CF2 (ULR) vs 6HMI (apo)","struct_title":"Solution structure of the RNA helix formed by the 5'-end of U1 snRNA and an A-1 bulged 5'-splice site in complex with SMN-CY","holo_pdb":"8CF2","ligand":"ULR","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"B","lig_resseq":"101","apo_pdb":"6HMI","apo_chain":"A","holo_len":11,"apo_len":11,"pocket_size":11,"thumb":{"holo":[[0.928,0.038],[0.941,0.15],[0.934,0.264],[0.814,0.386],[0.701,0.505],[0.569,0.58],[0.424,0.541],[0.303,0.41],[0.202,0.234],[0.102,0.122],[0.0,0.066]],"apo":[[1.0,0.0],[0.98,0.123],[0.917,0.251],[0.813,0.398],[0.679,0.515],[0.533,0.563],[0.389,0.529],[0.269,0.416],[0.186,0.26],[0.131,0.152],[0.021,0.088]]},"method":"NMR","resolution":null,"rna_type":"Double helix","rna_group":"Structural","num_chains":2,"total_rna_len":20,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["internal loop","bulge","stem"],"rmsd":3.52,"host_chain_rmsd":1.53,"pocket_rmsd":2.12,"lig_bsa":224.2,"ligand_burial":0.398,"tm_score":0.158,"rg_apo":12.65,"rg_holo":12.44,"rg_delta":-0.21,"bp_rewire_src":"dssr","bp_formed":3,"bp_broken":3,"bp_conserved":7,"bp_formed_wc":0,"bp_broken_wc":1,"bp_conserved_wc":5,"maxd":10.7,"water":0,"hbonds":1,"mw":382.4,"logp":2.62,"thumb_img":true,"thumb_v":1785488734,"apo_alts":[{"pdb":"5OR0","rmsd":4.73,"host_chain_rmsd":4.73,"apo_chain":"A","apo_len":11,"identity":100,"global_identity":100,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.317,"rg_delta":-2.06,"pocket_rmsd":3.17,"maxd":15.1,"bp_formed":3,"bp_broken":2,"bp_conserved":7}],"n_apo_copies":0},{"id":"8D28_TEP_A_J_101_pocket","title":"8D28 (TEP) vs 9JA9 (apo)","struct_title":"Crystal structure of theophylline aptamer in complex with theophylline","holo_pdb":"8D28","ligand":"TEP","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"101","apo_pdb":"9JA9","apo_chain":"A","holo_len":33,"apo_len":33,"pocket_size":12,"thumb":{"holo":[[0.053,0.25],[0.094,0.368],[0.152,0.445],[0.222,0.464],[0.299,0.465],[0.368,0.391],[0.509,0.338],[0.492,0.229],[0.542,0.139],[0.591,0.12],[0.635,0.161],[0.695,0.243],[0.779,0.332],[0.863,0.355],[1.0,0.332],[0.932,0.368],[0.855,0.44],[0.773,0.44],[0.71,0.438],[0.632,0.383],[0.536,0.32],[0.387,0.338],[0.313,0.237],[0.365,0.176],[0.491,0.119],[0.428,0.074],[0.271,0.0],[0.315,0.149],[0.25,0.215],[0.199,0.317],[0.138,0.421],[0.064,0.463],[0.0,0.438]],"apo":[[0.043,0.282],[0.104,0.388],[0.187,0.453],[0.258,0.459],[0.319,0.443],[0.361,0.37],[0.419,0.259],[0.479,0.172],[0.534,0.093],[0.585,0.09],[0.631,0.158],[0.682,0.251],[0.759,0.345],[0.852,0.382],[0.997,0.382],[0.94,0.416],[0.863,0.483],[0.778,0.455],[0.697,0.441],[0.623,0.38],[0.544,0.3],[0.395,0.276],[0.306,0.192],[0.322,0.144],[0.483,0.097],[0.436,0.058],[0.361,0.094],[0.282,0.136],[0.236,0.222],[0.199,0.337],[0.159,0.447],[0.098,0.497],[0.023,0.47]]},"method":"X-ray","resolution":1.42,"rna_type":"Aptamer","rna_group":"Aptamer","num_chains":1,"total_rna_len":66,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["internal loop","stem"],"rmsd":2.87,"host_chain_rmsd":2.87,"pocket_rmsd":3.77,"lig_bsa":264.1,"ligand_burial":0.869,"tm_score":0.297,"rg_apo":14.94,"rg_holo":14.81,"rg_delta":-0.13,"bp_rewire_src":"dssr","bp_formed":1,"bp_broken":3,"bp_conserved":15,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":9,"maxd":81.1,"water":0,"hbonds":2,"mw":180.2,"logp":-1.04,"thumb_img":true,"thumb_v":1785389625,"apo_alts":[{"pdb":"9JA7","rmsd":2.86,"host_chain_rmsd":2.86,"apo_chain":"A","apo_len":33,"identity":100,"global_identity":100,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.293,"rg_delta":-0.14,"pocket_rmsd":3.76,"maxd":8.5,"bp_formed":1,"bp_broken":3,"bp_conserved":15}],"n_apo_copies":0},{"id":"8D28_TEP_B_C_101_pocket","title":"8D28 (TEP) vs 9JA9 (apo)","struct_title":"Crystal structure of theophylline aptamer in complex with theophylline","holo_pdb":"8D28","ligand":"TEP","holo_chain":"B","holo_rna_chain":"B","lig_auth_chain":"B","nearest_rna_chain":"B","lig_resseq":"101","apo_pdb":"9JA9","apo_chain":"A","holo_len":33,"apo_len":33,"pocket_size":13,"thumb":{"holo":[[0.054,0.235],[0.088,0.354],[0.151,0.437],[0.227,0.453],[0.305,0.453],[0.371,0.377],[0.512,0.325],[0.49,0.214],[0.547,0.126],[0.594,0.108],[0.637,0.148],[0.698,0.229],[0.784,0.315],[0.866,0.337],[1.0,0.313],[0.931,0.354],[0.855,0.428],[0.777,0.431],[0.715,0.429],[0.636,0.37],[0.542,0.305],[0.393,0.325],[0.318,0.226],[0.369,0.163],[0.495,0.106],[0.425,0.06],[0.25,0.0],[0.319,0.135],[0.26,0.202],[0.213,0.306],[0.148,0.408],[0.069,0.444],[0.0,0.418]],"apo":[[0.048,0.27],[0.109,0.375],[0.191,0.439],[0.262,0.445],[0.323,0.43],[0.364,0.357],[0.422,0.247],[0.481,0.16],[0.536,0.082],[0.586,0.078],[0.632,0.145],[0.683,0.237],[0.76,0.33],[0.852,0.367],[0.996,0.367],[0.94,0.401],[0.864,0.468],[0.779,0.441],[0.698,0.426],[0.625,0.366],[0.546,0.286],[0.398,0.263],[0.309,0.18],[0.324,0.131],[0.485,0.084],[0.438,0.046],[0.363,0.083],[0.286,0.124],[0.239,0.21],[0.203,0.324],[0.163,0.434],[0.103,0.483],[0.028,0.457]]},"method":"X-ray","resolution":1.42,"rna_type":"Aptamer","rna_group":"Aptamer","num_chains":1,"total_rna_len":66,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["internal loop","stem"],"rmsd":3.0,"host_chain_rmsd":3.0,"pocket_rmsd":3.66,"lig_bsa":275.8,"ligand_burial":0.874,"tm_score":0.302,"rg_apo":14.94,"rg_holo":14.87,"rg_delta":-0.07,"bp_rewire_src":"dssr","bp_formed":1,"bp_broken":3,"bp_conserved":15,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":9,"maxd":81.2,"water":0,"hbonds":2,"mw":180.2,"logp":-1.04,"thumb_img":true,"thumb_v":1785389625,"apo_alts":[{"pdb":"9JA7","rmsd":2.98,"host_chain_rmsd":2.98,"apo_chain":"A","apo_len":33,"identity":100,"global_identity":100,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.299,"rg_delta":-0.08,"pocket_rmsd":3.64,"maxd":8.5,"bp_formed":1,"bp_broken":3,"bp_conserved":15}],"n_apo_copies":0},{"id":"8D2A_QB3_A_C_101_pocket","title":"8D2A (QB3) vs 9JA9 (apo)","struct_title":"Crystal structure of theophylline aptamer in complex with TAL3","holo_pdb":"8D2A","ligand":"QB3","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"101","apo_pdb":"9JA9","apo_chain":"A","holo_len":33,"apo_len":33,"pocket_size":14,"thumb":{"holo":[[0.946,0.227],[0.912,0.344],[0.851,0.431],[0.774,0.453],[0.696,0.456],[0.629,0.382],[0.488,0.327],[0.497,0.215],[0.442,0.13],[0.398,0.11],[0.359,0.149],[0.304,0.228],[0.214,0.317],[0.134,0.342],[0.0,0.312],[0.063,0.352],[0.14,0.42],[0.221,0.422],[0.285,0.424],[0.363,0.365],[0.457,0.302],[0.605,0.321],[0.681,0.225],[0.628,0.162],[0.502,0.103],[0.567,0.063],[0.74,0.0],[0.674,0.14],[0.732,0.208],[0.78,0.309],[0.848,0.41],[0.928,0.44],[1.0,0.41]],"apo":[[0.947,0.265],[0.887,0.37],[0.805,0.435],[0.735,0.442],[0.674,0.428],[0.632,0.356],[0.574,0.248],[0.515,0.161],[0.46,0.083],[0.41,0.078],[0.366,0.144],[0.316,0.235],[0.239,0.328],[0.147,0.366],[0.004,0.367],[0.06,0.402],[0.136,0.469],[0.22,0.441],[0.3,0.425],[0.374,0.364],[0.451,0.285],[0.598,0.262],[0.686,0.178],[0.672,0.128],[0.512,0.083],[0.557,0.046],[0.632,0.083],[0.709,0.125],[0.755,0.211],[0.792,0.324],[0.832,0.432],[0.892,0.48],[0.967,0.452]]},"method":"X-ray","resolution":2.17,"rna_type":"Aptamer","rna_group":"Aptamer","num_chains":1,"total_rna_len":66,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["internal loop","stem"],"rmsd":3.02,"host_chain_rmsd":3.02,"pocket_rmsd":4.01,"lig_bsa":279.5,"ligand_burial":0.56,"tm_score":0.303,"rg_apo":14.94,"rg_holo":14.92,"rg_delta":-0.02,"bp_rewire_src":"dssr","bp_formed":1,"bp_broken":3,"bp_conserved":15,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":9,"maxd":81.2,"water":1,"hbonds":4,"mw":303.4,"logp":2.06,"thumb_img":true,"thumb_v":1785389625,"apo_alts":[{"pdb":"9JA7","rmsd":3.0,"host_chain_rmsd":3.0,"apo_chain":"A","apo_len":33,"identity":100,"global_identity":100,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.304,"rg_delta":-0.03,"pocket_rmsd":4.0,"maxd":8.4,"bp_formed":1,"bp_broken":3,"bp_conserved":15}],"n_apo_copies":0},{"id":"8D2A_QB3_B_G_101_pocket","title":"8D2A (QB3) vs 9JA9 (apo)","struct_title":"Crystal structure of theophylline aptamer in complex with TAL3","holo_pdb":"8D2A","ligand":"QB3","holo_chain":"B","holo_rna_chain":"B","lig_auth_chain":"B","nearest_rna_chain":"B","lig_resseq":"101","apo_pdb":"9JA9","apo_chain":"A","holo_len":33,"apo_len":33,"pocket_size":14,"thumb":{"holo":[[0.053,0.245],[0.094,0.367],[0.152,0.442],[0.224,0.462],[0.301,0.462],[0.368,0.389],[0.511,0.334],[0.508,0.221],[0.567,0.143],[0.598,0.116],[0.633,0.168],[0.692,0.249],[0.781,0.341],[0.864,0.356],[1.0,0.33],[0.936,0.365],[0.861,0.428],[0.775,0.43],[0.715,0.436],[0.633,0.388],[0.541,0.319],[0.391,0.332],[0.316,0.237],[0.371,0.175],[0.494,0.119],[0.434,0.074],[0.278,0.0],[0.32,0.148],[0.258,0.215],[0.205,0.315],[0.143,0.419],[0.067,0.46],[0.0,0.438]],"apo":[[0.05,0.281],[0.11,0.387],[0.192,0.45],[0.263,0.456],[0.324,0.439],[0.366,0.366],[0.424,0.256],[0.484,0.169],[0.539,0.093],[0.589,0.091],[0.634,0.159],[0.684,0.252],[0.76,0.346],[0.852,0.382],[0.996,0.382],[0.939,0.414],[0.863,0.481],[0.779,0.453],[0.698,0.44],[0.625,0.38],[0.547,0.3],[0.4,0.275],[0.312,0.191],[0.327,0.146],[0.487,0.099],[0.441,0.058],[0.366,0.093],[0.289,0.133],[0.242,0.218],[0.205,0.332],[0.165,0.442],[0.104,0.492],[0.03,0.466]]},"method":"X-ray","resolution":2.17,"rna_type":"Aptamer","rna_group":"Aptamer","num_chains":1,"total_rna_len":66,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["internal loop","stem"],"rmsd":2.89,"host_chain_rmsd":2.89,"pocket_rmsd":3.93,"lig_bsa":285.9,"ligand_burial":0.594,"tm_score":0.319,"rg_apo":14.94,"rg_holo":14.91,"rg_delta":-0.03,"bp_rewire_src":"dssr","bp_formed":1,"bp_broken":3,"bp_conserved":15,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":9,"maxd":81.0,"water":1,"hbonds":3,"mw":303.4,"logp":2.06,"thumb_img":true,"thumb_v":1785389626,"apo_alts":[{"pdb":"9JA7","rmsd":2.87,"host_chain_rmsd":2.87,"apo_chain":"A","apo_len":33,"identity":100,"global_identity":100,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.319,"rg_delta":-0.04,"pocket_rmsd":3.92,"maxd":8.4,"bp_formed":1,"bp_broken":3,"bp_conserved":15}],"n_apo_copies":0},{"id":"8D2B_QAX_A_C_101_pocket","title":"8D2B (QAX) vs 9JA9 (apo)","struct_title":"Crystal structure of theophylline aptamer in complex with TAL2","holo_pdb":"8D2B","ligand":"QAX","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"101","apo_pdb":"9JA9","apo_chain":"A","holo_len":33,"apo_len":33,"pocket_size":13,"thumb":{"holo":[[0.05,0.228],[0.084,0.35],[0.147,0.431],[0.221,0.454],[0.299,0.459],[0.367,0.39],[0.508,0.331],[0.504,0.222],[0.559,0.14],[0.596,0.114],[0.634,0.156],[0.693,0.237],[0.778,0.325],[0.863,0.348],[1.0,0.321],[0.934,0.356],[0.858,0.423],[0.772,0.426],[0.711,0.428],[0.632,0.376],[0.542,0.311],[0.391,0.326],[0.317,0.229],[0.369,0.169],[0.494,0.111],[0.432,0.07],[0.267,0.0],[0.324,0.148],[0.263,0.217],[0.209,0.317],[0.144,0.418],[0.066,0.453],[0.0,0.418]],"apo":[[0.05,0.27],[0.11,0.375],[0.191,0.44],[0.262,0.447],[0.323,0.434],[0.365,0.362],[0.423,0.255],[0.482,0.168],[0.537,0.09],[0.586,0.085],[0.631,0.151],[0.68,0.242],[0.756,0.335],[0.848,0.373],[0.991,0.374],[0.935,0.409],[0.86,0.476],[0.776,0.447],[0.695,0.432],[0.622,0.37],[0.545,0.291],[0.398,0.268],[0.311,0.184],[0.325,0.134],[0.485,0.09],[0.44,0.053],[0.365,0.09],[0.288,0.132],[0.242,0.217],[0.205,0.33],[0.165,0.438],[0.105,0.485],[0.03,0.457]]},"method":"X-ray","resolution":1.44,"rna_type":"Aptamer","rna_group":"Aptamer","num_chains":1,"total_rna_len":66,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["internal loop","stem"],"rmsd":3.01,"host_chain_rmsd":3.01,"pocket_rmsd":3.69,"lig_bsa":292.3,"ligand_burial":0.603,"tm_score":0.305,"rg_apo":14.94,"rg_holo":14.94,"rg_delta":0.0,"bp_rewire_src":"dssr","bp_formed":1,"bp_broken":3,"bp_conserved":15,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":9,"maxd":81.0,"water":1,"hbonds":3,"mw":317.4,"logp":2.6,"thumb_img":true,"thumb_v":1785389626,"apo_alts":[{"pdb":"9JA7","rmsd":2.99,"host_chain_rmsd":2.99,"apo_chain":"A","apo_len":33,"identity":100,"global_identity":100,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.312,"rg_delta":-0.01,"pocket_rmsd":3.68,"maxd":8.3,"bp_formed":1,"bp_broken":3,"bp_conserved":15}],"n_apo_copies":0},{"id":"8D2B_QAX_B_H_101_pocket","title":"8D2B (QAX) vs 9JA9 (apo)","struct_title":"Crystal structure of theophylline aptamer in complex with TAL2","holo_pdb":"8D2B","ligand":"QAX","holo_chain":"B","holo_rna_chain":"B","lig_auth_chain":"B","nearest_rna_chain":"B","lig_resseq":"101","apo_pdb":"9JA9","apo_chain":"A","holo_len":33,"apo_len":33,"pocket_size":13,"thumb":{"holo":[[0.945,0.228],[0.912,0.349],[0.849,0.433],[0.773,0.45],[0.696,0.451],[0.632,0.378],[0.49,0.322],[0.505,0.209],[0.448,0.124],[0.403,0.105],[0.362,0.146],[0.305,0.225],[0.22,0.315],[0.137,0.339],[0.0,0.311],[0.067,0.353],[0.145,0.42],[0.226,0.424],[0.288,0.426],[0.365,0.367],[0.459,0.3],[0.608,0.32],[0.681,0.223],[0.629,0.161],[0.503,0.103],[0.573,0.059],[0.747,0.0],[0.678,0.135],[0.737,0.202],[0.784,0.305],[0.851,0.407],[0.931,0.441],[1.0,0.411]],"apo":[[0.949,0.265],[0.889,0.37],[0.808,0.434],[0.737,0.441],[0.676,0.426],[0.635,0.354],[0.577,0.245],[0.518,0.158],[0.463,0.081],[0.413,0.077],[0.369,0.143],[0.318,0.234],[0.242,0.327],[0.15,0.364],[0.007,0.365],[0.063,0.399],[0.139,0.465],[0.223,0.438],[0.303,0.423],[0.376,0.363],[0.454,0.284],[0.601,0.26],[0.689,0.177],[0.674,0.129],[0.515,0.083],[0.561,0.045],[0.635,0.081],[0.712,0.123],[0.758,0.208],[0.795,0.321],[0.835,0.43],[0.895,0.479],[0.969,0.452]]},"method":"X-ray","resolution":1.44,"rna_type":"Aptamer","rna_group":"Aptamer","num_chains":1,"total_rna_len":66,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["internal loop","stem"],"rmsd":2.99,"host_chain_rmsd":2.99,"pocket_rmsd":3.64,"lig_bsa":298.0,"ligand_burial":0.563,"tm_score":0.304,"rg_apo":14.94,"rg_holo":14.91,"rg_delta":-0.03,"bp_rewire_src":"dssr","bp_formed":1,"bp_broken":3,"bp_conserved":15,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":9,"maxd":81.2,"water":1,"hbonds":3,"mw":317.4,"logp":2.6,"thumb_img":true,"thumb_v":1785389625,"apo_alts":[{"pdb":"9JA7","rmsd":2.97,"host_chain_rmsd":2.97,"apo_chain":"A","apo_len":33,"identity":100,"global_identity":100,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.305,"rg_delta":-0.04,"pocket_rmsd":3.63,"maxd":8.3,"bp_formed":1,"bp_broken":3,"bp_conserved":15}],"n_apo_copies":0},{"id":"8D5L_QIJ_A_E_101_pocket","title":"8D5L (QIJ) vs 9JA9 (apo)","struct_title":"Crystal structure of theophylline aptamer in complex with TAL1","holo_pdb":"8D5L","ligand":"QIJ","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"101","apo_pdb":"9JA9","apo_chain":"A","holo_len":33,"apo_len":33,"pocket_size":14,"thumb":{"holo":[[0.998,0.229],[0.934,0.132],[0.862,0.052],[0.783,0.038],[0.708,0.034],[0.64,0.109],[0.494,0.156],[0.503,0.265],[0.449,0.359],[0.403,0.381],[0.358,0.341],[0.299,0.26],[0.215,0.163],[0.137,0.137],[0.0,0.159],[0.069,0.115],[0.148,0.033],[0.227,0.05],[0.291,0.062],[0.367,0.122],[0.462,0.186],[0.614,0.166],[0.688,0.264],[0.636,0.33],[0.509,0.386],[0.549,0.428],[0.729,0.489],[0.68,0.353],[0.74,0.286],[0.789,0.18],[0.848,0.079],[0.921,0.023],[1.0,0.035]],"apo":[[0.961,0.217],[0.9,0.11],[0.817,0.044],[0.745,0.038],[0.682,0.052],[0.639,0.126],[0.58,0.237],[0.519,0.324],[0.463,0.403],[0.413,0.407],[0.368,0.339],[0.318,0.245],[0.24,0.15],[0.147,0.112],[0.001,0.111],[0.057,0.077],[0.135,0.009],[0.22,0.037],[0.302,0.053],[0.377,0.115],[0.456,0.196],[0.605,0.221],[0.695,0.306],[0.68,0.355],[0.517,0.401],[0.563,0.44],[0.638,0.404],[0.717,0.362],[0.764,0.275],[0.802,0.16],[0.843,0.049],[0.905,0.0],[0.981,0.028]]},"method":"X-ray","resolution":1.64,"rna_type":"Aptamer","rna_group":"Aptamer","num_chains":1,"total_rna_len":132,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["internal loop","stem"],"rmsd":2.88,"host_chain_rmsd":2.88,"pocket_rmsd":3.93,"lig_bsa":289.6,"ligand_burial":0.849,"tm_score":0.306,"rg_apo":14.94,"rg_holo":14.88,"rg_delta":-0.06,"bp_rewire_src":"dssr","bp_formed":1,"bp_broken":3,"bp_conserved":15,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":9,"maxd":65.6,"water":2,"hbonds":4,"mw":193.2,"logp":-1.4,"thumb_img":true,"thumb_v":1785389626,"apo_alts":[{"pdb":"9JA7","rmsd":2.86,"host_chain_rmsd":2.86,"apo_chain":"A","apo_len":33,"identity":100,"global_identity":100,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.298,"rg_delta":-0.07,"pocket_rmsd":3.92,"maxd":9.0,"bp_formed":1,"bp_broken":3,"bp_conserved":15}],"n_apo_copies":0},{"id":"8D5L_QIJ_B_J_101_pocket","title":"8D5L (QIJ) vs 9JA9 (apo)","struct_title":"Crystal structure of theophylline aptamer in complex with TAL1","holo_pdb":"8D5L","ligand":"QIJ","holo_chain":"B","holo_rna_chain":"B","lig_auth_chain":"B","nearest_rna_chain":"B","lig_resseq":"101","apo_pdb":"9JA9","apo_chain":"A","holo_len":33,"apo_len":33,"pocket_size":14,"thumb":{"holo":[[0.033,0.23],[0.087,0.12],[0.163,0.044],[0.234,0.019],[0.306,0.036],[0.372,0.11],[0.513,0.161],[0.5,0.274],[0.559,0.354],[0.601,0.375],[0.643,0.332],[0.705,0.251],[0.782,0.158],[0.861,0.127],[1.0,0.139],[0.925,0.11],[0.846,0.043],[0.767,0.057],[0.71,0.059],[0.636,0.109],[0.543,0.176],[0.394,0.157],[0.319,0.258],[0.373,0.32],[0.499,0.373],[0.436,0.421],[0.318,0.487],[0.325,0.349],[0.27,0.278],[0.224,0.165],[0.155,0.064],[0.078,0.027],[0.0,0.046]],"apo":[[0.054,0.21],[0.113,0.104],[0.194,0.04],[0.265,0.035],[0.326,0.052],[0.369,0.125],[0.427,0.235],[0.487,0.32],[0.543,0.396],[0.592,0.397],[0.637,0.328],[0.686,0.235],[0.761,0.142],[0.853,0.105],[0.996,0.104],[0.94,0.073],[0.864,0.008],[0.78,0.035],[0.7,0.049],[0.627,0.108],[0.55,0.189],[0.403,0.214],[0.315,0.299],[0.33,0.343],[0.491,0.39],[0.445,0.43],[0.371,0.396],[0.293,0.357],[0.246,0.273],[0.209,0.16],[0.168,0.05],[0.107,0.0],[0.033,0.026]]},"method":"X-ray","resolution":1.64,"rna_type":"Aptamer","rna_group":"Aptamer","num_chains":1,"total_rna_len":132,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["internal loop","stem"],"rmsd":2.69,"host_chain_rmsd":2.69,"pocket_rmsd":3.64,"lig_bsa":300.1,"ligand_burial":0.853,"tm_score":0.323,"rg_apo":14.94,"rg_holo":14.87,"rg_delta":-0.07,"bp_rewire_src":"dssr","bp_formed":1,"bp_broken":3,"bp_conserved":15,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":9,"maxd":39.8,"water":1,"hbonds":3,"mw":193.2,"logp":-1.4,"thumb_img":true,"thumb_v":1785389625,"apo_alts":[{"pdb":"9JA7","rmsd":2.67,"host_chain_rmsd":2.67,"apo_chain":"A","apo_len":33,"identity":100,"global_identity":100,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.32,"rg_delta":-0.08,"pocket_rmsd":3.62,"maxd":8.6,"bp_formed":1,"bp_broken":3,"bp_conserved":15}],"n_apo_copies":0},{"id":"8D5L_QIJ_C_O_101_pocket","title":"8D5L (QIJ) vs 9JA9 (apo)","struct_title":"Crystal structure of theophylline aptamer in complex with TAL1","holo_pdb":"8D5L","ligand":"QIJ","holo_chain":"C","holo_rna_chain":"C","lig_auth_chain":"C","nearest_rna_chain":"C","lig_resseq":"101","apo_pdb":"9JA9","apo_chain":"A","holo_len":33,"apo_len":33,"pocket_size":14,"thumb":{"holo":[[0.0,0.248],[0.066,0.344],[0.141,0.425],[0.222,0.442],[0.302,0.451],[0.37,0.379],[0.511,0.326],[0.507,0.225],[0.557,0.129],[0.599,0.099],[0.644,0.133],[0.71,0.215],[0.788,0.307],[0.864,0.345],[1.0,0.34],[0.928,0.384],[0.845,0.454],[0.769,0.43],[0.71,0.413],[0.635,0.356],[0.54,0.288],[0.389,0.312],[0.314,0.215],[0.366,0.148],[0.49,0.09],[0.453,0.056],[0.275,0.0],[0.328,0.137],[0.272,0.209],[0.225,0.315],[0.166,0.412],[0.089,0.464],[0.007,0.45]],"apo":[[0.046,0.26],[0.106,0.367],[0.189,0.434],[0.261,0.443],[0.323,0.432],[0.366,0.361],[0.425,0.253],[0.485,0.165],[0.541,0.085],[0.59,0.078],[0.635,0.143],[0.684,0.234],[0.761,0.329],[0.854,0.368],[0.999,0.371],[0.943,0.407],[0.867,0.476],[0.782,0.446],[0.7,0.429],[0.625,0.365],[0.547,0.284],[0.399,0.262],[0.31,0.177],[0.325,0.123],[0.487,0.08],[0.442,0.045],[0.367,0.084],[0.289,0.127],[0.242,0.214],[0.204,0.327],[0.163,0.436],[0.101,0.482],[0.026,0.452]]},"method":"X-ray","resolution":1.64,"rna_type":"Aptamer","rna_group":"Aptamer","num_chains":1,"total_rna_len":132,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["internal loop","stem"],"rmsd":3.02,"host_chain_rmsd":3.02,"pocket_rmsd":4.01,"lig_bsa":275.6,"ligand_burial":0.842,"tm_score":0.314,"rg_apo":14.94,"rg_holo":14.88,"rg_delta":-0.06,"bp_rewire_src":"dssr","bp_formed":1,"bp_broken":3,"bp_conserved":15,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":9,"maxd":9.0,"water":2,"hbonds":4,"mw":193.2,"logp":-1.4,"thumb_img":true,"thumb_v":1785389625,"apo_alts":[{"pdb":"9JA7","rmsd":2.99,"host_chain_rmsd":2.99,"apo_chain":"A","apo_len":33,"identity":100,"global_identity":100,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.267,"rg_delta":-0.07,"pocket_rmsd":3.99,"maxd":9.0,"bp_formed":1,"bp_broken":3,"bp_conserved":15}],"n_apo_copies":0},{"id":"8D5L_QIJ_D_T_101_pocket","title":"8D5L (QIJ) vs 9JA9 (apo)","struct_title":"Crystal structure of theophylline aptamer in complex with TAL1","holo_pdb":"8D5L","ligand":"QIJ","holo_chain":"D","holo_rna_chain":"D","lig_auth_chain":"D","nearest_rna_chain":"D","lig_resseq":"101","apo_pdb":"9JA9","apo_chain":"A","holo_len":33,"apo_len":33,"pocket_size":14,"thumb":{"holo":[[0.035,0.254],[0.087,0.365],[0.162,0.442],[0.234,0.468],[0.306,0.453],[0.373,0.378],[0.514,0.329],[0.503,0.216],[0.562,0.136],[0.6,0.114],[0.644,0.159],[0.704,0.241],[0.784,0.334],[0.863,0.358],[1.0,0.342],[0.929,0.369],[0.85,0.437],[0.771,0.438],[0.71,0.431],[0.636,0.38],[0.545,0.313],[0.394,0.33],[0.319,0.229],[0.374,0.168],[0.5,0.115],[0.44,0.068],[0.324,0.0],[0.327,0.139],[0.27,0.208],[0.225,0.323],[0.156,0.422],[0.077,0.459],[0.0,0.438]],"apo":[[0.055,0.278],[0.114,0.383],[0.195,0.447],[0.266,0.452],[0.327,0.436],[0.37,0.362],[0.429,0.252],[0.489,0.167],[0.544,0.091],[0.594,0.09],[0.638,0.159],[0.687,0.252],[0.763,0.346],[0.854,0.383],[0.998,0.384],[0.942,0.415],[0.865,0.48],[0.782,0.453],[0.701,0.439],[0.628,0.379],[0.551,0.299],[0.404,0.273],[0.317,0.189],[0.332,0.144],[0.492,0.098],[0.447,0.057],[0.372,0.091],[0.295,0.13],[0.248,0.214],[0.21,0.327],[0.169,0.437],[0.108,0.487],[0.034,0.462]]},"method":"X-ray","resolution":1.64,"rna_type":"Aptamer","rna_group":"Aptamer","num_chains":1,"total_rna_len":132,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["internal loop","stem"],"rmsd":2.72,"host_chain_rmsd":2.72,"pocket_rmsd":3.65,"lig_bsa":284.4,"ligand_burial":0.842,"tm_score":0.327,"rg_apo":14.94,"rg_holo":14.86,"rg_delta":-0.08,"bp_rewire_src":"dssr","bp_formed":1,"bp_broken":3,"bp_conserved":15,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":9,"maxd":39.9,"water":1,"hbonds":3,"mw":193.2,"logp":-1.4,"thumb_img":true,"thumb_v":1785389626,"apo_alts":[{"pdb":"9JA7","rmsd":2.69,"host_chain_rmsd":2.69,"apo_chain":"A","apo_len":33,"identity":100,"global_identity":100,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.323,"rg_delta":-0.09,"pocket_rmsd":3.64,"maxd":9.0,"bp_formed":1,"bp_broken":3,"bp_conserved":15}],"n_apo_copies":0},{"id":"8D5O_QEU_A_C_101_pocket","title":"8D5O (QEU) vs 9JA9 (apo)","struct_title":"Crystal structure of theophylline aptamer in complex with TAL4","holo_pdb":"8D5O","ligand":"QEU","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"101","apo_pdb":"9JA9","apo_chain":"A","holo_len":33,"apo_len":33,"pocket_size":13,"thumb":{"holo":[[0.055,0.247],[0.095,0.361],[0.152,0.438],[0.222,0.463],[0.298,0.463],[0.369,0.388],[0.51,0.337],[0.509,0.222],[0.566,0.144],[0.6,0.124],[0.635,0.17],[0.694,0.253],[0.778,0.342],[0.863,0.354],[1.0,0.331],[0.937,0.363],[0.857,0.425],[0.773,0.433],[0.71,0.432],[0.631,0.387],[0.541,0.321],[0.39,0.332],[0.316,0.237],[0.371,0.175],[0.498,0.121],[0.436,0.079],[0.282,0.0],[0.323,0.152],[0.26,0.217],[0.204,0.318],[0.142,0.419],[0.065,0.462],[0.0,0.434]],"apo":[[0.051,0.28],[0.111,0.386],[0.192,0.449],[0.263,0.455],[0.324,0.439],[0.366,0.366],[0.424,0.257],[0.484,0.171],[0.539,0.095],[0.589,0.093],[0.633,0.161],[0.683,0.253],[0.759,0.347],[0.85,0.383],[0.994,0.384],[0.937,0.416],[0.861,0.482],[0.778,0.455],[0.697,0.441],[0.624,0.381],[0.547,0.301],[0.4,0.276],[0.312,0.192],[0.327,0.146],[0.487,0.1],[0.442,0.06],[0.367,0.095],[0.29,0.135],[0.243,0.219],[0.206,0.332],[0.165,0.442],[0.105,0.491],[0.03,0.465]]},"method":"X-ray","resolution":2.7,"rna_type":"Aptamer","rna_group":"Aptamer","num_chains":1,"total_rna_len":66,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["internal loop","stem"],"rmsd":2.93,"host_chain_rmsd":2.93,"pocket_rmsd":3.68,"lig_bsa":280.6,"ligand_burial":0.581,"tm_score":0.308,"rg_apo":14.94,"rg_holo":14.89,"rg_delta":-0.05,"bp_rewire_src":"dssr","bp_formed":1,"bp_broken":3,"bp_conserved":15,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":9,"maxd":81.2,"water":0,"hbonds":1,"mw":346.4,"logp":1.54,"thumb_img":true,"thumb_v":1785389626,"apo_alts":[{"pdb":"9JA7","rmsd":2.92,"host_chain_rmsd":2.92,"apo_chain":"A","apo_len":33,"identity":100,"global_identity":100,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.311,"rg_delta":-0.06,"pocket_rmsd":3.67,"maxd":8.3,"bp_formed":1,"bp_broken":3,"bp_conserved":15}],"n_apo_copies":0},{"id":"8D5O_QEU_B_D_101_pocket","title":"8D5O (QEU) vs 9JA9 (apo)","struct_title":"Crystal structure of theophylline aptamer in complex with TAL4","holo_pdb":"8D5O","ligand":"QEU","holo_chain":"B","holo_rna_chain":"B","lig_auth_chain":"B","nearest_rna_chain":"B","lig_resseq":"101","apo_pdb":"9JA9","apo_chain":"A","holo_len":33,"apo_len":33,"pocket_size":14,"thumb":{"holo":[[0.942,0.227],[0.909,0.344],[0.847,0.431],[0.774,0.456],[0.693,0.458],[0.627,0.381],[0.485,0.328],[0.496,0.214],[0.44,0.131],[0.398,0.109],[0.358,0.155],[0.301,0.238],[0.213,0.323],[0.131,0.337],[0.0,0.317],[0.066,0.354],[0.144,0.417],[0.224,0.426],[0.286,0.426],[0.362,0.373],[0.452,0.305],[0.602,0.321],[0.679,0.229],[0.626,0.168],[0.5,0.108],[0.566,0.067],[0.731,0.0],[0.672,0.143],[0.73,0.212],[0.781,0.313],[0.846,0.411],[0.931,0.443],[1.0,0.414]],"apo":[[0.944,0.267],[0.885,0.372],[0.804,0.437],[0.733,0.444],[0.672,0.43],[0.63,0.358],[0.573,0.25],[0.514,0.164],[0.459,0.086],[0.409,0.082],[0.364,0.148],[0.315,0.239],[0.239,0.332],[0.147,0.369],[0.005,0.371],[0.06,0.404],[0.136,0.471],[0.22,0.443],[0.3,0.428],[0.373,0.367],[0.45,0.288],[0.597,0.264],[0.684,0.181],[0.67,0.132],[0.51,0.087],[0.556,0.049],[0.63,0.086],[0.707,0.127],[0.753,0.212],[0.79,0.325],[0.83,0.433],[0.89,0.481],[0.965,0.454]]},"method":"X-ray","resolution":2.7,"rna_type":"Aptamer","rna_group":"Aptamer","num_chains":1,"total_rna_len":66,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["internal loop","stem"],"rmsd":3.02,"host_chain_rmsd":3.02,"pocket_rmsd":4.0,"lig_bsa":308.0,"ligand_burial":0.574,"tm_score":0.311,"rg_apo":14.94,"rg_holo":14.91,"rg_delta":-0.03,"bp_rewire_src":"dssr","bp_formed":1,"bp_broken":3,"bp_conserved":15,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":9,"maxd":81.3,"water":0,"hbonds":2,"mw":346.4,"logp":1.54,"thumb_img":true,"thumb_v":1785389626,"apo_alts":[{"pdb":"9JA7","rmsd":3.0,"host_chain_rmsd":3.0,"apo_chain":"A","apo_len":33,"identity":100,"global_identity":100,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.297,"rg_delta":-0.04,"pocket_rmsd":3.99,"maxd":8.3,"bp_formed":1,"bp_broken":3,"bp_conserved":15}],"n_apo_copies":0},{"id":"8I7N_OJI_N_DA_529_pocket","title":"8I7N (OJI) vs 8HD7 (apo)","struct_title":"The Tet-S1 state of G264A mutated Tetrahymena group I intron with 6nt 3'/5'-exon and 2-aminopurine nucleoside","holo_pdb":"8I7N","ligand":"OJI","holo_chain":"N","holo_rna_chain":"N","lig_auth_chain":"N","nearest_rna_chain":"N","lig_resseq":"529","apo_pdb":"8HD7","apo_chain":"N","holo_len":418,"apo_len":419,"pocket_size":22,"thumb":{"holo":[[0.256,0.246],[0.253,0.277],[0.265,0.316],[0.289,0.349],[0.323,0.369],[0.367,0.368],[0.404,0.344],[0.43,0.313],[0.441,0.277],[0.447,0.253],[0.43,0.235],[0.407,0.231],[0.372,0.245],[0.402,0.267],[0.421,0.288],[0.434,0.321],[0.456,0.307],[0.43,0.337],[0.404,0.326],[0.372,0.337],[0.35,0.313],[0.338,0.284],[0.355,0.242],[0.368,0.248],[0.391,0.243],[0.399,0.267],[0.403,0.301],[0.381,0.333],[0.344,0.353],[0.301,0.361],[0.263,0.348],[0.226,0.321],[0.189,0.293],[0.172,0.347],[0.225,0.317],[0.208,0.376],[0.207,0.411],[0.204,0.422],[0.197,0.42],[0.2,0.398],[0.219,0.367],[0.243,0.33],[0.279,0.308],[0.316,0.305],[0.353,0.321],[0.37,0.344],[0.393,0.359],[0.37,0.401],[0.351,0.425],[0.34,0.437],[0.34,0.427],[0.34,0.395],[0.33,0.356],[0.307,0.321],[0.273,0.301],[0.232,0.299],[0.197,0.317],[0.166,0.348],[0.147,0.384],[0.139,0.407],[0.14,0.412],[0.119,0.42],[0.13,0.447],[0.143,0.468],[0.149,0.472],[0.138,0.466],[0.111,0.461],[0.073,0.464],[0.03,0.479],[0.007,0.511],[0.0,0.549],[0.013,0.585],[0.044,0.617],[0.076,0.636],[0.08,0.649],[0.123,0.644],[0.14,0.634],[0.188,0.635],[0.234,0.656],[0.243,0.627],[0.22,0.602],[0.196,0.564],[0.165,0.539],[0.146,0.533],[0.139,0.548],[0.134,0.576],[0.117,0.596],[0.094,0.593],[0.064,0.576],[0.035,0.548],[0.014,0.514],[0.018,0.477],[0.007,0.432],[0.045,0.424],[0.085,0.407],[0.125,0.408],[0.162,0.415],[0.181,0.417],[0.171,0.409],[0.18,0.424],[0.187,0.444],[0.174,0.465],[0.183,0.497],[0.201,0.535],[0.232,0.563],[0.27,0.58],[0.315,0.58],[0.351,0.571],[0.384,0.592],[0.414,0.575],[0.436,0.543],[0.485,0.539],[0.511,0.528],[0.503,0.492],[0.498,0.459],[0.483,0.42],[0.466,0.386],[0.451,0.357],[0.426,0.317],[0.436,0.292],[0.462,0.287],[0.502,0.294],[0.541,0.302],[0.58,0.311],[0.6,0.294],[0.612,0.269],[0.629,0.22],[0.635,0.255],[0.636,0.296],[0.649,0.349],[0.598,0.332],[0.572,0.325],[0.568,0.323],[0.582,0.34],[0.564,0.349],[0.628,0.346],[0.659,0.378],[0.679,0.411],[0.676,0.447],[0.656,0.479],[0.626,0.508],[0.595,0.525],[0.559,0.537],[0.526,0.543],[0.48,0.547],[0.451,0.559],[0.439,0.581],[0.446,0.612],[0.467,0.649],[0.49,0.684],[0.507,0.713],[0.506,0.727],[0.501,0.735],[0.472,0.738],[0.432,0.751],[0.389,0.786],[0.375,0.75],[0.371,0.712],[0.404,0.692],[0.444,0.686],[0.483,0.682],[0.521,0.683],[0.54,0.675],[0.541,0.659],[0.524,0.632],[0.501,0.598],[0.48,0.566],[0.481,0.537],[0.501,0.503],[0.501,0.453],[0.474,0.416],[0.449,0.431],[0.455,0.421],[0.39,0.426],[0.387,0.459],[0.408,0.463],[0.371,0.476],[0.384,0.451],[0.42,0.433],[0.462,0.428],[0.497,0.454],[0.513,0.492],[0.572,0.506],[0.596,0.456],[0.549,0.478],[0.546,0.478],[0.551,0.479],[0.512,0.458],[0.502,0.486],[0.525,0.542],[0.549,0.52],[0.597,0.477],[0.55,0.441],[0.613,0.448],[0.654,0.427],[0.678,0.398],[0.683,0.365],[0.665,0.33],[0.636,0.303],[0.601,0.283],[0.575,0.266],[0.573,0.248],[0.563,0.207],[0.506,0.189],[0.544,0.232],[0.56,0.272],[0.564,0.307],[0.561,0.336],[0.543,0.35],[0.509,0.354],[0.466,0.362],[0.416,0.362],[0.412,0.383],[0.41,0.398],[0.369,0.419],[0.42,0.432],[0.442,0.463],[0.467,0.501],[0.475,0.54],[0.466,0.568],[0.436,0.58],[0.397,0.587],[0.354,0.597],[0.316,0.605],[0.301,0.609],[0.302,0.622],[0.315,0.648],[0.335,0.684],[0.343,0.724],[0.334,0.762],[0.374,0.793],[0.358,0.805],[0.321,0.809],[0.278,0.813],[0.243,0.823],[0.216,0.838],[0.208,0.864],[0.223,0.898],[0.251,0.935],[0.26,0.981],[0.274,0.999],[0.255,0.983],[0.282,0.961],[0.306,0.934],[0.318,0.927],[0.304,0.908],[0.277,0.88],[0.253,0.844],[0.241,0.811],[0.241,0.785],[0.259,0.767],[0.294,0.756],[0.341,0.731],[0.377,0.736],[0.385,0.724],[0.384,0.687],[0.374,0.647],[0.36,0.613],[0.351,0.586],[0.344,0.53],[0.338,0.477],[0.374,0.528],[0.417,0.528],[0.445,0.503],[0.429,0.463],[0.432,0.453],[0.457,0.419],[0.496,0.458],[0.473,0.486],[0.453,0.523],[0.416,0.536],[0.372,0.538],[0.336,0.529],[0.315,0.522],[0.303,0.489],[0.301,0.455],[0.321,0.501],[0.314,0.544],[0.282,0.569],[0.242,0.572],[0.2,0.566],[0.158,0.546],[0.144,0.514],[0.147,0.479],[0.164,0.45],[0.179,0.443],[0.189,0.464],[0.189,0.499],[0.177,0.536],[0.152,0.567],[0.115,0.588],[0.074,0.587],[0.052,0.563],[0.0,0.538],[0.019,0.512],[0.045,0.527],[0.072,0.553],[0.108,0.577],[0.149,0.583],[0.188,0.571],[0.216,0.541],[0.231,0.502],[0.237,0.464],[0.236,0.455],[0.23,0.455],[0.265,0.394],[0.307,0.392],[0.333,0.41],[0.36,0.46],[0.415,0.435],[0.395,0.464],[0.344,0.458],[0.334,0.467],[0.359,0.479],[0.394,0.496],[0.432,0.489],[0.464,0.471],[0.485,0.438],[0.495,0.397],[0.537,0.37],[0.579,0.377],[0.606,0.409],[0.631,0.449],[0.646,0.472],[0.642,0.479],[0.627,0.469],[0.616,0.438],[0.611,0.393],[0.636,0.348],[0.614,0.339],[0.581,0.339],[0.569,0.377],[0.563,0.419],[0.569,0.459],[0.584,0.492],[0.597,0.509],[0.581,0.576],[0.56,0.603],[0.545,0.634],[0.531,0.647],[0.517,0.641],[0.499,0.619],[0.478,0.584],[0.453,0.551],[0.425,0.529],[0.389,0.539],[0.374,0.52],[0.346,0.542],[0.321,0.576],[0.293,0.607],[0.262,0.617],[0.196,0.603],[0.19,0.556],[0.19,0.522],[0.213,0.507],[0.234,0.522],[0.257,0.553],[0.276,0.593],[0.299,0.619],[0.323,0.629],[0.35,0.621],[0.375,0.592],[0.406,0.567],[0.437,0.542],[0.459,0.525],[0.482,0.522],[0.507,0.539],[0.535,0.57],[0.559,0.604],[0.577,0.632],[0.589,0.641],[0.598,0.642],[0.662,0.637],[0.609,0.618],[0.633,0.588],[0.666,0.562],[0.701,0.551],[0.733,0.554],[0.762,0.576],[0.788,0.613],[0.809,0.655],[0.814,0.67],[0.808,0.705],[0.825,0.68],[0.85,0.653],[0.868,0.619],[0.894,0.581],[0.93,0.58],[0.928,0.62],[0.94,0.68],[0.922,0.685],[0.936,0.644],[0.902,0.615],[0.88,0.587],[0.838,0.58],[0.811,0.596],[0.769,0.631],[0.753,0.667],[0.745,0.669],[0.766,0.707],[0.759,0.684],[0.744,0.65],[0.732,0.612],[0.714,0.575],[0.69,0.542],[0.656,0.529],[0.616,0.54],[0.605,0.48],[0.603,0.463],[0.59,0.434],[0.555,0.402],[0.514,0.39],[0.483,0.41],[0.46,0.391],[0.461,0.36],[0.451,0.365],[0.427,0.364],[0.427,0.382]],"apo":[[0.239,0.308],[0.223,0.271],[0.207,0.236],[0.201,0.208],[0.219,0.196],[0.238,0.183],[0.276,0.175],[0.318,0.17],[0.351,0.158],[0.376,0.15],[0.399,0.151],[0.387,0.11],[0.363,0.074],[0.334,0.044],[0.323,0.013],[0.341,0.0],[0.365,0.003],[0.379,0.03],[0.335,0.03],[0.315,0.061],[0.303,0.08],[0.303,0.096],[0.322,0.117],[0.337,0.155],[0.347,0.188],[0.337,0.212],[0.312,0.223],[0.274,0.232],[0.232,0.236],[0.195,0.24],[0.173,0.25],[0.164,0.272],[0.161,0.298],[0.186,0.327],[0.216,0.339],[0.211,0.383],[0.209,0.417],[0.207,0.424],[0.2,0.418],[0.204,0.393],[0.225,0.36],[0.247,0.325],[0.283,0.301],[0.321,0.301],[0.361,0.317],[0.373,0.338],[0.397,0.349],[0.391,0.403],[0.358,0.417],[0.342,0.43],[0.343,0.423],[0.345,0.393],[0.333,0.356],[0.314,0.32],[0.278,0.3],[0.238,0.297],[0.204,0.314],[0.174,0.347],[0.153,0.382],[0.144,0.408],[0.144,0.417],[0.125,0.429],[0.132,0.457],[0.147,0.478],[0.153,0.488],[0.142,0.488],[0.113,0.484],[0.073,0.49],[0.035,0.515],[0.009,0.544],[0.005,0.577],[0.022,0.61],[0.049,0.632],[0.079,0.658],[0.107,0.683],[0.132,0.654],[0.153,0.662],[0.196,0.66],[0.244,0.692],[0.25,0.662],[0.228,0.637],[0.2,0.601],[0.164,0.574],[0.146,0.571],[0.137,0.577],[0.141,0.601],[0.127,0.617],[0.104,0.607],[0.069,0.588],[0.039,0.559],[0.019,0.525],[0.031,0.493],[0.018,0.456],[0.052,0.438],[0.091,0.428],[0.131,0.426],[0.168,0.431],[0.185,0.433],[0.174,0.421],[0.185,0.431],[0.192,0.454],[0.18,0.48],[0.186,0.514],[0.205,0.552],[0.236,0.581],[0.274,0.595],[0.32,0.594],[0.358,0.589],[0.389,0.607],[0.42,0.589],[0.441,0.558],[0.488,0.562],[0.515,0.538],[0.51,0.501],[0.504,0.467],[0.49,0.427],[0.475,0.391],[0.466,0.358],[0.444,0.326],[0.453,0.304],[0.48,0.301],[0.519,0.309],[0.558,0.318],[0.595,0.326],[0.615,0.31],[0.63,0.283],[0.647,0.232],[0.651,0.264],[0.661,0.307],[0.666,0.366],[0.611,0.342],[0.585,0.335],[0.579,0.333],[0.591,0.344],[0.576,0.342],[0.637,0.347],[0.669,0.374],[0.684,0.41],[0.682,0.452],[0.662,0.485],[0.629,0.514],[0.595,0.528],[0.561,0.537],[0.527,0.545],[0.483,0.547],[0.453,0.557],[0.44,0.577],[0.445,0.606],[0.462,0.64],[0.485,0.676],[0.504,0.705],[0.507,0.724],[0.5,0.735],[0.473,0.742],[0.435,0.753],[0.398,0.794],[0.375,0.752],[0.373,0.713],[0.407,0.694],[0.447,0.688],[0.486,0.686],[0.522,0.687],[0.538,0.676],[0.537,0.657],[0.521,0.627],[0.497,0.593],[0.477,0.558],[0.479,0.531],[0.506,0.499],[0.498,0.446],[0.48,0.411],[0.449,0.423],[0.459,0.419],[0.394,0.425],[0.389,0.454],[0.407,0.455],[0.366,0.463],[0.404,0.437],[0.443,0.427],[0.479,0.434],[0.522,0.453],[0.508,0.479],[0.567,0.507],[0.598,0.457],[0.551,0.473],[0.55,0.475],[0.556,0.481],[0.516,0.466],[0.507,0.494],[0.527,0.55],[0.552,0.522],[0.605,0.483],[0.551,0.447],[0.615,0.454],[0.66,0.438],[0.686,0.406],[0.693,0.367],[0.673,0.328],[0.643,0.301],[0.612,0.28],[0.589,0.259],[0.58,0.237],[0.586,0.222],[0.532,0.2],[0.566,0.241],[0.579,0.282],[0.58,0.319],[0.575,0.349],[0.558,0.365],[0.522,0.371],[0.483,0.374],[0.431,0.371],[0.423,0.388],[0.42,0.403],[0.376,0.417],[0.427,0.436],[0.448,0.468],[0.472,0.507],[0.48,0.545],[0.47,0.574],[0.44,0.591],[0.402,0.6],[0.359,0.611],[0.321,0.617],[0.304,0.617],[0.304,0.628],[0.316,0.653],[0.335,0.688],[0.344,0.727],[0.334,0.769],[0.374,0.799],[0.358,0.814],[0.321,0.818],[0.28,0.82],[0.241,0.825],[0.215,0.84],[0.209,0.868],[0.222,0.9],[0.246,0.931],[0.268,0.956],[0.279,1.0],[0.267,0.992],[0.294,0.965],[0.33,0.946],[0.316,0.931],[0.302,0.907],[0.275,0.879],[0.25,0.841],[0.24,0.808],[0.242,0.784],[0.26,0.77],[0.297,0.763],[0.337,0.74],[0.377,0.745],[0.386,0.729],[0.387,0.691],[0.377,0.651],[0.362,0.618],[0.355,0.593],[0.346,0.541],[0.343,0.488],[0.378,0.542],[0.426,0.54],[0.456,0.512],[0.432,0.475],[0.439,0.469],[0.465,0.437],[0.504,0.476],[0.48,0.508],[0.458,0.541],[0.421,0.559],[0.377,0.561],[0.34,0.55],[0.318,0.541],[0.309,0.505],[0.307,0.469],[0.327,0.514],[0.319,0.555],[0.286,0.579],[0.246,0.585],[0.204,0.58],[0.162,0.558],[0.147,0.523],[0.151,0.488],[0.168,0.455],[0.183,0.446],[0.192,0.464],[0.194,0.496],[0.18,0.534],[0.154,0.563],[0.118,0.589],[0.079,0.589],[0.052,0.561],[0.005,0.534],[0.024,0.512],[0.052,0.529],[0.079,0.556],[0.115,0.577],[0.153,0.585],[0.193,0.57],[0.222,0.54],[0.238,0.502],[0.241,0.468],[0.24,0.462],[0.234,0.466],[0.268,0.405],[0.311,0.402],[0.334,0.418],[0.366,0.474],[0.421,0.449],[0.4,0.481],[0.348,0.478],[0.339,0.49],[0.365,0.503],[0.402,0.519],[0.441,0.515],[0.474,0.495],[0.496,0.46],[0.502,0.417],[0.551,0.394],[0.59,0.403],[0.616,0.433],[0.638,0.477],[0.654,0.498],[0.651,0.5],[0.635,0.491],[0.626,0.456],[0.627,0.41],[0.655,0.368],[0.628,0.356],[0.591,0.356],[0.581,0.396],[0.573,0.438],[0.58,0.48],[0.592,0.515],[0.601,0.533],[0.592,0.599],[0.569,0.628],[0.548,0.658],[0.536,0.675],[0.523,0.671],[0.507,0.649],[0.487,0.615],[0.462,0.581],[0.437,0.556],[0.395,0.568],[0.385,0.548],[0.356,0.567],[0.32,0.597],[0.302,0.635],[0.271,0.643],[0.208,0.63],[0.197,0.588],[0.193,0.556],[0.214,0.537],[0.233,0.557],[0.257,0.587],[0.28,0.625],[0.304,0.65],[0.333,0.656],[0.359,0.652],[0.382,0.619],[0.41,0.592],[0.44,0.565],[0.468,0.548],[0.494,0.55],[0.521,0.569],[0.547,0.601],[0.567,0.636],[0.58,0.665],[0.591,0.665],[0.599,0.669],[0.661,0.669],[0.619,0.642],[0.642,0.613],[0.673,0.585],[0.708,0.572],[0.74,0.579],[0.768,0.605],[0.791,0.643],[0.804,0.687],[0.807,0.706],[0.799,0.733],[0.815,0.709],[0.84,0.681],[0.867,0.651],[0.898,0.61],[0.93,0.614],[0.932,0.652],[0.941,0.708],[0.924,0.713],[0.939,0.679],[0.906,0.652],[0.888,0.619],[0.85,0.606],[0.822,0.613],[0.781,0.638],[0.762,0.673],[0.754,0.691],[0.758,0.729],[0.754,0.71],[0.749,0.681],[0.74,0.642],[0.722,0.604],[0.696,0.571],[0.659,0.557],[0.623,0.566],[0.609,0.516],[0.61,0.498],[0.599,0.467],[0.582,0.431],[0.544,0.421],[0.505,0.415],[0.478,0.433],[0.459,0.382],[0.43,0.364],[0.424,0.392],[0.442,0.4],[0.426,0.445]]},"method":"EM","resolution":2.98,"rna_type":"Group I intron ribozyme","rna_group":"Catalytic (ribozyme)","num_chains":1,"total_rna_len":418,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["junction","internal loop","bulge","stem","single strand"],"rmsd":8.61,"host_chain_rmsd":8.61,"pocket_rmsd":11.03,"lig_bsa":366.9,"ligand_burial":0.847,"tm_score":0.915,"rg_apo":39.57,"rg_holo":37.95,"rg_delta":-1.62,"bp_rewire_src":"dssr","bp_formed":26,"bp_broken":29,"bp_conserved":169,"bp_formed_wc":1,"bp_broken_wc":4,"bp_conserved_wc":134,"maxd":53.6,"water":0,"hbonds":7,"mw":267.2,"logp":-1.98,"thumb_img":true,"thumb_v":1785389627,"apo_alts":[{"pdb":"8HD6","rmsd":13.89,"host_chain_rmsd":13.89,"apo_chain":"N","apo_len":419,"identity":100,"global_identity":100,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.911,"rg_delta":-2.86,"pocket_rmsd":19.72,"maxd":72.4,"bp_formed":26,"bp_broken":25,"bp_conserved":169}],"n_apo_copies":0},{"id":"8OLS_VTE_A_VA_447_pocket","title":"8OLS (VTE) vs 8RUL (apo)","struct_title":"Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and intronistat B","holo_pdb":"8OLS","ligand":"VTE","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"447","apo_pdb":"8RUL","apo_chain":"A","holo_len":390,"apo_len":392,"pocket_size":16,"thumb":{"holo":[[0.577,0.387],[0.59,0.307],[0.604,0.297],[0.629,0.311],[0.7,0.288],[0.716,0.249],[0.709,0.206],[0.683,0.165],[0.636,0.137],[0.585,0.128],[0.524,0.144],[0.493,0.136],[0.489,0.194],[0.474,0.211],[0.465,0.194],[0.454,0.156],[0.438,0.111],[0.414,0.065],[0.382,0.034],[0.345,0.03],[0.308,0.046],[0.28,0.084],[0.248,0.134],[0.204,0.169],[0.16,0.146],[0.133,0.099],[0.11,0.092],[0.085,0.1],[0.075,0.123],[0.083,0.14],[0.113,0.125],[0.148,0.089],[0.178,0.103],[0.176,0.134],[0.231,0.15],[0.202,0.188],[0.136,0.195],[0.091,0.188],[0.071,0.171],[0.082,0.159],[0.068,0.135],[0.099,0.138],[0.135,0.154],[0.163,0.195],[0.17,0.245],[0.154,0.294],[0.109,0.316],[0.074,0.357],[0.046,0.428],[0.047,0.481],[0.083,0.476],[0.108,0.448],[0.113,0.403],[0.097,0.355],[0.071,0.312],[0.054,0.286],[0.072,0.262],[0.026,0.278],[0.039,0.302],[0.077,0.304],[0.13,0.293],[0.174,0.264],[0.199,0.216],[0.19,0.166],[0.232,0.159],[0.272,0.13],[0.306,0.154],[0.344,0.191],[0.361,0.218],[0.364,0.232],[0.36,0.269],[0.362,0.263],[0.384,0.228],[0.414,0.182],[0.454,0.156],[0.501,0.164],[0.555,0.15],[0.584,0.189],[0.604,0.235],[0.619,0.272],[0.632,0.284],[0.696,0.326],[0.646,0.281],[0.651,0.23],[0.668,0.179],[0.689,0.133],[0.726,0.117],[0.773,0.121],[0.811,0.156],[0.871,0.192],[0.843,0.22],[0.815,0.244],[0.776,0.213],[0.746,0.171],[0.708,0.142],[0.665,0.131],[0.631,0.15],[0.604,0.186],[0.584,0.235],[0.568,0.265],[0.562,0.286],[0.552,0.267],[0.534,0.237],[0.525,0.296],[0.494,0.321],[0.542,0.291],[0.552,0.202],[0.542,0.16],[0.524,0.181],[0.501,0.171],[0.458,0.144],[0.414,0.149],[0.371,0.177],[0.336,0.203],[0.302,0.257],[0.301,0.262],[0.311,0.269],[0.309,0.251],[0.292,0.22],[0.272,0.216],[0.284,0.236],[0.269,0.274],[0.245,0.321],[0.217,0.364],[0.205,0.402],[0.21,0.424],[0.24,0.431],[0.281,0.433],[0.333,0.433],[0.378,0.436],[0.414,0.451],[0.437,0.485],[0.507,0.495],[0.533,0.523],[0.534,0.571],[0.496,0.636],[0.48,0.591],[0.535,0.642],[0.577,0.629],[0.598,0.58],[0.574,0.54],[0.561,0.487],[0.521,0.501],[0.442,0.534],[0.419,0.586],[0.399,0.63],[0.388,0.649],[0.388,0.659],[0.418,0.654],[0.459,0.672],[0.434,0.743],[0.41,0.672],[0.389,0.654],[0.362,0.613],[0.347,0.577],[0.328,0.564],[0.305,0.577],[0.269,0.598],[0.235,0.641],[0.199,0.677],[0.169,0.696],[0.142,0.69],[0.112,0.665],[0.1,0.624],[0.103,0.572],[0.109,0.532],[0.095,0.488],[0.079,0.412],[0.103,0.374],[0.131,0.344],[0.168,0.346],[0.215,0.372],[0.264,0.39],[0.28,0.43],[0.286,0.476],[0.298,0.498],[0.31,0.495],[0.344,0.559],[0.393,0.559],[0.462,0.518],[0.445,0.477],[0.414,0.435],[0.396,0.39],[0.363,0.369],[0.325,0.371],[0.292,0.402],[0.26,0.441],[0.237,0.474],[0.227,0.481],[0.221,0.458],[0.223,0.454],[0.203,0.43],[0.163,0.399],[0.132,0.364],[0.096,0.338],[0.058,0.339],[0.018,0.368],[0.008,0.321],[0.0,0.317],[0.007,0.332],[0.021,0.357],[0.044,0.398],[0.061,0.449],[0.064,0.495],[0.036,0.523],[0.017,0.589],[0.065,0.543],[0.11,0.517],[0.145,0.515],[0.164,0.524],[0.175,0.544],[0.178,0.586],[0.191,0.632],[0.2,0.68],[0.211,0.72],[0.235,0.737],[0.276,0.72],[0.299,0.683],[0.333,0.631],[0.374,0.611],[0.427,0.602],[0.488,0.558],[0.44,0.593],[0.422,0.583],[0.376,0.596],[0.345,0.604],[0.335,0.594],[0.349,0.572],[0.363,0.538],[0.383,0.489],[0.386,0.443],[0.382,0.406],[0.349,0.379],[0.35,0.293],[0.354,0.33],[0.324,0.28],[0.304,0.364],[0.245,0.378],[0.203,0.374],[0.169,0.365],[0.161,0.342],[0.176,0.308],[0.195,0.264],[0.186,0.177],[0.245,0.214],[0.276,0.191],[0.293,0.178],[0.315,0.146],[0.344,0.107],[0.374,0.066],[0.411,0.039],[0.449,0.036],[0.477,0.066],[0.5,0.106],[0.517,0.151],[0.532,0.199],[0.542,0.219],[0.556,0.226],[0.591,0.272],[0.577,0.24],[0.582,0.169],[0.623,0.132],[0.677,0.13],[0.718,0.153],[0.75,0.195],[0.772,0.24],[0.811,0.276],[0.823,0.319],[0.82,0.337],[0.813,0.32],[0.822,0.288],[0.851,0.25],[0.893,0.222],[0.941,0.23],[1.0,0.266],[0.995,0.255],[0.987,0.222],[0.947,0.202],[0.904,0.186],[0.854,0.198],[0.807,0.224],[0.768,0.251],[0.755,0.273],[0.737,0.297],[0.701,0.311],[0.643,0.368],[0.647,0.423],[0.661,0.471],[0.732,0.508],[0.755,0.458],[0.777,0.443],[0.828,0.421],[0.859,0.4],[0.876,0.378],[0.879,0.337],[0.858,0.289],[0.821,0.247],[0.84,0.235],[0.845,0.226],[0.825,0.191],[0.773,0.181],[0.747,0.181],[0.731,0.187],[0.725,0.171],[0.748,0.144],[0.78,0.096],[0.782,0.029],[0.841,0.007],[0.797,0.0],[0.846,0.034],[0.843,0.067],[0.853,0.11],[0.825,0.158],[0.799,0.202],[0.775,0.227],[0.776,0.239],[0.749,0.25],[0.743,0.272],[0.757,0.309],[0.787,0.348],[0.824,0.383],[0.857,0.411],[0.852,0.44],[0.834,0.477],[0.812,0.485],[0.773,0.509],[0.731,0.533],[0.711,0.569],[0.711,0.61],[0.744,0.65],[0.784,0.681],[0.818,0.73],[0.872,0.732],[0.839,0.719],[0.807,0.744],[0.766,0.773],[0.73,0.816],[0.733,0.86],[0.695,0.917],[0.759,0.905],[0.717,0.883],[0.726,0.844],[0.699,0.806],[0.711,0.763],[0.742,0.721],[0.774,0.686],[0.796,0.65],[0.853,0.634],[0.862,0.633],[0.84,0.634],[0.801,0.619],[0.762,0.587],[0.729,0.548],[0.718,0.511],[0.674,0.496],[0.626,0.499],[0.573,0.505],[0.559,0.483],[0.541,0.477],[0.54,0.451],[0.552,0.413],[0.564,0.362],[0.566,0.318],[0.551,0.296],[0.528,0.285],[0.495,0.298],[0.458,0.322],[0.413,0.35],[0.385,0.341],[0.39,0.393],[0.408,0.426],[0.447,0.424],[0.484,0.393],[0.524,0.351],[0.596,0.388],[0.578,0.434],[0.552,0.352],[0.59,0.332],[0.621,0.331],[0.634,0.357],[0.625,0.403],[0.601,0.455],[0.595,0.502],[0.587,0.539],[0.593,0.56],[0.609,0.56],[0.656,0.573],[0.687,0.566],[0.73,0.578],[0.775,0.635]],"apo":[[0.361,0.427],[0.397,0.406],[0.451,0.375],[0.493,0.37],[0.57,0.369],[0.587,0.304],[0.602,0.294],[0.629,0.309],[0.698,0.286],[0.712,0.248],[0.708,0.203],[0.682,0.162],[0.632,0.132],[0.582,0.124],[0.524,0.141],[0.491,0.133],[0.488,0.195],[0.475,0.205],[0.463,0.195],[0.451,0.158],[0.434,0.112],[0.411,0.068],[0.382,0.039],[0.347,0.029],[0.309,0.044],[0.278,0.083],[0.247,0.132],[0.205,0.166],[0.166,0.145],[0.14,0.1],[0.115,0.093],[0.086,0.098],[0.078,0.118],[0.083,0.139],[0.112,0.122],[0.144,0.087],[0.175,0.105],[0.174,0.138],[0.231,0.148],[0.204,0.186],[0.139,0.194],[0.092,0.185],[0.073,0.166],[0.084,0.158],[0.071,0.134],[0.099,0.136],[0.134,0.152],[0.167,0.194],[0.172,0.243],[0.155,0.292],[0.111,0.316],[0.076,0.359],[0.048,0.43],[0.051,0.484],[0.09,0.477],[0.113,0.447],[0.118,0.402],[0.101,0.355],[0.077,0.313],[0.055,0.286],[0.074,0.261],[0.029,0.278],[0.039,0.304],[0.078,0.304],[0.129,0.293],[0.174,0.264],[0.2,0.217],[0.191,0.171],[0.233,0.156],[0.274,0.129],[0.308,0.155],[0.346,0.192],[0.364,0.223],[0.362,0.231],[0.358,0.264],[0.361,0.262],[0.383,0.223],[0.413,0.177],[0.454,0.155],[0.501,0.162],[0.555,0.147],[0.581,0.187],[0.601,0.233],[0.614,0.266],[0.633,0.281],[0.689,0.331],[0.644,0.281],[0.649,0.233],[0.664,0.18],[0.688,0.136],[0.725,0.119],[0.775,0.125],[0.812,0.157],[0.87,0.193],[0.841,0.222],[0.812,0.244],[0.775,0.213],[0.744,0.17],[0.707,0.143],[0.664,0.13],[0.629,0.149],[0.602,0.188],[0.579,0.231],[0.565,0.26],[0.559,0.28],[0.548,0.27],[0.53,0.234],[0.522,0.294],[0.493,0.32],[0.54,0.288],[0.551,0.2],[0.542,0.161],[0.526,0.181],[0.5,0.171],[0.455,0.139],[0.412,0.145],[0.374,0.176],[0.333,0.202],[0.301,0.253],[0.301,0.261],[0.31,0.268],[0.308,0.25],[0.291,0.219],[0.272,0.214],[0.284,0.236],[0.267,0.276],[0.241,0.321],[0.216,0.364],[0.201,0.4],[0.208,0.424],[0.239,0.431],[0.279,0.432],[0.332,0.433],[0.379,0.436],[0.412,0.451],[0.436,0.486],[0.505,0.494],[0.533,0.524],[0.535,0.571],[0.5,0.637],[0.478,0.59],[0.536,0.64],[0.578,0.625],[0.594,0.58],[0.572,0.543],[0.556,0.483],[0.521,0.498],[0.443,0.535],[0.426,0.584],[0.398,0.63],[0.389,0.651],[0.39,0.658],[0.42,0.652],[0.46,0.673],[0.432,0.743],[0.412,0.671],[0.389,0.652],[0.362,0.615],[0.347,0.578],[0.328,0.57],[0.307,0.583],[0.271,0.609],[0.237,0.645],[0.207,0.684],[0.172,0.699],[0.146,0.697],[0.127,0.661],[0.111,0.622],[0.11,0.569],[0.108,0.529],[0.1,0.489],[0.081,0.412],[0.105,0.374],[0.133,0.343],[0.169,0.345],[0.215,0.374],[0.264,0.391],[0.28,0.432],[0.287,0.476],[0.298,0.495],[0.309,0.497],[0.341,0.562],[0.395,0.557],[0.463,0.521],[0.449,0.476],[0.415,0.434],[0.392,0.381],[0.367,0.37],[0.329,0.369],[0.297,0.406],[0.265,0.446],[0.239,0.474],[0.227,0.485],[0.221,0.457],[0.221,0.452],[0.201,0.428],[0.16,0.396],[0.127,0.363],[0.095,0.338],[0.058,0.339],[0.019,0.37],[0.01,0.322],[0.006,0.319],[0.011,0.332],[0.029,0.358],[0.049,0.397],[0.066,0.444],[0.067,0.49],[0.041,0.518],[0.008,0.575],[0.066,0.542],[0.11,0.525],[0.144,0.515],[0.164,0.523],[0.176,0.544],[0.181,0.581],[0.19,0.626],[0.196,0.676],[0.211,0.713],[0.246,0.737],[0.277,0.719],[0.304,0.689],[0.338,0.638],[0.367,0.614],[0.426,0.609],[0.481,0.557],[0.441,0.593],[0.426,0.583],[0.38,0.595],[0.345,0.606],[0.337,0.594],[0.35,0.573],[0.365,0.533],[0.385,0.487],[0.388,0.443],[0.382,0.408],[0.35,0.378],[0.348,0.292],[0.357,0.327],[0.324,0.281],[0.304,0.363],[0.245,0.378],[0.204,0.373],[0.172,0.365],[0.16,0.343],[0.173,0.307],[0.195,0.263],[0.19,0.179],[0.244,0.215],[0.274,0.192],[0.292,0.178],[0.313,0.146],[0.344,0.109],[0.372,0.066],[0.407,0.043],[0.445,0.038],[0.479,0.064],[0.502,0.107],[0.517,0.15],[0.53,0.199],[0.541,0.218],[0.555,0.225],[0.59,0.269],[0.575,0.237],[0.581,0.166],[0.624,0.132],[0.677,0.125],[0.717,0.153],[0.746,0.194],[0.773,0.237],[0.811,0.275],[0.82,0.319],[0.817,0.336],[0.809,0.321],[0.82,0.29],[0.847,0.249],[0.893,0.223],[0.94,0.234],[0.996,0.271],[0.992,0.259],[0.987,0.226],[0.949,0.205],[0.902,0.188],[0.855,0.198],[0.804,0.226],[0.764,0.251],[0.75,0.273],[0.736,0.295],[0.7,0.308],[0.645,0.37],[0.648,0.425],[0.664,0.473],[0.732,0.507],[0.76,0.46],[0.786,0.439],[0.83,0.426],[0.858,0.401],[0.875,0.379],[0.875,0.336],[0.854,0.289],[0.82,0.247],[0.838,0.233],[0.842,0.226],[0.823,0.19],[0.77,0.177],[0.745,0.18],[0.73,0.189],[0.736,0.172],[0.75,0.145],[0.775,0.105],[0.783,0.04],[0.839,0.003],[0.79,0.012],[0.837,0.05],[0.834,0.069],[0.849,0.11],[0.828,0.152],[0.797,0.196],[0.776,0.22],[0.775,0.234],[0.748,0.248],[0.74,0.269],[0.755,0.308],[0.787,0.348],[0.821,0.381],[0.852,0.407],[0.848,0.44],[0.83,0.486],[0.814,0.49],[0.773,0.509],[0.734,0.532],[0.713,0.567],[0.716,0.609],[0.741,0.651],[0.783,0.683],[0.817,0.729],[0.872,0.731],[0.839,0.723],[0.811,0.747],[0.764,0.777],[0.732,0.818],[0.741,0.865],[0.687,0.914],[0.756,0.914],[0.715,0.887],[0.716,0.848],[0.696,0.808],[0.708,0.764],[0.744,0.726],[0.775,0.691],[0.795,0.655],[0.854,0.64],[0.862,0.641],[0.841,0.637],[0.802,0.621],[0.763,0.589],[0.73,0.551],[0.72,0.513],[0.674,0.499],[0.625,0.499],[0.576,0.505],[0.563,0.484],[0.544,0.478],[0.539,0.452],[0.552,0.41],[0.561,0.361],[0.566,0.319],[0.552,0.296],[0.527,0.285],[0.494,0.294],[0.46,0.325],[0.412,0.35],[0.387,0.342],[0.392,0.393],[0.409,0.429],[0.447,0.426],[0.484,0.392],[0.522,0.352],[0.596,0.387],[0.581,0.433],[0.552,0.353],[0.59,0.332],[0.623,0.332],[0.631,0.358],[0.625,0.402],[0.604,0.455],[0.597,0.5],[0.588,0.536],[0.593,0.559],[0.611,0.562],[0.651,0.569],[0.698,0.563]]},"method":"X-ray","resolution":3.0,"rna_type":"Group II intron ribozyme","rna_group":"Catalytic (ribozyme)","num_chains":1,"total_rna_len":390,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["junction","internal loop","hairpin loop","bulge","stem","single strand"],"rmsd":0.63,"host_chain_rmsd":0.63,"pocket_rmsd":0.89,"lig_bsa":166.8,"ligand_burial":0.259,"tm_score":0.991,"rg_apo":36.32,"rg_holo":36.34,"rg_delta":0.02,"bp_rewire_src":"dssr","bp_formed":10,"bp_broken":17,"bp_conserved":172,"bp_formed_wc":1,"bp_broken_wc":3,"bp_conserved_wc":116,"maxd":3.5,"water":0,"hbonds":2,"mw":410.4,"logp":2.61,"thumb_img":true,"thumb_v":1785389626,"apo_alts":[{"pdb":"3BWP","rmsd":1.19,"host_chain_rmsd":1.19,"apo_chain":"A","apo_len":356,"identity":100,"global_identity":94,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.903,"rg_delta":-0.2,"pocket_rmsd":1.35,"maxd":7.0,"bp_formed":34,"bp_broken":15,"bp_conserved":148},{"pdb":"4E8M","rmsd":0.43,"host_chain_rmsd":0.43,"apo_chain":"A","apo_len":394,"identity":100,"global_identity":100,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.998,"rg_delta":-0.18,"pocket_rmsd":0.37,"maxd":1.6,"bp_formed":3,"bp_broken":17,"bp_conserved":179},{"pdb":"4E8N","rmsd":0.53,"host_chain_rmsd":0.53,"apo_chain":"A","apo_len":392,"identity":100,"global_identity":100,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.992,"rg_delta":-0.04,"pocket_rmsd":0.48,"maxd":2.4,"bp_formed":7,"bp_broken":17,"bp_conserved":175},{"pdb":"4E8Q","rmsd":0.58,"host_chain_rmsd":0.58,"apo_chain":"A","apo_len":392,"identity":100,"global_identity":100,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.991,"rg_delta":-0.06,"pocket_rmsd":0.6,"maxd":2.3,"bp_formed":8,"bp_broken":14,"bp_conserved":174},{"pdb":"4E8R","rmsd":0.7,"host_chain_rmsd":0.7,"apo_chain":"A","apo_len":392,"identity":100,"global_identity":100,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.99,"rg_delta":-0.09,"pocket_rmsd":0.6,"maxd":3.7,"bp_formed":7,"bp_broken":20,"bp_conserved":175},{"pdb":"4E8V","rmsd":1.18,"host_chain_rmsd":1.18,"apo_chain":"A","apo_len":388,"identity":100,"global_identity":100,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.981,"rg_delta":-0.38,"pocket_rmsd":1.16,"maxd":9.0,"bp_formed":18,"bp_broken":18,"bp_conserved":164},{"pdb":"4FAQ","rmsd":0.96,"host_chain_rmsd":0.96,"apo_chain":"A","apo_len":395,"identity":100,"global_identity":99,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.989,"rg_delta":-0.17,"pocket_rmsd":0.96,"maxd":8.0,"bp_formed":7,"bp_broken":20,"bp_conserved":175},{"pdb":"4FAU","rmsd":0.98,"host_chain_rmsd":0.98,"apo_chain":"A","apo_len":392,"identity":100,"global_identity":98,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.987,"rg_delta":-0.18,"pocket_rmsd":3.04,"maxd":11.8,"bp_formed":7,"bp_broken":18,"bp_conserved":175},{"pdb":"4FAX","rmsd":0.92,"host_chain_rmsd":0.92,"apo_chain":"A","apo_len":391,"identity":100,"global_identity":99,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.985,"rg_delta":-0.05,"pocket_rmsd":1.65,"maxd":5.8,"bp_formed":14,"bp_broken":15,"bp_conserved":168},{"pdb":"5J01","rmsd":3.12,"host_chain_rmsd":3.12,"apo_chain":"A","apo_len":414,"identity":98,"global_identity":91,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.933,"rg_delta":0.44,"pocket_rmsd":3.13,"maxd":22.4,"bp_formed":7,"bp_broken":30,"bp_conserved":175},{"pdb":"8OLW","rmsd":1.03,"host_chain_rmsd":1.03,"apo_chain":"A","apo_len":395,"identity":100,"global_identity":99,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.988,"rg_delta":-0.04,"pocket_rmsd":1.36,"maxd":8.3,"bp_formed":13,"bp_broken":24,"bp_conserved":169}],"n_apo_copies":0},{"id":"8OLV_VTR_A_RA_443_pocket","title":"8OLV (VTR) vs 8RUL (apo)","struct_title":"Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and ARN25850","holo_pdb":"8OLV","ligand":"VTR","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"443","apo_pdb":"8RUL","apo_chain":"A","holo_len":394,"apo_len":392,"pocket_size":19,"thumb":{"holo":[[0.397,0.383],[0.411,0.436],[0.464,0.445],[0.506,0.384],[0.566,0.384],[0.588,0.309],[0.604,0.296],[0.629,0.312],[0.7,0.286],[0.716,0.25],[0.712,0.204],[0.684,0.163],[0.636,0.137],[0.586,0.129],[0.523,0.143],[0.492,0.136],[0.488,0.196],[0.475,0.208],[0.465,0.192],[0.453,0.157],[0.439,0.111],[0.415,0.066],[0.383,0.036],[0.345,0.027],[0.306,0.044],[0.277,0.084],[0.247,0.131],[0.2,0.17],[0.156,0.146],[0.13,0.1],[0.105,0.095],[0.082,0.103],[0.075,0.123],[0.083,0.144],[0.113,0.125],[0.145,0.089],[0.177,0.103],[0.175,0.135],[0.229,0.149],[0.201,0.188],[0.134,0.197],[0.089,0.19],[0.067,0.173],[0.079,0.161],[0.064,0.136],[0.095,0.139],[0.131,0.153],[0.162,0.193],[0.167,0.243],[0.153,0.294],[0.109,0.316],[0.073,0.36],[0.045,0.431],[0.049,0.486],[0.088,0.479],[0.112,0.45],[0.114,0.403],[0.097,0.355],[0.071,0.312],[0.052,0.288],[0.07,0.264],[0.025,0.281],[0.037,0.305],[0.077,0.306],[0.127,0.295],[0.173,0.263],[0.195,0.217],[0.188,0.167],[0.229,0.161],[0.271,0.131],[0.303,0.154],[0.344,0.19],[0.358,0.221],[0.363,0.234],[0.358,0.271],[0.361,0.264],[0.383,0.23],[0.412,0.183],[0.453,0.157],[0.5,0.165],[0.556,0.151],[0.583,0.189],[0.602,0.235],[0.619,0.273],[0.63,0.284],[0.694,0.33],[0.644,0.281],[0.648,0.231],[0.665,0.18],[0.686,0.134],[0.725,0.115],[0.771,0.123],[0.811,0.155],[0.87,0.191],[0.84,0.22],[0.814,0.243],[0.776,0.214],[0.746,0.17],[0.707,0.143],[0.662,0.129],[0.627,0.149],[0.602,0.189],[0.582,0.235],[0.568,0.266],[0.561,0.285],[0.55,0.269],[0.533,0.238],[0.524,0.296],[0.494,0.323],[0.541,0.292],[0.552,0.202],[0.543,0.162],[0.525,0.181],[0.5,0.171],[0.456,0.143],[0.413,0.149],[0.37,0.179],[0.333,0.204],[0.301,0.261],[0.298,0.261],[0.31,0.27],[0.307,0.252],[0.289,0.22],[0.27,0.216],[0.284,0.234],[0.27,0.274],[0.244,0.321],[0.218,0.365],[0.206,0.401],[0.21,0.426],[0.24,0.433],[0.281,0.435],[0.332,0.435],[0.381,0.438],[0.416,0.452],[0.441,0.485],[0.508,0.497],[0.533,0.523],[0.534,0.574],[0.497,0.64],[0.481,0.593],[0.535,0.644],[0.578,0.631],[0.597,0.58],[0.576,0.542],[0.565,0.487],[0.524,0.502],[0.445,0.535],[0.423,0.588],[0.402,0.632],[0.392,0.647],[0.39,0.66],[0.419,0.655],[0.462,0.676],[0.431,0.747],[0.413,0.677],[0.389,0.655],[0.362,0.617],[0.344,0.58],[0.327,0.569],[0.305,0.579],[0.27,0.602],[0.239,0.65],[0.202,0.68],[0.176,0.697],[0.147,0.698],[0.123,0.664],[0.098,0.625],[0.103,0.577],[0.107,0.532],[0.094,0.496],[0.079,0.415],[0.103,0.376],[0.132,0.346],[0.168,0.347],[0.215,0.376],[0.263,0.392],[0.281,0.434],[0.287,0.478],[0.296,0.501],[0.309,0.498],[0.342,0.564],[0.392,0.555],[0.462,0.525],[0.448,0.489],[0.425,0.444],[0.401,0.401],[0.369,0.372],[0.327,0.373],[0.291,0.407],[0.262,0.448],[0.235,0.476],[0.226,0.484],[0.221,0.461],[0.223,0.457],[0.202,0.431],[0.163,0.399],[0.13,0.367],[0.095,0.342],[0.057,0.342],[0.017,0.371],[0.008,0.324],[0.0,0.318],[0.006,0.332],[0.023,0.359],[0.045,0.4],[0.063,0.449],[0.066,0.494],[0.038,0.528],[0.018,0.566],[0.064,0.543],[0.111,0.519],[0.143,0.516],[0.163,0.525],[0.172,0.544],[0.179,0.583],[0.191,0.633],[0.198,0.681],[0.213,0.722],[0.244,0.742],[0.281,0.723],[0.301,0.689],[0.335,0.639],[0.374,0.612],[0.429,0.608],[0.488,0.564],[0.441,0.595],[0.422,0.587],[0.377,0.598],[0.348,0.606],[0.338,0.596],[0.351,0.574],[0.364,0.538],[0.386,0.487],[0.389,0.443],[0.383,0.406],[0.35,0.38],[0.349,0.292],[0.355,0.329],[0.323,0.28],[0.304,0.366],[0.246,0.38],[0.204,0.375],[0.171,0.367],[0.162,0.344],[0.175,0.307],[0.195,0.263],[0.186,0.178],[0.245,0.215],[0.276,0.189],[0.292,0.179],[0.314,0.144],[0.342,0.105],[0.373,0.065],[0.412,0.038],[0.449,0.037],[0.477,0.065],[0.501,0.105],[0.519,0.152],[0.533,0.198],[0.543,0.218],[0.557,0.225],[0.591,0.271],[0.577,0.24],[0.582,0.169],[0.624,0.132],[0.675,0.13],[0.721,0.154],[0.75,0.195],[0.772,0.239],[0.812,0.275],[0.826,0.319],[0.821,0.336],[0.812,0.321],[0.822,0.288],[0.85,0.249],[0.892,0.223],[0.942,0.228],[1.0,0.267],[0.996,0.253],[0.989,0.222],[0.949,0.2],[0.903,0.185],[0.855,0.197],[0.807,0.223],[0.767,0.251],[0.754,0.271],[0.739,0.296],[0.701,0.31],[0.645,0.368],[0.647,0.427],[0.663,0.473],[0.73,0.507],[0.76,0.461],[0.78,0.447],[0.832,0.423],[0.863,0.399],[0.878,0.378],[0.878,0.335],[0.858,0.288],[0.823,0.246],[0.839,0.233],[0.846,0.225],[0.825,0.19],[0.774,0.176],[0.746,0.181],[0.727,0.188],[0.729,0.176],[0.745,0.148],[0.782,0.1],[0.784,0.029],[0.842,0.005],[0.798,0.0],[0.837,0.027],[0.837,0.069],[0.852,0.104],[0.832,0.155],[0.802,0.199],[0.777,0.224],[0.776,0.238],[0.752,0.25],[0.744,0.27],[0.758,0.309],[0.79,0.348],[0.826,0.381],[0.858,0.408],[0.854,0.439],[0.832,0.484],[0.816,0.487],[0.776,0.512],[0.734,0.535],[0.71,0.572],[0.717,0.613],[0.748,0.652],[0.789,0.681],[0.825,0.727],[0.876,0.733],[0.846,0.721],[0.812,0.746],[0.774,0.777],[0.739,0.818],[0.741,0.864],[0.7,0.922],[0.763,0.906],[0.72,0.888],[0.729,0.847],[0.707,0.81],[0.714,0.766],[0.747,0.724],[0.781,0.688],[0.802,0.653],[0.859,0.637],[0.867,0.636],[0.845,0.635],[0.806,0.619],[0.763,0.587],[0.732,0.548],[0.719,0.51],[0.677,0.497],[0.626,0.499],[0.577,0.505],[0.559,0.485],[0.544,0.48],[0.542,0.452],[0.555,0.412],[0.566,0.362],[0.568,0.318],[0.553,0.295],[0.529,0.285],[0.495,0.298],[0.458,0.324],[0.413,0.349],[0.385,0.342],[0.391,0.394],[0.41,0.428],[0.447,0.426],[0.484,0.396],[0.522,0.352],[0.597,0.387],[0.58,0.435],[0.554,0.353],[0.592,0.333],[0.625,0.331],[0.637,0.358],[0.627,0.405],[0.605,0.455],[0.599,0.501],[0.591,0.54],[0.596,0.559],[0.609,0.561],[0.656,0.573],[0.689,0.563],[0.73,0.573],[0.761,0.617]],"apo":[[0.361,0.429],[0.398,0.408],[0.452,0.377],[0.494,0.371],[0.571,0.37],[0.588,0.305],[0.603,0.295],[0.63,0.31],[0.698,0.286],[0.713,0.248],[0.708,0.203],[0.682,0.162],[0.632,0.133],[0.582,0.125],[0.524,0.142],[0.491,0.134],[0.488,0.196],[0.475,0.205],[0.464,0.196],[0.451,0.159],[0.434,0.112],[0.411,0.069],[0.381,0.04],[0.346,0.03],[0.308,0.046],[0.278,0.085],[0.247,0.134],[0.205,0.168],[0.165,0.147],[0.139,0.103],[0.115,0.096],[0.085,0.101],[0.078,0.12],[0.083,0.141],[0.112,0.124],[0.143,0.089],[0.175,0.106],[0.174,0.14],[0.231,0.15],[0.204,0.188],[0.139,0.196],[0.092,0.187],[0.073,0.169],[0.084,0.161],[0.071,0.136],[0.098,0.139],[0.134,0.154],[0.167,0.196],[0.172,0.246],[0.155,0.294],[0.111,0.319],[0.077,0.361],[0.048,0.433],[0.051,0.487],[0.091,0.48],[0.114,0.45],[0.119,0.405],[0.101,0.358],[0.077,0.316],[0.056,0.289],[0.074,0.264],[0.029,0.281],[0.04,0.307],[0.079,0.307],[0.13,0.295],[0.174,0.266],[0.2,0.219],[0.191,0.173],[0.233,0.158],[0.274,0.131],[0.308,0.156],[0.346,0.193],[0.364,0.224],[0.362,0.233],[0.358,0.266],[0.361,0.264],[0.383,0.225],[0.413,0.179],[0.454,0.156],[0.5,0.163],[0.555,0.148],[0.581,0.188],[0.601,0.234],[0.614,0.267],[0.633,0.282],[0.689,0.332],[0.644,0.282],[0.649,0.234],[0.664,0.18],[0.687,0.136],[0.725,0.119],[0.775,0.126],[0.812,0.157],[0.869,0.193],[0.841,0.222],[0.812,0.244],[0.775,0.213],[0.744,0.17],[0.707,0.144],[0.664,0.13],[0.628,0.15],[0.601,0.189],[0.579,0.232],[0.565,0.261],[0.559,0.282],[0.548,0.271],[0.53,0.235],[0.522,0.295],[0.493,0.321],[0.54,0.289],[0.551,0.201],[0.542,0.162],[0.526,0.182],[0.5,0.172],[0.455,0.141],[0.412,0.146],[0.374,0.178],[0.333,0.204],[0.301,0.255],[0.301,0.263],[0.31,0.27],[0.308,0.252],[0.291,0.221],[0.272,0.216],[0.284,0.237],[0.268,0.278],[0.242,0.323],[0.217,0.366],[0.202,0.402],[0.209,0.426],[0.24,0.433],[0.28,0.434],[0.333,0.435],[0.38,0.437],[0.413,0.452],[0.438,0.487],[0.506,0.495],[0.534,0.525],[0.537,0.571],[0.501,0.638],[0.48,0.591],[0.538,0.641],[0.58,0.625],[0.595,0.581],[0.574,0.543],[0.558,0.484],[0.522,0.499],[0.445,0.536],[0.428,0.585],[0.4,0.631],[0.391,0.652],[0.392,0.66],[0.422,0.653],[0.462,0.674],[0.434,0.745],[0.414,0.673],[0.391,0.654],[0.363,0.617],[0.348,0.58],[0.329,0.572],[0.308,0.585],[0.272,0.611],[0.239,0.648],[0.209,0.686],[0.174,0.702],[0.148,0.7],[0.129,0.664],[0.113,0.624],[0.111,0.572],[0.109,0.531],[0.101,0.492],[0.082,0.415],[0.105,0.377],[0.134,0.346],[0.169,0.347],[0.215,0.376],[0.265,0.393],[0.281,0.434],[0.288,0.478],[0.299,0.497],[0.31,0.499],[0.342,0.564],[0.396,0.559],[0.464,0.523],[0.45,0.478],[0.416,0.436],[0.393,0.383],[0.367,0.371],[0.33,0.371],[0.298,0.408],[0.265,0.448],[0.24,0.476],[0.228,0.487],[0.222,0.459],[0.223,0.454],[0.202,0.43],[0.161,0.398],[0.128,0.365],[0.096,0.341],[0.059,0.342],[0.019,0.373],[0.01,0.325],[0.006,0.322],[0.011,0.335],[0.029,0.361],[0.049,0.4],[0.066,0.448],[0.068,0.494],[0.042,0.522],[0.009,0.578],[0.067,0.545],[0.111,0.528],[0.145,0.517],[0.165,0.526],[0.178,0.546],[0.182,0.584],[0.192,0.629],[0.198,0.679],[0.213,0.715],[0.248,0.739],[0.279,0.721],[0.306,0.691],[0.339,0.64],[0.368,0.616],[0.428,0.61],[0.482,0.558],[0.442,0.594],[0.427,0.584],[0.382,0.597],[0.347,0.607],[0.339,0.596],[0.352,0.574],[0.366,0.535],[0.387,0.488],[0.389,0.444],[0.383,0.409],[0.351,0.38],[0.348,0.294],[0.358,0.328],[0.325,0.282],[0.305,0.365],[0.245,0.38],[0.205,0.375],[0.173,0.367],[0.161,0.345],[0.173,0.309],[0.195,0.265],[0.19,0.181],[0.244,0.216],[0.275,0.194],[0.292,0.18],[0.313,0.147],[0.343,0.11],[0.371,0.067],[0.407,0.044],[0.445,0.039],[0.479,0.064],[0.502,0.108],[0.517,0.15],[0.531,0.2],[0.541,0.219],[0.555,0.226],[0.591,0.27],[0.575,0.238],[0.581,0.167],[0.624,0.133],[0.677,0.126],[0.717,0.153],[0.746,0.194],[0.773,0.237],[0.812,0.275],[0.82,0.319],[0.817,0.335],[0.809,0.321],[0.82,0.29],[0.847,0.249],[0.893,0.222],[0.94,0.233],[0.996,0.27],[0.992,0.259],[0.987,0.225],[0.949,0.204],[0.902,0.188],[0.855,0.198],[0.804,0.226],[0.764,0.251],[0.751,0.273],[0.737,0.296],[0.701,0.309],[0.646,0.37],[0.649,0.425],[0.665,0.473],[0.733,0.507],[0.761,0.46],[0.787,0.439],[0.831,0.425],[0.859,0.401],[0.876,0.379],[0.876,0.335],[0.855,0.289],[0.82,0.247],[0.838,0.233],[0.842,0.226],[0.823,0.19],[0.77,0.177],[0.745,0.18],[0.73,0.189],[0.736,0.172],[0.75,0.144],[0.776,0.105],[0.783,0.04],[0.838,0.002],[0.79,0.012],[0.837,0.049],[0.834,0.068],[0.85,0.11],[0.828,0.152],[0.798,0.195],[0.776,0.219],[0.775,0.234],[0.749,0.248],[0.741,0.269],[0.756,0.309],[0.788,0.348],[0.822,0.381],[0.853,0.407],[0.849,0.44],[0.831,0.485],[0.815,0.489],[0.775,0.509],[0.736,0.532],[0.715,0.568],[0.717,0.61],[0.743,0.652],[0.785,0.683],[0.819,0.729],[0.875,0.73],[0.842,0.723],[0.813,0.747],[0.767,0.777],[0.735,0.818],[0.744,0.865],[0.69,0.914],[0.759,0.914],[0.718,0.888],[0.719,0.848],[0.698,0.809],[0.71,0.764],[0.746,0.726],[0.777,0.691],[0.797,0.654],[0.856,0.64],[0.864,0.64],[0.843,0.637],[0.804,0.621],[0.765,0.589],[0.732,0.551],[0.722,0.514],[0.676,0.5],[0.626,0.5],[0.578,0.506],[0.564,0.485],[0.545,0.479],[0.54,0.453],[0.553,0.411],[0.562,0.362],[0.567,0.32],[0.553,0.297],[0.527,0.286],[0.495,0.295],[0.46,0.327],[0.413,0.352],[0.388,0.344],[0.392,0.394],[0.41,0.43],[0.448,0.427],[0.485,0.393],[0.523,0.353],[0.597,0.388],[0.582,0.434],[0.553,0.354],[0.59,0.333],[0.623,0.332],[0.632,0.358],[0.626,0.403],[0.605,0.456],[0.599,0.5],[0.59,0.536],[0.594,0.56],[0.613,0.563],[0.653,0.569],[0.7,0.563]]},"method":"X-ray","resolution":2.81,"rna_type":"Group II intron ribozyme","rna_group":"Catalytic (ribozyme)","num_chains":1,"total_rna_len":394,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["junction","internal loop","hairpin loop","bulge","stem","single strand"],"rmsd":0.83,"host_chain_rmsd":0.83,"pocket_rmsd":2.04,"lig_bsa":308.5,"ligand_burial":0.515,"tm_score":0.989,"rg_apo":36.17,"rg_holo":36.32,"rg_delta":0.15,"bp_rewire_src":"dssr","bp_formed":11,"bp_broken":14,"bp_conserved":175,"bp_formed_wc":1,"bp_broken_wc":2,"bp_conserved_wc":118,"maxd":7.5,"water":2,"hbonds":1,"mw":568.2,"logp":4.13,"thumb_img":true,"thumb_v":1785389626,"apo_alts":[{"pdb":"4E8M","rmsd":0.79,"host_chain_rmsd":0.79,"apo_chain":"A","apo_len":394,"identity":100,"global_identity":100,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.995,"rg_delta":-0.07,"pocket_rmsd":1.81,"maxd":7.0,"bp_formed":4,"bp_broken":14,"bp_conserved":182},{"pdb":"4E8N","rmsd":0.79,"host_chain_rmsd":0.79,"apo_chain":"A","apo_len":392,"identity":100,"global_identity":100,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.99,"rg_delta":0.08,"pocket_rmsd":1.77,"maxd":7.2,"bp_formed":6,"bp_broken":12,"bp_conserved":180},{"pdb":"4E8Q","rmsd":0.79,"host_chain_rmsd":0.79,"apo_chain":"A","apo_len":392,"identity":100,"global_identity":100,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.99,"rg_delta":0.06,"pocket_rmsd":1.82,"maxd":6.6,"bp_formed":7,"bp_broken":9,"bp_conserved":179},{"pdb":"4E8R","rmsd":0.93,"host_chain_rmsd":0.93,"apo_chain":"A","apo_len":392,"identity":100,"global_identity":100,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.988,"rg_delta":0.03,"pocket_rmsd":1.89,"maxd":7.1,"bp_formed":6,"bp_broken":15,"bp_conserved":180},{"pdb":"4E8V","rmsd":1.28,"host_chain_rmsd":1.28,"apo_chain":"A","apo_len":388,"identity":100,"global_identity":100,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.969,"rg_delta":-0.26,"pocket_rmsd":1.34,"maxd":9.3,"bp_formed":19,"bp_broken":15,"bp_conserved":167},{"pdb":"4FAU","rmsd":0.93,"host_chain_rmsd":0.93,"apo_chain":"A","apo_len":392,"identity":100,"global_identity":98,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.987,"rg_delta":-0.06,"pocket_rmsd":2.8,"maxd":10.7,"bp_formed":7,"bp_broken":14,"bp_conserved":179},{"pdb":"4FAX","rmsd":1.11,"host_chain_rmsd":1.11,"apo_chain":"A","apo_len":391,"identity":100,"global_identity":99,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.984,"rg_delta":0.07,"pocket_rmsd":2.86,"maxd":7.5,"bp_formed":17,"bp_broken":14,"bp_conserved":169}],"n_apo_copies":0},{"id":"8OLZ_VTE_A_CB_453_pocket","title":"8OLZ (VTE) vs 8RUH (apo)","struct_title":"Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+, 5'-exon, and intronistat B after 2h30 soaking","holo_pdb":"8OLZ","ligand":"VTE","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"453","apo_pdb":"8RUH","apo_chain":"A","holo_len":390,"apo_len":390,"pocket_size":18,"thumb":{"holo":[[0.597,0.378],[0.594,0.304],[0.607,0.29],[0.631,0.307],[0.7,0.287],[0.712,0.249],[0.708,0.204],[0.679,0.167],[0.634,0.137],[0.582,0.131],[0.522,0.146],[0.492,0.138],[0.486,0.195],[0.472,0.211],[0.464,0.194],[0.448,0.161],[0.434,0.114],[0.413,0.067],[0.383,0.037],[0.346,0.031],[0.307,0.047],[0.281,0.085],[0.245,0.138],[0.204,0.171],[0.162,0.145],[0.139,0.102],[0.118,0.094],[0.088,0.103],[0.077,0.126],[0.084,0.143],[0.116,0.126],[0.147,0.09],[0.18,0.105],[0.177,0.136],[0.234,0.149],[0.205,0.19],[0.138,0.197],[0.098,0.19],[0.077,0.173],[0.086,0.162],[0.068,0.139],[0.102,0.137],[0.138,0.158],[0.164,0.196],[0.172,0.246],[0.155,0.299],[0.111,0.319],[0.078,0.36],[0.05,0.425],[0.052,0.482],[0.084,0.474],[0.113,0.447],[0.113,0.401],[0.094,0.359],[0.068,0.314],[0.053,0.289],[0.074,0.266],[0.029,0.281],[0.042,0.302],[0.082,0.304],[0.135,0.293],[0.179,0.263],[0.202,0.216],[0.192,0.167],[0.233,0.161],[0.276,0.132],[0.312,0.156],[0.345,0.193],[0.365,0.223],[0.368,0.232],[0.363,0.271],[0.367,0.266],[0.389,0.229],[0.418,0.185],[0.456,0.157],[0.501,0.167],[0.556,0.149],[0.583,0.188],[0.604,0.232],[0.622,0.269],[0.635,0.28],[0.699,0.319],[0.65,0.277],[0.656,0.23],[0.672,0.176],[0.687,0.133],[0.724,0.118],[0.768,0.121],[0.81,0.151],[0.869,0.181],[0.842,0.213],[0.815,0.239],[0.775,0.209],[0.744,0.168],[0.706,0.142],[0.664,0.133],[0.631,0.152],[0.606,0.188],[0.586,0.233],[0.572,0.266],[0.566,0.285],[0.554,0.267],[0.535,0.236],[0.523,0.296],[0.5,0.321],[0.539,0.291],[0.552,0.202],[0.542,0.164],[0.525,0.184],[0.501,0.172],[0.46,0.147],[0.414,0.153],[0.374,0.18],[0.341,0.209],[0.306,0.259],[0.303,0.264],[0.315,0.273],[0.309,0.252],[0.293,0.219],[0.275,0.217],[0.287,0.234],[0.276,0.279],[0.246,0.324],[0.223,0.365],[0.212,0.403],[0.216,0.426],[0.245,0.432],[0.289,0.433],[0.339,0.434],[0.383,0.439],[0.417,0.452],[0.444,0.486],[0.509,0.496],[0.534,0.525],[0.533,0.572],[0.497,0.636],[0.485,0.588],[0.536,0.639],[0.581,0.627],[0.596,0.582],[0.575,0.544],[0.557,0.49],[0.523,0.501],[0.45,0.534],[0.425,0.587],[0.401,0.629],[0.395,0.654],[0.39,0.655],[0.416,0.654],[0.458,0.67],[0.434,0.738],[0.409,0.672],[0.387,0.653],[0.361,0.611],[0.345,0.578],[0.324,0.571],[0.299,0.575],[0.264,0.602],[0.233,0.648],[0.195,0.675],[0.178,0.687],[0.149,0.692],[0.132,0.657],[0.108,0.618],[0.114,0.568],[0.117,0.528],[0.099,0.488],[0.082,0.411],[0.107,0.373],[0.137,0.342],[0.175,0.345],[0.22,0.373],[0.271,0.39],[0.284,0.433],[0.29,0.473],[0.298,0.497],[0.31,0.501],[0.337,0.562],[0.387,0.555],[0.46,0.526],[0.449,0.486],[0.426,0.437],[0.403,0.397],[0.369,0.372],[0.334,0.38],[0.295,0.405],[0.257,0.441],[0.235,0.473],[0.231,0.477],[0.226,0.457],[0.229,0.454],[0.209,0.429],[0.169,0.4],[0.139,0.362],[0.104,0.339],[0.064,0.34],[0.023,0.369],[0.011,0.321],[0.0,0.322],[0.001,0.336],[0.021,0.362],[0.046,0.402],[0.06,0.455],[0.067,0.5],[0.035,0.523],[0.024,0.596],[0.068,0.544],[0.115,0.522],[0.151,0.521],[0.171,0.529],[0.175,0.539],[0.186,0.582],[0.197,0.623],[0.206,0.676],[0.214,0.713],[0.242,0.736],[0.275,0.713],[0.295,0.682],[0.331,0.639],[0.364,0.611],[0.423,0.606],[0.483,0.558],[0.441,0.589],[0.426,0.581],[0.383,0.595],[0.344,0.6],[0.34,0.591],[0.352,0.571],[0.365,0.535],[0.387,0.487],[0.395,0.438],[0.388,0.405],[0.351,0.38],[0.353,0.289],[0.357,0.328],[0.327,0.278],[0.306,0.363],[0.252,0.378],[0.21,0.374],[0.177,0.368],[0.166,0.344],[0.181,0.309],[0.197,0.263],[0.189,0.178],[0.247,0.216],[0.277,0.189],[0.296,0.179],[0.315,0.146],[0.344,0.113],[0.376,0.07],[0.413,0.042],[0.449,0.041],[0.476,0.071],[0.499,0.109],[0.519,0.157],[0.53,0.202],[0.541,0.221],[0.556,0.227],[0.592,0.269],[0.577,0.239],[0.58,0.168],[0.622,0.135],[0.673,0.129],[0.716,0.155],[0.746,0.192],[0.772,0.235],[0.809,0.27],[0.823,0.313],[0.823,0.332],[0.814,0.312],[0.823,0.284],[0.851,0.244],[0.891,0.212],[0.939,0.222],[0.999,0.253],[0.994,0.242],[0.985,0.215],[0.942,0.191],[0.898,0.181],[0.85,0.191],[0.805,0.219],[0.765,0.247],[0.753,0.269],[0.737,0.294],[0.702,0.31],[0.651,0.376],[0.648,0.424],[0.661,0.47],[0.732,0.507],[0.753,0.459],[0.78,0.446],[0.827,0.42],[0.854,0.396],[0.879,0.369],[0.881,0.33],[0.853,0.289],[0.821,0.246],[0.832,0.234],[0.841,0.227],[0.819,0.191],[0.768,0.18],[0.743,0.183],[0.724,0.188],[0.725,0.181],[0.745,0.143],[0.773,0.094],[0.773,0.032],[0.834,0.011],[0.794,0.0],[0.856,0.043],[0.835,0.058],[0.844,0.107],[0.822,0.157],[0.798,0.206],[0.771,0.23],[0.771,0.237],[0.746,0.252],[0.739,0.27],[0.754,0.306],[0.789,0.345],[0.825,0.379],[0.856,0.406],[0.853,0.434],[0.831,0.479],[0.811,0.483],[0.771,0.507],[0.728,0.53],[0.71,0.565],[0.714,0.606],[0.746,0.647],[0.783,0.677],[0.822,0.719],[0.876,0.723],[0.844,0.709],[0.812,0.734],[0.767,0.763],[0.737,0.804],[0.74,0.85],[0.706,0.907],[0.768,0.894],[0.726,0.877],[0.73,0.834],[0.697,0.795],[0.716,0.751],[0.743,0.711],[0.777,0.677],[0.798,0.641],[0.856,0.629],[0.861,0.627],[0.842,0.628],[0.807,0.614],[0.765,0.585],[0.73,0.544],[0.723,0.504],[0.676,0.493],[0.627,0.494],[0.581,0.502],[0.561,0.483],[0.543,0.477],[0.541,0.451],[0.555,0.416],[0.566,0.369],[0.568,0.323],[0.548,0.299],[0.526,0.284],[0.496,0.299],[0.461,0.323],[0.413,0.349],[0.392,0.343],[0.396,0.393],[0.412,0.426],[0.45,0.425],[0.487,0.393],[0.524,0.352],[0.598,0.385],[0.583,0.433],[0.556,0.352],[0.592,0.334],[0.622,0.333],[0.638,0.361],[0.627,0.406],[0.603,0.456],[0.598,0.499],[0.591,0.542],[0.591,0.555],[0.612,0.558],[0.666,0.568],[0.689,0.56],[0.727,0.577],[0.781,0.637]],"apo":[[0.61,0.391],[0.594,0.301],[0.605,0.289],[0.629,0.306],[0.697,0.285],[0.713,0.244],[0.708,0.201],[0.68,0.164],[0.637,0.134],[0.587,0.126],[0.52,0.142],[0.491,0.137],[0.488,0.194],[0.475,0.211],[0.467,0.192],[0.452,0.164],[0.435,0.117],[0.414,0.069],[0.38,0.04],[0.343,0.031],[0.305,0.043],[0.277,0.087],[0.247,0.132],[0.198,0.172],[0.158,0.146],[0.13,0.099],[0.105,0.096],[0.079,0.104],[0.074,0.132],[0.084,0.151],[0.113,0.131],[0.143,0.095],[0.174,0.109],[0.176,0.142],[0.23,0.15],[0.204,0.189],[0.14,0.199],[0.092,0.194],[0.07,0.177],[0.079,0.167],[0.066,0.137],[0.091,0.142],[0.133,0.152],[0.161,0.193],[0.169,0.242],[0.157,0.293],[0.111,0.315],[0.076,0.358],[0.046,0.429],[0.045,0.485],[0.091,0.477],[0.114,0.448],[0.121,0.401],[0.1,0.356],[0.075,0.313],[0.055,0.287],[0.075,0.265],[0.027,0.28],[0.039,0.303],[0.08,0.304],[0.13,0.294],[0.17,0.262],[0.197,0.218],[0.192,0.168],[0.231,0.162],[0.27,0.132],[0.302,0.154],[0.341,0.191],[0.361,0.221],[0.361,0.238],[0.358,0.273],[0.365,0.263],[0.389,0.231],[0.416,0.178],[0.457,0.155],[0.504,0.161],[0.556,0.151],[0.585,0.187],[0.607,0.232],[0.623,0.271],[0.641,0.276],[0.698,0.325],[0.653,0.276],[0.656,0.229],[0.673,0.181],[0.697,0.128],[0.733,0.114],[0.777,0.118],[0.813,0.149],[0.874,0.186],[0.845,0.214],[0.819,0.236],[0.778,0.21],[0.748,0.165],[0.713,0.14],[0.673,0.13],[0.637,0.144],[0.609,0.187],[0.585,0.231],[0.572,0.262],[0.567,0.28],[0.551,0.265],[0.534,0.234],[0.524,0.29],[0.499,0.32],[0.544,0.287],[0.55,0.199],[0.543,0.161],[0.523,0.181],[0.502,0.169],[0.462,0.141],[0.413,0.145],[0.373,0.178],[0.331,0.2],[0.303,0.257],[0.3,0.262],[0.31,0.269],[0.304,0.248],[0.29,0.222],[0.272,0.217],[0.288,0.235],[0.278,0.272],[0.245,0.319],[0.223,0.367],[0.209,0.401],[0.214,0.423],[0.242,0.43],[0.28,0.433],[0.338,0.436],[0.384,0.439],[0.417,0.451],[0.441,0.482],[0.51,0.495],[0.535,0.522],[0.532,0.57],[0.495,0.632],[0.483,0.595],[0.534,0.641],[0.579,0.625],[0.599,0.578],[0.575,0.534],[0.557,0.483],[0.521,0.497],[0.448,0.534],[0.425,0.583],[0.404,0.623],[0.391,0.648],[0.387,0.656],[0.419,0.652],[0.458,0.672],[0.431,0.743],[0.41,0.675],[0.386,0.651],[0.363,0.611],[0.341,0.578],[0.324,0.569],[0.301,0.578],[0.259,0.607],[0.228,0.645],[0.193,0.681],[0.168,0.702],[0.148,0.696],[0.13,0.663],[0.111,0.62],[0.11,0.571],[0.109,0.526],[0.097,0.489],[0.08,0.413],[0.105,0.374],[0.134,0.344],[0.173,0.342],[0.218,0.373],[0.268,0.392],[0.281,0.432],[0.286,0.48],[0.294,0.498],[0.304,0.497],[0.338,0.564],[0.384,0.555],[0.462,0.522],[0.448,0.489],[0.424,0.435],[0.4,0.395],[0.369,0.373],[0.333,0.381],[0.289,0.407],[0.258,0.442],[0.236,0.474],[0.226,0.482],[0.221,0.459],[0.226,0.456],[0.207,0.43],[0.166,0.395],[0.131,0.364],[0.097,0.337],[0.063,0.341],[0.015,0.369],[0.012,0.323],[0.002,0.319],[0.007,0.331],[0.028,0.356],[0.049,0.399],[0.064,0.45],[0.067,0.494],[0.04,0.52],[0.018,0.584],[0.072,0.542],[0.11,0.52],[0.15,0.513],[0.164,0.521],[0.173,0.537],[0.179,0.581],[0.191,0.626],[0.2,0.678],[0.22,0.713],[0.253,0.732],[0.28,0.718],[0.3,0.687],[0.328,0.642],[0.366,0.616],[0.421,0.603],[0.485,0.559],[0.441,0.591],[0.428,0.581],[0.381,0.594],[0.345,0.598],[0.341,0.588],[0.355,0.568],[0.367,0.528],[0.385,0.479],[0.398,0.436],[0.387,0.403],[0.353,0.38],[0.352,0.292],[0.358,0.328],[0.326,0.28],[0.309,0.362],[0.247,0.377],[0.207,0.371],[0.177,0.366],[0.165,0.345],[0.177,0.308],[0.199,0.261],[0.188,0.183],[0.244,0.215],[0.274,0.191],[0.29,0.178],[0.313,0.152],[0.337,0.109],[0.371,0.069],[0.407,0.04],[0.447,0.039],[0.478,0.068],[0.499,0.106],[0.517,0.15],[0.533,0.202],[0.546,0.218],[0.553,0.223],[0.593,0.268],[0.582,0.237],[0.582,0.166],[0.62,0.135],[0.674,0.128],[0.717,0.151],[0.747,0.194],[0.773,0.233],[0.81,0.27],[0.828,0.311],[0.826,0.334],[0.814,0.314],[0.826,0.288],[0.854,0.249],[0.895,0.224],[0.947,0.233],[1.0,0.267],[0.996,0.253],[0.992,0.22],[0.951,0.203],[0.909,0.183],[0.861,0.194],[0.811,0.219],[0.767,0.246],[0.756,0.267],[0.739,0.293],[0.703,0.306],[0.663,0.373],[0.651,0.422],[0.665,0.474],[0.736,0.503],[0.754,0.456],[0.778,0.441],[0.824,0.415],[0.862,0.392],[0.879,0.373],[0.882,0.33],[0.857,0.284],[0.824,0.244],[0.835,0.232],[0.841,0.221],[0.821,0.189],[0.77,0.177],[0.743,0.18],[0.723,0.191],[0.722,0.18],[0.745,0.151],[0.772,0.103],[0.775,0.044],[0.829,0.009],[0.789,0.007],[0.823,0.039],[0.828,0.073],[0.839,0.111],[0.823,0.157],[0.792,0.199],[0.77,0.229],[0.772,0.239],[0.747,0.25],[0.74,0.269],[0.757,0.304],[0.791,0.343],[0.827,0.378],[0.855,0.404],[0.854,0.43],[0.829,0.481],[0.81,0.479],[0.77,0.506],[0.731,0.529],[0.713,0.567],[0.717,0.612],[0.748,0.652],[0.786,0.678],[0.823,0.726],[0.879,0.729],[0.849,0.719],[0.818,0.745],[0.785,0.774],[0.745,0.813],[0.752,0.86],[0.705,0.905],[0.774,0.91],[0.726,0.878],[0.736,0.839],[0.708,0.807],[0.715,0.761],[0.75,0.722],[0.779,0.687],[0.8,0.648],[0.861,0.629],[0.868,0.631],[0.85,0.629],[0.811,0.62],[0.768,0.587],[0.734,0.547],[0.726,0.513],[0.684,0.497],[0.628,0.492],[0.581,0.502],[0.564,0.482],[0.546,0.476],[0.539,0.453],[0.551,0.412],[0.561,0.364],[0.563,0.317],[0.549,0.296],[0.53,0.281],[0.493,0.294],[0.462,0.322],[0.414,0.342],[0.39,0.344],[0.395,0.395],[0.415,0.426],[0.448,0.421],[0.485,0.393],[0.522,0.35],[0.601,0.386],[0.585,0.43],[0.555,0.351],[0.592,0.33],[0.622,0.329],[0.636,0.357],[0.627,0.404],[0.608,0.458],[0.6,0.496],[0.593,0.537],[0.596,0.555],[0.613,0.559],[0.668,0.575],[0.69,0.573],[0.735,0.582],[0.785,0.639]]},"method":"X-ray","resolution":3.31,"rna_type":"Group II intron ribozyme","rna_group":"Catalytic (ribozyme)","num_chains":2,"total_rna_len":395,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["junction","internal loop","bulge","stem","single strand"],"rmsd":0.86,"host_chain_rmsd":0.86,"pocket_rmsd":0.85,"lig_bsa":230.3,"ligand_burial":0.468,"tm_score":0.992,"rg_apo":36.59,"rg_holo":36.3,"rg_delta":-0.29,"bp_rewire_src":"dssr","bp_formed":12,"bp_broken":10,"bp_conserved":180,"bp_formed_wc":1,"bp_broken_wc":2,"bp_conserved_wc":120,"maxd":3.8,"water":1,"hbonds":5,"mw":410.4,"logp":2.61,"thumb_img":true,"thumb_v":1785389626,"apo_alts":[{"pdb":"3BWP","rmsd":1.13,"host_chain_rmsd":1.13,"apo_chain":"A","apo_len":356,"identity":100,"global_identity":95,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.904,"rg_delta":-0.27,"pocket_rmsd":1.15,"maxd":7.3,"bp_formed":40,"bp_broken":16,"bp_conserved":147},{"pdb":"3EOG","rmsd":1.15,"host_chain_rmsd":1.15,"apo_chain":"A","apo_len":388,"identity":100,"global_identity":95,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.983,"rg_delta":-0.2,"pocket_rmsd":1.22,"maxd":6.2,"bp_formed":28,"bp_broken":24,"bp_conserved":164},{"pdb":"3EOH","rmsd":1.15,"host_chain_rmsd":1.15,"apo_chain":"A","apo_len":381,"identity":100,"global_identity":95,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.968,"rg_delta":-0.34,"pocket_rmsd":1.17,"maxd":6.7,"bp_formed":25,"bp_broken":20,"bp_conserved":167},{"pdb":"3G78","rmsd":0.82,"host_chain_rmsd":0.82,"apo_chain":"A","apo_len":389,"identity":100,"global_identity":95,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.992,"rg_delta":-0.29,"pocket_rmsd":0.69,"maxd":8.8,"bp_formed":10,"bp_broken":16,"bp_conserved":182},{"pdb":"3IGI","rmsd":0.68,"host_chain_rmsd":0.68,"apo_chain":"A","apo_len":388,"identity":100,"global_identity":95,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.99,"rg_delta":-0.31,"pocket_rmsd":1.3,"maxd":3.3,"bp_formed":14,"bp_broken":16,"bp_conserved":178},{"pdb":"4E8K","rmsd":0.82,"host_chain_rmsd":0.82,"apo_chain":"A","apo_len":387,"identity":100,"global_identity":99,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.985,"rg_delta":-0.31,"pocket_rmsd":0.78,"maxd":3.4,"bp_formed":14,"bp_broken":12,"bp_conserved":178},{"pdb":"4E8M","rmsd":0.77,"host_chain_rmsd":0.77,"apo_chain":"A","apo_len":394,"identity":100,"global_identity":99,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.993,"rg_delta":-0.25,"pocket_rmsd":0.77,"maxd":2.3,"bp_formed":7,"bp_broken":16,"bp_conserved":180},{"pdb":"4E8N","rmsd":0.87,"host_chain_rmsd":0.87,"apo_chain":"A","apo_len":392,"identity":100,"global_identity":99,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.986,"rg_delta":-0.11,"pocket_rmsd":0.83,"maxd":3.1,"bp_formed":8,"bp_broken":13,"bp_conserved":179},{"pdb":"4E8Q","rmsd":0.92,"host_chain_rmsd":0.92,"apo_chain":"A","apo_len":392,"identity":100,"global_identity":99,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.985,"rg_delta":-0.13,"pocket_rmsd":0.82,"maxd":2.6,"bp_formed":10,"bp_broken":11,"bp_conserved":177},{"pdb":"4E8R","rmsd":1.0,"host_chain_rmsd":1.0,"apo_chain":"A","apo_len":392,"identity":100,"global_identity":99,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.984,"rg_delta":-0.16,"pocket_rmsd":0.85,"maxd":3.9,"bp_formed":9,"bp_broken":17,"bp_conserved":178},{"pdb":"4E8T","rmsd":0.73,"host_chain_rmsd":0.73,"apo_chain":"A","apo_len":387,"identity":100,"global_identity":99,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.987,"rg_delta":-0.28,"pocket_rmsd":0.74,"maxd":3.3,"bp_formed":9,"bp_broken":11,"bp_conserved":183},{"pdb":"4E8V","rmsd":1.16,"host_chain_rmsd":1.16,"apo_chain":"A","apo_len":388,"identity":100,"global_identity":99,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.982,"rg_delta":-0.45,"pocket_rmsd":0.72,"maxd":9.7,"bp_formed":19,"bp_broken":14,"bp_conserved":168},{"pdb":"4FAQ","rmsd":0.95,"host_chain_rmsd":0.95,"apo_chain":"A","apo_len":395,"identity":100,"global_identity":99,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.989,"rg_delta":-0.23,"pocket_rmsd":0.82,"maxd":7.9,"bp_formed":8,"bp_broken":16,"bp_conserved":179},{"pdb":"4FAR","rmsd":0.81,"host_chain_rmsd":0.81,"apo_chain":"A","apo_len":389,"identity":100,"global_identity":100,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.988,"rg_delta":-0.19,"pocket_rmsd":0.66,"maxd":3.5,"bp_formed":9,"bp_broken":11,"bp_conserved":183},{"pdb":"4FAU","rmsd":1.18,"host_chain_rmsd":1.18,"apo_chain":"A","apo_len":392,"identity":100,"global_identity":98,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.983,"rg_delta":-0.25,"pocket_rmsd":3.63,"maxd":13.4,"bp_formed":10,"bp_broken":16,"bp_conserved":177},{"pdb":"4FAW","rmsd":0.76,"host_chain_rmsd":0.76,"apo_chain":"A","apo_len":390,"identity":100,"global_identity":99,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.994,"rg_delta":-0.34,"pocket_rmsd":0.5,"maxd":3.7,"bp_formed":9,"bp_broken":12,"bp_conserved":183},{"pdb":"4FAX","rmsd":1.26,"host_chain_rmsd":1.26,"apo_chain":"A","apo_len":391,"identity":100,"global_identity":99,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.977,"rg_delta":-0.11,"pocket_rmsd":2.04,"maxd":6.0,"bp_formed":17,"bp_broken":13,"bp_conserved":170},{"pdb":"5J01","rmsd":3.06,"host_chain_rmsd":3.06,"apo_chain":"A","apo_len":414,"identity":98,"global_identity":91,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.936,"rg_delta":0.37,"pocket_rmsd":1.64,"maxd":23.0,"bp_formed":8,"bp_broken":26,"bp_conserved":179},{"pdb":"8OLW","rmsd":0.95,"host_chain_rmsd":0.95,"apo_chain":"A","apo_len":395,"identity":100,"global_identity":99,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.99,"rg_delta":-0.1,"pocket_rmsd":1.5,"maxd":8.1,"bp_formed":13,"bp_broken":19,"bp_conserved":174},{"pdb":"8OLY","rmsd":0.61,"host_chain_rmsd":0.61,"apo_chain":"A","apo_len":389,"identity":100,"global_identity":100,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.992,"rg_delta":-0.14,"pocket_rmsd":0.58,"maxd":3.6,"bp_formed":10,"bp_broken":10,"bp_conserved":182},{"pdb":"8RUL","rmsd":0.97,"host_chain_rmsd":0.97,"apo_chain":"A","apo_len":392,"identity":100,"global_identity":99,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.984,"rg_delta":-0.05,"pocket_rmsd":1.05,"maxd":3.4,"bp_formed":14,"bp_broken":16,"bp_conserved":173},{"pdb":"9QU6","rmsd":3.03,"host_chain_rmsd":3.03,"apo_chain":"A","apo_len":312,"identity":100,"global_identity":99,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.787,"rg_delta":-0.28,"pocket_rmsd":1.3,"maxd":33.1,"bp_formed":71,"bp_broken":34,"bp_conserved":121},{"pdb":"9QU7","rmsd":1.19,"host_chain_rmsd":1.19,"apo_chain":"A","apo_len":297,"identity":100,"global_identity":99,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.754,"rg_delta":-0.22,"pocket_rmsd":0.63,"maxd":13.7,"bp_formed":65,"bp_broken":25,"bp_conserved":127}],"n_apo_copies":0},{"id":"8OM0_GDE_A_B_401_pocket","title":"8OM0 (GDE) vs 8RUL (apo)","struct_title":"Structure of Oceanobacillus iheyensis group II intron in the presence of Na+, Mg2+ and intronistat B","holo_pdb":"8OM0","ligand":"GDE","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"401","apo_pdb":"8RUL","apo_chain":"A","holo_len":390,"apo_len":392,"pocket_size":13,"thumb":{"holo":[[0.58,0.387],[0.588,0.305],[0.604,0.289],[0.628,0.31],[0.698,0.288],[0.714,0.249],[0.708,0.203],[0.684,0.16],[0.637,0.134],[0.586,0.122],[0.525,0.141],[0.493,0.128],[0.484,0.19],[0.472,0.206],[0.462,0.193],[0.45,0.154],[0.432,0.107],[0.411,0.06],[0.38,0.032],[0.345,0.027],[0.307,0.045],[0.275,0.081],[0.247,0.133],[0.206,0.166],[0.158,0.148],[0.135,0.103],[0.112,0.09],[0.084,0.098],[0.076,0.116],[0.083,0.133],[0.113,0.119],[0.15,0.081],[0.18,0.1],[0.176,0.133],[0.232,0.147],[0.203,0.187],[0.136,0.197],[0.088,0.188],[0.069,0.172],[0.082,0.159],[0.068,0.135],[0.102,0.134],[0.133,0.157],[0.164,0.198],[0.172,0.246],[0.155,0.299],[0.109,0.32],[0.073,0.36],[0.042,0.433],[0.041,0.487],[0.08,0.479],[0.108,0.45],[0.11,0.404],[0.095,0.359],[0.076,0.319],[0.055,0.29],[0.071,0.267],[0.026,0.282],[0.039,0.303],[0.076,0.306],[0.128,0.299],[0.175,0.268],[0.199,0.218],[0.192,0.169],[0.236,0.15],[0.274,0.128],[0.305,0.151],[0.348,0.187],[0.368,0.218],[0.371,0.231],[0.365,0.265],[0.365,0.265],[0.386,0.226],[0.41,0.182],[0.449,0.155],[0.497,0.163],[0.554,0.149],[0.584,0.188],[0.6,0.239],[0.617,0.273],[0.631,0.284],[0.693,0.332],[0.641,0.286],[0.645,0.239],[0.661,0.183],[0.683,0.136],[0.724,0.12],[0.77,0.123],[0.812,0.158],[0.866,0.195],[0.839,0.223],[0.812,0.247],[0.772,0.217],[0.743,0.175],[0.705,0.146],[0.659,0.131],[0.624,0.153],[0.596,0.192],[0.575,0.236],[0.557,0.265],[0.557,0.283],[0.547,0.269],[0.53,0.235],[0.518,0.288],[0.495,0.318],[0.536,0.288],[0.554,0.2],[0.54,0.155],[0.524,0.177],[0.499,0.168],[0.454,0.145],[0.411,0.146],[0.374,0.175],[0.339,0.199],[0.298,0.253],[0.301,0.262],[0.313,0.268],[0.31,0.254],[0.294,0.222],[0.272,0.215],[0.283,0.234],[0.271,0.277],[0.246,0.323],[0.221,0.365],[0.204,0.406],[0.213,0.431],[0.24,0.435],[0.285,0.434],[0.339,0.434],[0.379,0.439],[0.416,0.45],[0.441,0.487],[0.508,0.497],[0.536,0.525],[0.538,0.571],[0.496,0.635],[0.479,0.591],[0.536,0.646],[0.581,0.631],[0.596,0.581],[0.58,0.543],[0.563,0.49],[0.528,0.5],[0.446,0.537],[0.423,0.59],[0.406,0.631],[0.391,0.651],[0.394,0.663],[0.425,0.657],[0.463,0.678],[0.433,0.747],[0.413,0.672],[0.39,0.659],[0.365,0.619],[0.345,0.572],[0.327,0.565],[0.304,0.58],[0.267,0.606],[0.235,0.647],[0.199,0.685],[0.172,0.698],[0.143,0.692],[0.114,0.67],[0.099,0.628],[0.108,0.576],[0.112,0.536],[0.09,0.492],[0.081,0.418],[0.107,0.378],[0.133,0.343],[0.172,0.346],[0.219,0.376],[0.263,0.393],[0.286,0.43],[0.295,0.474],[0.306,0.499],[0.318,0.498],[0.346,0.568],[0.393,0.563],[0.463,0.518],[0.445,0.478],[0.416,0.436],[0.394,0.389],[0.361,0.369],[0.324,0.377],[0.285,0.404],[0.259,0.445],[0.238,0.474],[0.228,0.485],[0.226,0.46],[0.228,0.457],[0.202,0.43],[0.162,0.4],[0.13,0.368],[0.098,0.339],[0.06,0.34],[0.019,0.37],[0.005,0.325],[0.0,0.329],[0.008,0.341],[0.018,0.366],[0.043,0.402],[0.062,0.448],[0.067,0.497],[0.036,0.524],[0.021,0.597],[0.067,0.546],[0.108,0.521],[0.147,0.521],[0.17,0.528],[0.18,0.55],[0.179,0.589],[0.194,0.637],[0.201,0.684],[0.214,0.724],[0.236,0.74],[0.275,0.722],[0.304,0.686],[0.332,0.641],[0.372,0.614],[0.434,0.611],[0.491,0.562],[0.444,0.598],[0.425,0.584],[0.381,0.594],[0.349,0.607],[0.34,0.598],[0.351,0.578],[0.37,0.542],[0.387,0.492],[0.387,0.449],[0.382,0.41],[0.345,0.373],[0.352,0.3],[0.358,0.323],[0.328,0.281],[0.303,0.366],[0.244,0.379],[0.204,0.373],[0.17,0.366],[0.161,0.342],[0.177,0.307],[0.198,0.261],[0.188,0.176],[0.245,0.212],[0.276,0.188],[0.294,0.177],[0.317,0.143],[0.347,0.108],[0.377,0.063],[0.411,0.036],[0.448,0.033],[0.478,0.06],[0.499,0.105],[0.52,0.151],[0.532,0.197],[0.544,0.219],[0.559,0.224],[0.587,0.269],[0.579,0.241],[0.582,0.167],[0.622,0.13],[0.676,0.125],[0.719,0.152],[0.75,0.195],[0.776,0.238],[0.817,0.275],[0.826,0.317],[0.822,0.342],[0.81,0.318],[0.821,0.294],[0.847,0.255],[0.89,0.228],[0.943,0.239],[1.0,0.27],[0.992,0.262],[0.984,0.229],[0.949,0.202],[0.904,0.185],[0.854,0.198],[0.799,0.225],[0.764,0.256],[0.753,0.272],[0.736,0.296],[0.702,0.31],[0.645,0.373],[0.653,0.422],[0.661,0.469],[0.735,0.507],[0.758,0.46],[0.784,0.442],[0.833,0.422],[0.865,0.398],[0.882,0.377],[0.881,0.339],[0.861,0.288],[0.824,0.246],[0.842,0.232],[0.846,0.226],[0.825,0.192],[0.775,0.176],[0.748,0.176],[0.736,0.179],[0.732,0.166],[0.747,0.138],[0.783,0.093],[0.782,0.024],[0.845,0.001],[0.8,0.0],[0.848,0.029],[0.849,0.059],[0.857,0.106],[0.832,0.153],[0.804,0.198],[0.78,0.223],[0.779,0.235],[0.755,0.25],[0.744,0.271],[0.756,0.309],[0.787,0.349],[0.824,0.384],[0.856,0.415],[0.854,0.443],[0.832,0.48],[0.817,0.491],[0.779,0.513],[0.735,0.531],[0.711,0.567],[0.715,0.614],[0.744,0.657],[0.779,0.687],[0.82,0.736],[0.874,0.736],[0.841,0.73],[0.814,0.758],[0.766,0.783],[0.733,0.819],[0.737,0.868],[0.693,0.921],[0.758,0.913],[0.716,0.891],[0.729,0.845],[0.703,0.806],[0.711,0.766],[0.743,0.724],[0.764,0.684],[0.797,0.647],[0.859,0.633],[0.869,0.636],[0.845,0.636],[0.801,0.623],[0.765,0.589],[0.735,0.552],[0.721,0.502],[0.676,0.495],[0.624,0.497],[0.571,0.499],[0.56,0.479],[0.544,0.48],[0.541,0.454],[0.556,0.413],[0.566,0.363],[0.568,0.316],[0.549,0.295],[0.526,0.283],[0.493,0.296],[0.455,0.317],[0.409,0.35],[0.385,0.336],[0.39,0.389],[0.41,0.421],[0.451,0.425],[0.492,0.4],[0.523,0.358],[0.598,0.388],[0.58,0.433],[0.554,0.352],[0.592,0.334],[0.623,0.331],[0.634,0.361],[0.628,0.406],[0.608,0.459],[0.604,0.503],[0.593,0.539],[0.596,0.561],[0.612,0.563],[0.66,0.578],[0.69,0.569],[0.733,0.582],[0.773,0.637]],"apo":[[0.361,0.429],[0.397,0.408],[0.452,0.377],[0.494,0.371],[0.571,0.37],[0.588,0.305],[0.603,0.295],[0.63,0.31],[0.699,0.286],[0.714,0.248],[0.71,0.202],[0.683,0.161],[0.633,0.132],[0.583,0.123],[0.525,0.141],[0.491,0.133],[0.488,0.195],[0.476,0.204],[0.464,0.194],[0.452,0.157],[0.435,0.111],[0.412,0.067],[0.382,0.038],[0.347,0.028],[0.308,0.044],[0.278,0.083],[0.247,0.132],[0.205,0.166],[0.164,0.145],[0.138,0.101],[0.114,0.094],[0.084,0.098],[0.077,0.118],[0.082,0.139],[0.111,0.121],[0.143,0.086],[0.174,0.104],[0.174,0.137],[0.23,0.148],[0.203,0.186],[0.138,0.194],[0.091,0.185],[0.071,0.167],[0.083,0.159],[0.07,0.135],[0.097,0.137],[0.132,0.153],[0.165,0.195],[0.171,0.245],[0.154,0.294],[0.11,0.318],[0.075,0.361],[0.046,0.432],[0.049,0.487],[0.089,0.48],[0.112,0.45],[0.117,0.405],[0.099,0.358],[0.076,0.316],[0.054,0.288],[0.072,0.264],[0.027,0.28],[0.038,0.306],[0.077,0.306],[0.128,0.294],[0.173,0.265],[0.199,0.218],[0.19,0.171],[0.232,0.156],[0.274,0.129],[0.308,0.155],[0.346,0.192],[0.364,0.223],[0.362,0.232],[0.358,0.265],[0.361,0.263],[0.383,0.225],[0.413,0.179],[0.454,0.156],[0.501,0.162],[0.555,0.147],[0.581,0.188],[0.602,0.234],[0.615,0.267],[0.634,0.282],[0.69,0.333],[0.645,0.283],[0.649,0.235],[0.665,0.181],[0.688,0.136],[0.726,0.119],[0.776,0.125],[0.814,0.157],[0.871,0.193],[0.842,0.222],[0.813,0.244],[0.776,0.213],[0.745,0.17],[0.708,0.143],[0.664,0.13],[0.629,0.149],[0.602,0.189],[0.579,0.233],[0.565,0.262],[0.559,0.282],[0.548,0.271],[0.531,0.235],[0.522,0.295],[0.493,0.321],[0.541,0.289],[0.552,0.2],[0.542,0.161],[0.526,0.181],[0.5,0.171],[0.455,0.14],[0.412,0.145],[0.374,0.177],[0.332,0.203],[0.301,0.254],[0.3,0.262],[0.31,0.269],[0.308,0.251],[0.291,0.22],[0.272,0.214],[0.284,0.236],[0.267,0.276],[0.242,0.322],[0.217,0.365],[0.201,0.401],[0.208,0.426],[0.239,0.432],[0.279,0.434],[0.332,0.435],[0.38,0.437],[0.413,0.452],[0.438,0.487],[0.506,0.495],[0.534,0.525],[0.537,0.572],[0.501,0.639],[0.48,0.592],[0.538,0.642],[0.58,0.626],[0.596,0.581],[0.574,0.544],[0.558,0.484],[0.523,0.499],[0.445,0.536],[0.428,0.585],[0.4,0.631],[0.391,0.653],[0.392,0.66],[0.421,0.654],[0.462,0.675],[0.434,0.746],[0.414,0.674],[0.39,0.655],[0.363,0.618],[0.347,0.581],[0.328,0.572],[0.307,0.586],[0.271,0.613],[0.237,0.649],[0.207,0.687],[0.172,0.703],[0.146,0.701],[0.127,0.665],[0.111,0.625],[0.11,0.572],[0.108,0.531],[0.099,0.492],[0.08,0.415],[0.104,0.376],[0.132,0.345],[0.168,0.346],[0.214,0.375],[0.264,0.392],[0.28,0.434],[0.287,0.479],[0.298,0.497],[0.309,0.5],[0.341,0.565],[0.395,0.559],[0.464,0.523],[0.45,0.478],[0.416,0.436],[0.393,0.383],[0.367,0.371],[0.329,0.371],[0.297,0.409],[0.264,0.448],[0.238,0.476],[0.227,0.487],[0.221,0.459],[0.221,0.454],[0.201,0.429],[0.16,0.397],[0.126,0.364],[0.094,0.34],[0.057,0.341],[0.018,0.373],[0.008,0.324],[0.004,0.322],[0.009,0.335],[0.027,0.361],[0.047,0.4],[0.064,0.448],[0.066,0.494],[0.04,0.522],[0.006,0.579],[0.065,0.545],[0.109,0.528],[0.143,0.518],[0.164,0.526],[0.176,0.547],[0.181,0.584],[0.19,0.629],[0.196,0.68],[0.212,0.716],[0.246,0.741],[0.278,0.722],[0.305,0.692],[0.338,0.641],[0.368,0.617],[0.427,0.611],[0.482,0.559],[0.442,0.595],[0.427,0.585],[0.381,0.597],[0.346,0.608],[0.338,0.596],[0.351,0.574],[0.366,0.534],[0.387,0.488],[0.389,0.443],[0.383,0.408],[0.35,0.379],[0.348,0.293],[0.357,0.327],[0.324,0.281],[0.304,0.364],[0.245,0.379],[0.204,0.375],[0.172,0.366],[0.16,0.344],[0.173,0.308],[0.195,0.263],[0.19,0.178],[0.244,0.215],[0.274,0.192],[0.292,0.178],[0.313,0.145],[0.343,0.109],[0.371,0.066],[0.407,0.042],[0.445,0.037],[0.48,0.062],[0.502,0.106],[0.518,0.149],[0.531,0.198],[0.542,0.218],[0.556,0.225],[0.592,0.269],[0.576,0.237],[0.582,0.166],[0.625,0.132],[0.679,0.125],[0.718,0.152],[0.748,0.194],[0.774,0.237],[0.814,0.275],[0.822,0.319],[0.819,0.336],[0.811,0.321],[0.821,0.29],[0.849,0.25],[0.894,0.223],[0.942,0.234],[0.998,0.271],[0.994,0.259],[0.989,0.225],[0.951,0.205],[0.904,0.188],[0.856,0.198],[0.805,0.226],[0.765,0.251],[0.752,0.273],[0.738,0.296],[0.702,0.309],[0.647,0.37],[0.65,0.426],[0.666,0.473],[0.734,0.508],[0.762,0.46],[0.788,0.439],[0.833,0.426],[0.861,0.401],[0.878,0.379],[0.878,0.336],[0.856,0.289],[0.822,0.246],[0.84,0.232],[0.844,0.225],[0.825,0.189],[0.772,0.176],[0.747,0.179],[0.731,0.188],[0.738,0.171],[0.752,0.143],[0.778,0.103],[0.785,0.038],[0.841,0.0],[0.792,0.01],[0.839,0.048],[0.836,0.067],[0.852,0.108],[0.83,0.15],[0.8,0.194],[0.778,0.218],[0.777,0.233],[0.75,0.248],[0.742,0.268],[0.757,0.309],[0.789,0.348],[0.823,0.381],[0.855,0.407],[0.851,0.44],[0.833,0.486],[0.817,0.49],[0.776,0.509],[0.737,0.533],[0.716,0.568],[0.718,0.611],[0.744,0.653],[0.786,0.685],[0.82,0.731],[0.876,0.732],[0.843,0.724],[0.814,0.748],[0.768,0.778],[0.736,0.819],[0.745,0.867],[0.69,0.917],[0.76,0.916],[0.719,0.89],[0.719,0.85],[0.699,0.81],[0.711,0.766],[0.747,0.728],[0.778,0.692],[0.798,0.656],[0.858,0.641],[0.865,0.642],[0.844,0.638],[0.805,0.623],[0.766,0.59],[0.733,0.552],[0.722,0.515],[0.676,0.501],[0.627,0.501],[0.578,0.506],[0.565,0.485],[0.546,0.479],[0.54,0.453],[0.554,0.411],[0.563,0.361],[0.568,0.319],[0.553,0.297],[0.528,0.286],[0.495,0.294],[0.46,0.326],[0.413,0.352],[0.387,0.343],[0.392,0.394],[0.41,0.43],[0.448,0.427],[0.485,0.393],[0.523,0.353],[0.597,0.388],[0.583,0.434],[0.553,0.354],[0.591,0.332],[0.624,0.332],[0.633,0.358],[0.627,0.402],[0.606,0.456],[0.599,0.501],[0.59,0.537],[0.595,0.56],[0.613,0.564],[0.653,0.57],[0.7,0.565]]},"method":"X-ray","resolution":3.61,"rna_type":"Group II intron ribozyme","rna_group":"Catalytic (ribozyme)","num_chains":1,"total_rna_len":390,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["junction","internal loop","hairpin loop","bulge","stem","single strand"],"rmsd":0.81,"host_chain_rmsd":0.81,"pocket_rmsd":0.78,"lig_bsa":143.7,"ligand_burial":0.453,"tm_score":0.988,"rg_apo":36.32,"rg_holo":36.3,"rg_delta":-0.02,"bp_rewire_src":"dssr","bp_formed":16,"bp_broken":18,"bp_conserved":171,"bp_formed_wc":1,"bp_broken_wc":1,"bp_conserved_wc":114,"maxd":3.7,"water":0,"hbonds":1,"mw":170.1,"logp":0.5,"thumb_img":true,"thumb_v":1785389626,"apo_alts":[{"pdb":"3BWP","rmsd":1.37,"host_chain_rmsd":1.37,"apo_chain":"A","apo_len":356,"identity":100,"global_identity":94,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.896,"rg_delta":-0.25,"pocket_rmsd":1.56,"maxd":6.4,"bp_formed":45,"bp_broken":21,"bp_conserved":142},{"pdb":"4E8M","rmsd":0.67,"host_chain_rmsd":0.67,"apo_chain":"A","apo_len":394,"identity":100,"global_identity":100,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.994,"rg_delta":-0.22,"pocket_rmsd":0.62,"maxd":2.1,"bp_formed":8,"bp_broken":17,"bp_conserved":179},{"pdb":"4E8N","rmsd":0.76,"host_chain_rmsd":0.76,"apo_chain":"A","apo_len":392,"identity":100,"global_identity":100,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.987,"rg_delta":-0.08,"pocket_rmsd":0.76,"maxd":2.4,"bp_formed":12,"bp_broken":17,"bp_conserved":175},{"pdb":"4E8Q","rmsd":0.81,"host_chain_rmsd":0.81,"apo_chain":"A","apo_len":392,"identity":100,"global_identity":100,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.987,"rg_delta":-0.1,"pocket_rmsd":0.8,"maxd":2.5,"bp_formed":13,"bp_broken":14,"bp_conserved":174},{"pdb":"4E8R","rmsd":0.88,"host_chain_rmsd":0.88,"apo_chain":"A","apo_len":392,"identity":100,"global_identity":100,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.986,"rg_delta":-0.13,"pocket_rmsd":0.74,"maxd":3.7,"bp_formed":12,"bp_broken":20,"bp_conserved":175},{"pdb":"4E8V","rmsd":1.39,"host_chain_rmsd":1.39,"apo_chain":"A","apo_len":388,"identity":100,"global_identity":100,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.973,"rg_delta":-0.42,"pocket_rmsd":1.35,"maxd":8.8,"bp_formed":22,"bp_broken":17,"bp_conserved":165},{"pdb":"4FAQ","rmsd":1.18,"host_chain_rmsd":1.18,"apo_chain":"A","apo_len":395,"identity":100,"global_identity":99,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.981,"rg_delta":-0.2,"pocket_rmsd":1.17,"maxd":7.9,"bp_formed":13,"bp_broken":21,"bp_conserved":174},{"pdb":"4FAU","rmsd":1.17,"host_chain_rmsd":1.17,"apo_chain":"A","apo_len":392,"identity":100,"global_identity":98,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.981,"rg_delta":-0.22,"pocket_rmsd":1.47,"maxd":11.5,"bp_formed":15,"bp_broken":21,"bp_conserved":172},{"pdb":"4FAX","rmsd":1.0,"host_chain_rmsd":1.0,"apo_chain":"A","apo_len":391,"identity":100,"global_identity":99,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.983,"rg_delta":-0.09,"pocket_rmsd":2.23,"maxd":5.4,"bp_formed":17,"bp_broken":13,"bp_conserved":170},{"pdb":"5J01","rmsd":3.07,"host_chain_rmsd":3.07,"apo_chain":"A","apo_len":414,"identity":98,"global_identity":91,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.935,"rg_delta":0.4,"pocket_rmsd":1.74,"maxd":22.1,"bp_formed":18,"bp_broken":36,"bp_conserved":169},{"pdb":"8OLW","rmsd":1.17,"host_chain_rmsd":1.17,"apo_chain":"A","apo_len":395,"identity":100,"global_identity":99,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.982,"rg_delta":-0.07,"pocket_rmsd":1.24,"maxd":8.2,"bp_formed":14,"bp_broken":20,"bp_conserved":173}],"n_apo_copies":0},{"id":"8R63_Y53_B_C_101_pocket","title":"8R63 (Y53) vs 6HMI (apo)","struct_title":"Solution structure of branaplam bound to the RNA duplex formed upon 5'-splice site recognition","holo_pdb":"8R63","ligand":"Y53","holo_chain":"B","holo_rna_chain":"B","lig_auth_chain":"B","nearest_rna_chain":"B","lig_resseq":"101","apo_pdb":"6HMI","apo_chain":"B","holo_len":11,"apo_len":11,"pocket_size":10,"thumb":{"holo":[[0.0,0.044],[0.058,0.155],[0.149,0.263],[0.258,0.374],[0.388,0.474],[0.539,0.529],[0.698,0.501],[0.839,0.407],[0.926,0.261],[0.972,0.111],[1.0,0.0]],"apo":[[0.089,0.079],[0.156,0.161],[0.171,0.203],[0.256,0.379],[0.385,0.489],[0.537,0.533],[0.69,0.502],[0.823,0.398],[0.898,0.25],[0.916,0.106],[0.907,0.018]]},"method":"NMR","resolution":null,"rna_type":"A-form double helix","rna_group":"Structural","num_chains":2,"total_rna_len":20,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["internal loop","bulge","stem"],"rmsd":2.55,"host_chain_rmsd":2.0,"pocket_rmsd":3.36,"lig_bsa":308.9,"ligand_burial":0.511,"tm_score":0.432,"rg_apo":12.24,"rg_holo":13.46,"rg_delta":1.22,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":0,"bp_conserved":10,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":7,"maxd":8.6,"water":0,"hbonds":4,"mw":393.5,"logp":3.93,"thumb_img":true,"thumb_v":1785451631,"apo_alts":[{"pdb":"5OR0","rmsd":1.74,"host_chain_rmsd":1.74,"apo_chain":"B","apo_len":11,"identity":100,"global_identity":100,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.358,"rg_delta":-0.84,"pocket_rmsd":2.47,"maxd":9.3,"bp_formed":1,"bp_broken":0,"bp_conserved":9}],"n_apo_copies":0},{"id":"8R8P_YB3_B_C_101_pocket","title":"8R8P (YB3) vs 6HMI (apo)","struct_title":"Solution structure of SMN-CX bound to the RNA helix formed upon SMN2 exon7 5'-splice site recognition","holo_pdb":"8R8P","ligand":"YB3","holo_chain":"B","holo_rna_chain":"B","lig_auth_chain":"B","nearest_rna_chain":"A","lig_resseq":"101","apo_pdb":"6HMI","apo_chain":"B","holo_len":11,"apo_len":11,"pocket_size":9,"thumb":{"holo":[[1.0,0.523],[0.977,0.398],[0.905,0.271],[0.789,0.155],[0.644,0.062],[0.487,0.01],[0.322,0.037],[0.174,0.134],[0.078,0.283],[0.028,0.436],[0.0,0.542]],"apo":[[0.945,0.481],[0.877,0.391],[0.864,0.344],[0.778,0.161],[0.645,0.046],[0.487,0.0],[0.328,0.032],[0.187,0.138],[0.108,0.291],[0.088,0.439],[0.098,0.527]]},"method":"NMR","resolution":null,"rna_type":"A-form double helix","rna_group":"Structural","num_chains":2,"total_rna_len":20,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["internal loop","bulge","stem"],"rmsd":1.88,"host_chain_rmsd":1.93,"pocket_rmsd":2.08,"lig_bsa":316.7,"ligand_burial":0.554,"tm_score":0.39,"rg_apo":12.24,"rg_holo":13.41,"rg_delta":1.17,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":0,"bp_conserved":10,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":7,"maxd":3.3,"water":0,"hbonds":4,"mw":376.4,"logp":3.14,"thumb_img":true,"thumb_v":1785488734,"apo_alts":[{"pdb":"5OR0","rmsd":1.68,"host_chain_rmsd":1.68,"apo_chain":"B","apo_len":11,"identity":100,"global_identity":100,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.358,"rg_delta":-0.89,"pocket_rmsd":1.98,"maxd":9.2,"bp_formed":1,"bp_broken":0,"bp_conserved":9}],"n_apo_copies":0},{"id":"8RUI_VTE_A_JA_435_pocket","title":"8RUI (VTE) vs 8RUL (apo)","struct_title":"Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+, 5'-exon, and intronistat B after 1h soaking","holo_pdb":"8RUI","ligand":"VTE","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"435","apo_pdb":"8RUL","apo_chain":"A","holo_len":390,"apo_len":392,"pocket_size":15,"thumb":{"holo":[[0.582,0.384],[0.589,0.307],[0.604,0.29],[0.629,0.31],[0.7,0.285],[0.714,0.249],[0.708,0.205],[0.682,0.163],[0.636,0.136],[0.586,0.129],[0.523,0.142],[0.491,0.132],[0.486,0.196],[0.471,0.209],[0.464,0.193],[0.451,0.156],[0.434,0.109],[0.411,0.063],[0.381,0.035],[0.341,0.024],[0.304,0.042],[0.275,0.081],[0.24,0.131],[0.198,0.169],[0.153,0.145],[0.129,0.099],[0.103,0.095],[0.077,0.102],[0.069,0.125],[0.079,0.14],[0.111,0.121],[0.144,0.085],[0.172,0.099],[0.171,0.134],[0.226,0.146],[0.202,0.183],[0.133,0.197],[0.088,0.188],[0.068,0.173],[0.076,0.161],[0.06,0.136],[0.092,0.139],[0.131,0.152],[0.158,0.193],[0.167,0.242],[0.15,0.291],[0.108,0.315],[0.073,0.358],[0.044,0.43],[0.044,0.483],[0.085,0.476],[0.11,0.448],[0.109,0.401],[0.095,0.355],[0.069,0.31],[0.049,0.286],[0.068,0.263],[0.023,0.279],[0.036,0.303],[0.073,0.305],[0.124,0.294],[0.169,0.264],[0.195,0.214],[0.185,0.164],[0.226,0.155],[0.266,0.128],[0.3,0.152],[0.341,0.188],[0.356,0.221],[0.359,0.234],[0.356,0.266],[0.361,0.263],[0.385,0.227],[0.413,0.185],[0.452,0.156],[0.501,0.166],[0.554,0.149],[0.583,0.186],[0.602,0.232],[0.619,0.27],[0.634,0.283],[0.701,0.32],[0.649,0.28],[0.652,0.228],[0.668,0.174],[0.69,0.132],[0.727,0.114],[0.774,0.118],[0.81,0.154],[0.869,0.186],[0.841,0.216],[0.815,0.239],[0.777,0.209],[0.748,0.167],[0.708,0.139],[0.666,0.126],[0.633,0.148],[0.606,0.188],[0.584,0.231],[0.569,0.263],[0.562,0.284],[0.551,0.265],[0.534,0.237],[0.523,0.292],[0.496,0.318],[0.54,0.291],[0.55,0.2],[0.543,0.16],[0.525,0.182],[0.501,0.172],[0.455,0.14],[0.414,0.151],[0.373,0.175],[0.331,0.201],[0.301,0.254],[0.299,0.263],[0.307,0.268],[0.303,0.248],[0.286,0.218],[0.269,0.214],[0.285,0.231],[0.269,0.269],[0.245,0.318],[0.218,0.359],[0.205,0.397],[0.21,0.423],[0.239,0.428],[0.281,0.431],[0.331,0.435],[0.377,0.435],[0.414,0.449],[0.437,0.482],[0.505,0.493],[0.533,0.524],[0.531,0.571],[0.496,0.633],[0.479,0.588],[0.535,0.642],[0.575,0.626],[0.594,0.579],[0.573,0.54],[0.555,0.485],[0.52,0.497],[0.444,0.53],[0.419,0.586],[0.4,0.627],[0.39,0.643],[0.387,0.656],[0.414,0.652],[0.454,0.671],[0.429,0.746],[0.409,0.669],[0.384,0.653],[0.358,0.613],[0.342,0.577],[0.324,0.565],[0.303,0.577],[0.268,0.599],[0.238,0.642],[0.197,0.677],[0.169,0.695],[0.145,0.692],[0.117,0.666],[0.102,0.624],[0.102,0.573],[0.105,0.53],[0.091,0.493],[0.077,0.414],[0.101,0.373],[0.129,0.342],[0.164,0.347],[0.212,0.371],[0.262,0.391],[0.277,0.431],[0.283,0.478],[0.292,0.496],[0.303,0.493],[0.34,0.56],[0.388,0.556],[0.46,0.52],[0.445,0.478],[0.417,0.433],[0.398,0.392],[0.363,0.37],[0.324,0.369],[0.285,0.399],[0.254,0.441],[0.229,0.474],[0.222,0.482],[0.219,0.457],[0.221,0.451],[0.201,0.427],[0.161,0.393],[0.127,0.364],[0.094,0.338],[0.055,0.337],[0.015,0.371],[0.006,0.321],[0.0,0.318],[0.003,0.331],[0.022,0.355],[0.044,0.395],[0.061,0.446],[0.065,0.495],[0.034,0.523],[0.006,0.584],[0.065,0.54],[0.109,0.52],[0.142,0.513],[0.159,0.522],[0.169,0.546],[0.171,0.588],[0.191,0.631],[0.194,0.679],[0.205,0.72],[0.235,0.736],[0.273,0.718],[0.295,0.677],[0.331,0.63],[0.369,0.613],[0.426,0.601],[0.487,0.559],[0.439,0.59],[0.42,0.579],[0.376,0.594],[0.344,0.601],[0.336,0.593],[0.35,0.571],[0.363,0.534],[0.383,0.483],[0.387,0.438],[0.38,0.402],[0.35,0.378],[0.347,0.287],[0.351,0.325],[0.32,0.276],[0.303,0.362],[0.243,0.376],[0.202,0.372],[0.169,0.365],[0.162,0.342],[0.175,0.305],[0.196,0.261],[0.183,0.176],[0.245,0.21],[0.272,0.187],[0.288,0.177],[0.309,0.144],[0.336,0.106],[0.367,0.063],[0.408,0.036],[0.446,0.036],[0.473,0.066],[0.497,0.103],[0.516,0.148],[0.529,0.196],[0.542,0.216],[0.556,0.227],[0.589,0.27],[0.575,0.238],[0.581,0.167],[0.621,0.131],[0.677,0.126],[0.717,0.152],[0.748,0.193],[0.772,0.236],[0.811,0.272],[0.823,0.314],[0.821,0.334],[0.814,0.315],[0.821,0.285],[0.849,0.247],[0.891,0.22],[0.939,0.23],[1.0,0.264],[0.995,0.253],[0.989,0.223],[0.949,0.202],[0.903,0.185],[0.855,0.196],[0.809,0.22],[0.767,0.246],[0.755,0.269],[0.738,0.296],[0.701,0.309],[0.648,0.368],[0.649,0.423],[0.662,0.469],[0.734,0.505],[0.757,0.454],[0.781,0.446],[0.828,0.421],[0.861,0.398],[0.88,0.376],[0.88,0.336],[0.857,0.286],[0.821,0.242],[0.836,0.233],[0.844,0.227],[0.822,0.191],[0.771,0.178],[0.743,0.181],[0.726,0.19],[0.729,0.182],[0.748,0.148],[0.777,0.094],[0.779,0.031],[0.839,0.011],[0.795,0.0],[0.844,0.027],[0.836,0.064],[0.845,0.103],[0.821,0.15],[0.792,0.198],[0.774,0.222],[0.774,0.238],[0.75,0.247],[0.742,0.269],[0.756,0.308],[0.791,0.345],[0.827,0.38],[0.855,0.408],[0.851,0.439],[0.829,0.483],[0.813,0.485],[0.773,0.508],[0.732,0.53],[0.713,0.564],[0.71,0.611],[0.742,0.649],[0.783,0.679],[0.82,0.729],[0.872,0.73],[0.841,0.721],[0.808,0.746],[0.766,0.776],[0.735,0.818],[0.739,0.86],[0.695,0.916],[0.758,0.91],[0.716,0.883],[0.727,0.844],[0.703,0.808],[0.712,0.764],[0.746,0.724],[0.774,0.688],[0.797,0.649],[0.856,0.634],[0.864,0.635],[0.841,0.634],[0.801,0.621],[0.766,0.588],[0.73,0.542],[0.719,0.509],[0.678,0.496],[0.623,0.499],[0.576,0.504],[0.559,0.483],[0.541,0.476],[0.539,0.449],[0.552,0.413],[0.562,0.362],[0.565,0.316],[0.55,0.294],[0.526,0.281],[0.493,0.297],[0.459,0.319],[0.41,0.345],[0.382,0.343],[0.389,0.392],[0.409,0.424],[0.446,0.423],[0.484,0.392],[0.521,0.35],[0.597,0.386],[0.581,0.433],[0.555,0.351],[0.59,0.334],[0.62,0.329],[0.635,0.358],[0.623,0.397],[0.601,0.452],[0.596,0.498],[0.589,0.538],[0.591,0.556],[0.61,0.56],[0.659,0.572],[0.684,0.567],[0.723,0.582],[0.757,0.623]],"apo":[[0.359,0.426],[0.396,0.405],[0.45,0.374],[0.492,0.369],[0.569,0.367],[0.586,0.302],[0.601,0.293],[0.628,0.308],[0.696,0.284],[0.711,0.246],[0.707,0.201],[0.68,0.16],[0.63,0.131],[0.58,0.123],[0.523,0.14],[0.489,0.132],[0.486,0.193],[0.473,0.203],[0.462,0.193],[0.449,0.157],[0.432,0.11],[0.409,0.067],[0.38,0.038],[0.345,0.028],[0.306,0.043],[0.276,0.082],[0.245,0.131],[0.203,0.165],[0.164,0.144],[0.138,0.1],[0.113,0.093],[0.084,0.098],[0.076,0.117],[0.081,0.138],[0.11,0.121],[0.141,0.086],[0.173,0.104],[0.172,0.137],[0.229,0.147],[0.202,0.185],[0.137,0.193],[0.09,0.184],[0.071,0.166],[0.082,0.158],[0.069,0.133],[0.097,0.136],[0.132,0.151],[0.165,0.193],[0.17,0.243],[0.153,0.291],[0.109,0.315],[0.075,0.358],[0.046,0.429],[0.049,0.483],[0.089,0.476],[0.112,0.446],[0.117,0.401],[0.099,0.354],[0.076,0.313],[0.054,0.286],[0.072,0.261],[0.027,0.278],[0.038,0.303],[0.077,0.304],[0.128,0.292],[0.173,0.263],[0.198,0.216],[0.189,0.17],[0.231,0.155],[0.272,0.128],[0.306,0.154],[0.344,0.191],[0.363,0.221],[0.36,0.23],[0.356,0.263],[0.36,0.261],[0.381,0.222],[0.411,0.176],[0.453,0.154],[0.499,0.16],[0.553,0.146],[0.579,0.186],[0.6,0.231],[0.613,0.264],[0.632,0.279],[0.687,0.329],[0.643,0.28],[0.647,0.232],[0.663,0.178],[0.686,0.134],[0.724,0.117],[0.774,0.123],[0.811,0.155],[0.868,0.19],[0.839,0.219],[0.81,0.242],[0.773,0.211],[0.742,0.168],[0.705,0.141],[0.662,0.128],[0.627,0.147],[0.6,0.186],[0.577,0.23],[0.563,0.259],[0.557,0.279],[0.546,0.269],[0.529,0.233],[0.52,0.293],[0.491,0.319],[0.538,0.287],[0.549,0.199],[0.54,0.159],[0.524,0.18],[0.498,0.169],[0.453,0.138],[0.41,0.143],[0.373,0.175],[0.331,0.201],[0.3,0.252],[0.299,0.26],[0.308,0.267],[0.306,0.249],[0.289,0.218],[0.27,0.213],[0.282,0.235],[0.265,0.275],[0.24,0.32],[0.215,0.364],[0.199,0.4],[0.207,0.424],[0.237,0.43],[0.278,0.432],[0.331,0.432],[0.377,0.435],[0.411,0.449],[0.435,0.485],[0.504,0.493],[0.532,0.523],[0.534,0.569],[0.499,0.636],[0.477,0.589],[0.535,0.639],[0.577,0.623],[0.593,0.579],[0.571,0.541],[0.555,0.482],[0.52,0.497],[0.442,0.534],[0.425,0.583],[0.397,0.629],[0.389,0.65],[0.389,0.657],[0.419,0.651],[0.46,0.672],[0.431,0.742],[0.412,0.67],[0.388,0.651],[0.361,0.615],[0.346,0.577],[0.327,0.569],[0.306,0.582],[0.27,0.608],[0.236,0.644],[0.206,0.683],[0.171,0.699],[0.145,0.696],[0.126,0.661],[0.11,0.621],[0.109,0.569],[0.107,0.528],[0.099,0.489],[0.08,0.412],[0.103,0.374],[0.132,0.343],[0.167,0.344],[0.213,0.373],[0.263,0.39],[0.279,0.432],[0.286,0.476],[0.296,0.494],[0.308,0.496],[0.34,0.561],[0.394,0.556],[0.462,0.52],[0.448,0.475],[0.414,0.433],[0.391,0.38],[0.365,0.369],[0.328,0.368],[0.296,0.405],[0.263,0.445],[0.237,0.473],[0.226,0.484],[0.22,0.456],[0.22,0.452],[0.199,0.427],[0.159,0.395],[0.125,0.362],[0.093,0.338],[0.057,0.339],[0.017,0.37],[0.008,0.321],[0.005,0.319],[0.01,0.332],[0.027,0.357],[0.047,0.396],[0.064,0.444],[0.066,0.49],[0.04,0.518],[0.007,0.575],[0.065,0.541],[0.108,0.524],[0.143,0.514],[0.163,0.523],[0.175,0.543],[0.179,0.581],[0.189,0.626],[0.195,0.676],[0.21,0.712],[0.245,0.736],[0.277,0.718],[0.304,0.688],[0.337,0.637],[0.366,0.613],[0.425,0.608],[0.48,0.555],[0.44,0.592],[0.425,0.582],[0.379,0.594],[0.344,0.605],[0.336,0.594],[0.349,0.572],[0.364,0.532],[0.384,0.486],[0.386,0.442],[0.381,0.406],[0.348,0.378],[0.346,0.291],[0.356,0.325],[0.323,0.28],[0.303,0.362],[0.243,0.377],[0.202,0.373],[0.171,0.364],[0.159,0.342],[0.171,0.307],[0.193,0.262],[0.188,0.178],[0.242,0.214],[0.272,0.191],[0.29,0.177],[0.311,0.145],[0.342,0.108],[0.37,0.065],[0.405,0.042],[0.443,0.037],[0.477,0.062],[0.5,0.106],[0.515,0.148],[0.529,0.198],[0.539,0.216],[0.553,0.223],[0.589,0.268],[0.574,0.236],[0.58,0.165],[0.622,0.13],[0.676,0.124],[0.715,0.151],[0.745,0.192],[0.771,0.235],[0.81,0.273],[0.818,0.317],[0.815,0.334],[0.808,0.319],[0.818,0.288],[0.846,0.247],[0.891,0.22],[0.938,0.231],[0.994,0.268],[0.99,0.257],[0.985,0.223],[0.947,0.203],[0.901,0.186],[0.853,0.196],[0.802,0.224],[0.763,0.249],[0.749,0.271],[0.735,0.294],[0.699,0.307],[0.644,0.368],[0.647,0.423],[0.663,0.471],[0.731,0.505],[0.759,0.458],[0.784,0.437],[0.829,0.424],[0.856,0.399],[0.874,0.377],[0.874,0.334],[0.853,0.287],[0.818,0.245],[0.836,0.231],[0.84,0.224],[0.821,0.188],[0.768,0.175],[0.744,0.178],[0.728,0.187],[0.734,0.17],[0.748,0.143],[0.774,0.103],[0.781,0.038],[0.837,0.001],[0.788,0.01],[0.835,0.048],[0.832,0.067],[0.848,0.108],[0.826,0.15],[0.796,0.194],[0.774,0.218],[0.773,0.232],[0.747,0.246],[0.739,0.267],[0.754,0.307],[0.786,0.346],[0.82,0.379],[0.851,0.405],[0.847,0.438],[0.829,0.484],[0.813,0.488],[0.772,0.507],[0.733,0.531],[0.712,0.566],[0.715,0.608],[0.741,0.65],[0.782,0.681],[0.816,0.727],[0.872,0.729],[0.839,0.721],[0.81,0.745],[0.763,0.776],[0.732,0.816],[0.74,0.863],[0.687,0.913],[0.756,0.912],[0.715,0.886],[0.716,0.847],[0.695,0.807],[0.707,0.762],[0.743,0.725],[0.774,0.689],[0.794,0.653],[0.854,0.638],[0.861,0.639],[0.84,0.635],[0.802,0.619],[0.763,0.587],[0.729,0.55],[0.719,0.512],[0.673,0.498],[0.624,0.498],[0.575,0.503],[0.562,0.482],[0.543,0.477],[0.538,0.451],[0.551,0.409],[0.56,0.36],[0.565,0.318],[0.551,0.295],[0.525,0.284],[0.493,0.292],[0.458,0.324],[0.411,0.349],[0.385,0.341],[0.39,0.392],[0.408,0.428],[0.446,0.425],[0.483,0.391],[0.521,0.351],[0.595,0.386],[0.58,0.432],[0.551,0.352],[0.588,0.33],[0.621,0.33],[0.629,0.356],[0.624,0.401],[0.602,0.454],[0.596,0.499],[0.587,0.534],[0.592,0.557],[0.611,0.56],[0.65,0.567],[0.697,0.561]]},"method":"X-ray","resolution":3.31,"rna_type":"Group II intron ribozyme","rna_group":"Catalytic (ribozyme)","num_chains":1,"total_rna_len":390,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":99,"pocket_motifs":["junction","internal loop","hairpin loop","bulge","stem","single strand"],"rmsd":0.67,"host_chain_rmsd":0.67,"pocket_rmsd":0.85,"lig_bsa":190.6,"ligand_burial":0.338,"tm_score":0.99,"rg_apo":36.32,"rg_holo":36.45,"rg_delta":0.13,"bp_rewire_src":"dssr","bp_formed":12,"bp_broken":12,"bp_conserved":177,"bp_formed_wc":1,"bp_broken_wc":1,"bp_conserved_wc":118,"maxd":3.6,"water":0,"hbonds":3,"mw":410.4,"logp":2.61,"thumb_img":true,"thumb_v":1785389627,"apo_alts":[{"pdb":"3BWP","rmsd":1.21,"host_chain_rmsd":1.21,"apo_chain":"A","apo_len":356,"identity":100,"global_identity":95,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.903,"rg_delta":-0.08,"pocket_rmsd":1.25,"maxd":7.0,"bp_formed":41,"bp_broken":15,"bp_conserved":148},{"pdb":"4E8M","rmsd":0.52,"host_chain_rmsd":0.52,"apo_chain":"A","apo_len":394,"identity":100,"global_identity":99,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.997,"rg_delta":-0.09,"pocket_rmsd":0.48,"maxd":1.6,"bp_formed":5,"bp_broken":12,"bp_conserved":184},{"pdb":"4E8N","rmsd":0.59,"host_chain_rmsd":0.59,"apo_chain":"A","apo_len":392,"identity":100,"global_identity":99,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.991,"rg_delta":0.07,"pocket_rmsd":0.51,"maxd":2.3,"bp_formed":10,"bp_broken":13,"bp_conserved":179},{"pdb":"4E8Q","rmsd":0.61,"host_chain_rmsd":0.61,"apo_chain":"A","apo_len":392,"identity":100,"global_identity":99,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.991,"rg_delta":0.05,"pocket_rmsd":0.52,"maxd":2.8,"bp_formed":10,"bp_broken":9,"bp_conserved":179},{"pdb":"4E8R","rmsd":0.72,"host_chain_rmsd":0.72,"apo_chain":"A","apo_len":392,"identity":100,"global_identity":99,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.99,"rg_delta":0.02,"pocket_rmsd":0.56,"maxd":3.5,"bp_formed":9,"bp_broken":15,"bp_conserved":180},{"pdb":"4E8V","rmsd":1.18,"host_chain_rmsd":1.18,"apo_chain":"A","apo_len":388,"identity":100,"global_identity":99,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.981,"rg_delta":-0.27,"pocket_rmsd":0.94,"maxd":8.5,"bp_formed":21,"bp_broken":14,"bp_conserved":168},{"pdb":"4FAQ","rmsd":0.93,"host_chain_rmsd":0.93,"apo_chain":"A","apo_len":395,"identity":100,"global_identity":99,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.989,"rg_delta":-0.06,"pocket_rmsd":0.74,"maxd":7.7,"bp_formed":10,"bp_broken":16,"bp_conserved":179},{"pdb":"4FAU","rmsd":0.97,"host_chain_rmsd":0.97,"apo_chain":"A","apo_len":392,"identity":100,"global_identity":98,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.988,"rg_delta":-0.07,"pocket_rmsd":3.4,"maxd":12.5,"bp_formed":11,"bp_broken":15,"bp_conserved":178},{"pdb":"4FAX","rmsd":0.97,"host_chain_rmsd":0.97,"apo_chain":"A","apo_len":391,"identity":100,"global_identity":99,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.984,"rg_delta":0.06,"pocket_rmsd":2.23,"maxd":6.1,"bp_formed":16,"bp_broken":10,"bp_conserved":173},{"pdb":"5J01","rmsd":3.14,"host_chain_rmsd":3.14,"apo_chain":"A","apo_len":414,"identity":98,"global_identity":91,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.931,"rg_delta":0.54,"pocket_rmsd":2.02,"maxd":21.8,"bp_formed":15,"bp_broken":31,"bp_conserved":174},{"pdb":"8OLW","rmsd":1.03,"host_chain_rmsd":1.03,"apo_chain":"A","apo_len":395,"identity":100,"global_identity":99,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.987,"rg_delta":0.07,"pocket_rmsd":1.4,"maxd":7.9,"bp_formed":15,"bp_broken":19,"bp_conserved":174}],"n_apo_copies":0},{"id":"8RUJ_VTR_A_B_401_pocket","title":"8RUJ (VTR) vs 8RUL (apo)","struct_title":"Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+, 5'-exon, and ARN25850 after 1h soaking","holo_pdb":"8RUJ","ligand":"VTR","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"401","apo_pdb":"8RUL","apo_chain":"A","holo_len":390,"apo_len":392,"pocket_size":16,"thumb":{"holo":[[0.579,0.383],[0.591,0.303],[0.608,0.29],[0.63,0.31],[0.701,0.284],[0.716,0.248],[0.711,0.205],[0.683,0.161],[0.635,0.136],[0.585,0.128],[0.524,0.143],[0.492,0.133],[0.488,0.194],[0.474,0.208],[0.463,0.194],[0.453,0.156],[0.437,0.11],[0.414,0.06],[0.381,0.032],[0.344,0.028],[0.305,0.044],[0.277,0.08],[0.244,0.132],[0.2,0.168],[0.158,0.143],[0.131,0.097],[0.104,0.091],[0.08,0.101],[0.074,0.125],[0.082,0.141],[0.112,0.124],[0.147,0.086],[0.176,0.101],[0.173,0.133],[0.228,0.146],[0.203,0.185],[0.136,0.196],[0.091,0.188],[0.07,0.173],[0.081,0.159],[0.065,0.136],[0.094,0.139],[0.132,0.151],[0.161,0.189],[0.17,0.242],[0.153,0.291],[0.109,0.313],[0.075,0.357],[0.046,0.427],[0.046,0.479],[0.086,0.473],[0.112,0.444],[0.112,0.396],[0.097,0.351],[0.071,0.307],[0.05,0.284],[0.069,0.262],[0.026,0.276],[0.038,0.301],[0.075,0.303],[0.13,0.291],[0.174,0.26],[0.197,0.213],[0.189,0.164],[0.23,0.156],[0.27,0.128],[0.302,0.152],[0.345,0.188],[0.36,0.217],[0.362,0.23],[0.361,0.265],[0.364,0.263],[0.385,0.225],[0.414,0.183],[0.455,0.155],[0.5,0.161],[0.556,0.148],[0.585,0.188],[0.605,0.232],[0.62,0.268],[0.634,0.282],[0.699,0.322],[0.65,0.277],[0.655,0.229],[0.67,0.175],[0.69,0.13],[0.727,0.112],[0.774,0.116],[0.814,0.151],[0.872,0.185],[0.843,0.216],[0.817,0.237],[0.779,0.208],[0.748,0.167],[0.709,0.139],[0.666,0.128],[0.633,0.148],[0.606,0.187],[0.586,0.233],[0.572,0.262],[0.563,0.286],[0.554,0.267],[0.536,0.236],[0.526,0.291],[0.499,0.317],[0.541,0.288],[0.552,0.198],[0.543,0.159],[0.526,0.18],[0.503,0.171],[0.456,0.142],[0.414,0.149],[0.372,0.176],[0.336,0.203],[0.304,0.257],[0.301,0.262],[0.308,0.265],[0.306,0.249],[0.289,0.217],[0.273,0.212],[0.285,0.231],[0.272,0.27],[0.247,0.318],[0.221,0.36],[0.206,0.398],[0.212,0.421],[0.242,0.428],[0.284,0.431],[0.334,0.432],[0.38,0.434],[0.416,0.447],[0.44,0.482],[0.508,0.493],[0.534,0.522],[0.532,0.569],[0.496,0.634],[0.48,0.59],[0.535,0.642],[0.578,0.627],[0.597,0.579],[0.576,0.539],[0.559,0.487],[0.522,0.5],[0.444,0.531],[0.421,0.583],[0.4,0.625],[0.389,0.643],[0.386,0.655],[0.416,0.651],[0.454,0.67],[0.431,0.74],[0.408,0.67],[0.386,0.651],[0.36,0.612],[0.345,0.575],[0.324,0.562],[0.3,0.576],[0.265,0.598],[0.237,0.639],[0.199,0.672],[0.171,0.695],[0.144,0.687],[0.119,0.662],[0.103,0.621],[0.108,0.57],[0.108,0.526],[0.093,0.486],[0.077,0.41],[0.103,0.372],[0.131,0.342],[0.17,0.344],[0.219,0.373],[0.265,0.39],[0.281,0.43],[0.286,0.475],[0.294,0.497],[0.307,0.493],[0.342,0.56],[0.387,0.555],[0.461,0.52],[0.444,0.477],[0.422,0.436],[0.401,0.399],[0.367,0.372],[0.328,0.374],[0.288,0.405],[0.255,0.441],[0.231,0.471],[0.225,0.481],[0.221,0.455],[0.224,0.452],[0.204,0.426],[0.165,0.393],[0.132,0.362],[0.097,0.334],[0.058,0.336],[0.019,0.368],[0.007,0.319],[0.0,0.316],[0.007,0.329],[0.024,0.356],[0.045,0.395],[0.061,0.441],[0.066,0.492],[0.037,0.52],[0.013,0.583],[0.066,0.537],[0.109,0.516],[0.144,0.512],[0.161,0.517],[0.172,0.54],[0.175,0.585],[0.189,0.628],[0.197,0.675],[0.21,0.72],[0.238,0.734],[0.277,0.715],[0.301,0.677],[0.331,0.63],[0.369,0.608],[0.429,0.603],[0.488,0.561],[0.438,0.591],[0.423,0.581],[0.378,0.592],[0.346,0.6],[0.339,0.59],[0.352,0.569],[0.369,0.532],[0.387,0.482],[0.392,0.441],[0.386,0.402],[0.352,0.377],[0.35,0.287],[0.354,0.325],[0.323,0.277],[0.306,0.363],[0.246,0.375],[0.207,0.37],[0.172,0.364],[0.163,0.341],[0.177,0.305],[0.199,0.257],[0.187,0.177],[0.246,0.212],[0.275,0.187],[0.291,0.177],[0.313,0.142],[0.34,0.105],[0.372,0.065],[0.408,0.039],[0.447,0.035],[0.477,0.064],[0.498,0.106],[0.517,0.149],[0.532,0.197],[0.543,0.218],[0.555,0.226],[0.591,0.269],[0.578,0.236],[0.581,0.166],[0.623,0.13],[0.677,0.126],[0.717,0.15],[0.749,0.194],[0.771,0.235],[0.812,0.271],[0.825,0.315],[0.823,0.332],[0.816,0.315],[0.824,0.286],[0.85,0.243],[0.894,0.215],[0.941,0.225],[1.0,0.259],[0.996,0.25],[0.988,0.217],[0.95,0.198],[0.905,0.181],[0.854,0.193],[0.809,0.219],[0.768,0.246],[0.755,0.269],[0.74,0.291],[0.704,0.31],[0.649,0.37],[0.649,0.422],[0.664,0.468],[0.733,0.506],[0.758,0.455],[0.778,0.439],[0.827,0.419],[0.861,0.399],[0.876,0.374],[0.877,0.335],[0.858,0.284],[0.821,0.243],[0.838,0.23],[0.844,0.225],[0.821,0.191],[0.771,0.176],[0.744,0.179],[0.729,0.185],[0.726,0.173],[0.745,0.144],[0.775,0.094],[0.78,0.029],[0.84,0.006],[0.795,0.0],[0.84,0.031],[0.841,0.062],[0.847,0.103],[0.821,0.154],[0.793,0.198],[0.774,0.222],[0.774,0.235],[0.749,0.247],[0.742,0.268],[0.757,0.306],[0.792,0.344],[0.827,0.379],[0.856,0.406],[0.852,0.436],[0.834,0.475],[0.814,0.483],[0.772,0.507],[0.733,0.528],[0.711,0.566],[0.715,0.612],[0.747,0.649],[0.785,0.679],[0.823,0.728],[0.877,0.727],[0.842,0.719],[0.813,0.744],[0.771,0.772],[0.736,0.816],[0.738,0.857],[0.697,0.909],[0.761,0.905],[0.719,0.882],[0.728,0.843],[0.702,0.802],[0.714,0.758],[0.748,0.718],[0.777,0.684],[0.801,0.645],[0.857,0.631],[0.866,0.63],[0.843,0.63],[0.802,0.617],[0.765,0.587],[0.733,0.545],[0.722,0.51],[0.678,0.496],[0.629,0.496],[0.576,0.503],[0.562,0.482],[0.543,0.477],[0.542,0.451],[0.556,0.411],[0.565,0.361],[0.568,0.315],[0.552,0.294],[0.53,0.28],[0.496,0.297],[0.46,0.319],[0.414,0.346],[0.387,0.342],[0.392,0.391],[0.412,0.426],[0.45,0.423],[0.486,0.392],[0.523,0.35],[0.599,0.385],[0.583,0.431],[0.556,0.35],[0.592,0.332],[0.622,0.331],[0.636,0.359],[0.626,0.402],[0.604,0.454],[0.597,0.501],[0.59,0.539],[0.595,0.557],[0.613,0.56],[0.661,0.572],[0.688,0.563],[0.729,0.575],[0.763,0.626]],"apo":[[0.362,0.424],[0.398,0.403],[0.452,0.373],[0.494,0.368],[0.57,0.366],[0.587,0.301],[0.602,0.292],[0.629,0.307],[0.697,0.283],[0.711,0.246],[0.707,0.201],[0.681,0.16],[0.631,0.131],[0.581,0.123],[0.524,0.14],[0.491,0.132],[0.488,0.193],[0.475,0.203],[0.464,0.193],[0.451,0.157],[0.434,0.111],[0.411,0.068],[0.382,0.039],[0.347,0.029],[0.309,0.044],[0.279,0.083],[0.248,0.132],[0.207,0.165],[0.167,0.144],[0.141,0.1],[0.117,0.093],[0.088,0.098],[0.08,0.118],[0.085,0.139],[0.113,0.122],[0.145,0.087],[0.176,0.105],[0.176,0.137],[0.232,0.148],[0.205,0.186],[0.14,0.193],[0.094,0.184],[0.075,0.166],[0.086,0.158],[0.073,0.133],[0.1,0.136],[0.136,0.151],[0.168,0.193],[0.174,0.242],[0.157,0.29],[0.113,0.314],[0.079,0.357],[0.05,0.428],[0.054,0.482],[0.093,0.474],[0.116,0.445],[0.12,0.4],[0.103,0.353],[0.08,0.312],[0.058,0.285],[0.076,0.26],[0.031,0.277],[0.042,0.303],[0.081,0.303],[0.131,0.292],[0.176,0.263],[0.202,0.216],[0.193,0.17],[0.234,0.155],[0.275,0.129],[0.309,0.154],[0.347,0.19],[0.365,0.221],[0.363,0.23],[0.359,0.263],[0.362,0.26],[0.384,0.222],[0.413,0.176],[0.454,0.153],[0.501,0.16],[0.555,0.146],[0.58,0.186],[0.601,0.231],[0.614,0.264],[0.633,0.278],[0.688,0.328],[0.644,0.279],[0.648,0.231],[0.663,0.177],[0.687,0.134],[0.724,0.117],[0.774,0.123],[0.811,0.155],[0.868,0.19],[0.839,0.219],[0.81,0.241],[0.773,0.21],[0.743,0.168],[0.706,0.141],[0.663,0.128],[0.628,0.147],[0.601,0.185],[0.579,0.229],[0.565,0.258],[0.559,0.278],[0.548,0.268],[0.53,0.232],[0.522,0.292],[0.493,0.318],[0.54,0.286],[0.55,0.199],[0.542,0.159],[0.525,0.18],[0.5,0.169],[0.455,0.138],[0.412,0.143],[0.375,0.175],[0.334,0.201],[0.302,0.251],[0.302,0.26],[0.311,0.266],[0.309,0.249],[0.292,0.218],[0.273,0.213],[0.285,0.235],[0.268,0.275],[0.243,0.32],[0.218,0.363],[0.203,0.399],[0.21,0.422],[0.24,0.429],[0.281,0.43],[0.333,0.431],[0.38,0.433],[0.413,0.448],[0.437,0.483],[0.505,0.491],[0.533,0.521],[0.536,0.567],[0.501,0.633],[0.479,0.587],[0.537,0.636],[0.578,0.621],[0.594,0.577],[0.572,0.539],[0.556,0.48],[0.521,0.495],[0.444,0.532],[0.427,0.581],[0.4,0.627],[0.391,0.647],[0.392,0.655],[0.421,0.648],[0.462,0.669],[0.434,0.739],[0.414,0.668],[0.391,0.649],[0.363,0.612],[0.348,0.575],[0.33,0.567],[0.309,0.58],[0.273,0.606],[0.239,0.642],[0.21,0.68],[0.175,0.696],[0.149,0.694],[0.13,0.658],[0.114,0.619],[0.113,0.567],[0.111,0.526],[0.103,0.487],[0.084,0.411],[0.107,0.373],[0.135,0.342],[0.171,0.343],[0.216,0.372],[0.266,0.389],[0.282,0.43],[0.289,0.474],[0.299,0.492],[0.311,0.494],[0.343,0.559],[0.396,0.554],[0.464,0.518],[0.45,0.474],[0.416,0.432],[0.393,0.379],[0.368,0.368],[0.33,0.367],[0.299,0.404],[0.266,0.444],[0.241,0.471],[0.229,0.482],[0.223,0.455],[0.223,0.45],[0.203,0.426],[0.162,0.394],[0.129,0.361],[0.097,0.337],[0.061,0.338],[0.022,0.369],[0.013,0.32],[0.009,0.318],[0.014,0.331],[0.031,0.356],[0.051,0.395],[0.068,0.442],[0.07,0.488],[0.044,0.516],[0.011,0.572],[0.069,0.539],[0.112,0.522],[0.146,0.512],[0.167,0.521],[0.179,0.541],[0.183,0.578],[0.193,0.623],[0.198,0.673],[0.214,0.709],[0.248,0.733],[0.28,0.715],[0.306,0.685],[0.34,0.634],[0.368,0.61],[0.427,0.605],[0.482,0.553],[0.442,0.59],[0.427,0.58],[0.382,0.592],[0.347,0.603],[0.339,0.591],[0.351,0.57],[0.366,0.53],[0.386,0.485],[0.389,0.44],[0.383,0.405],[0.351,0.376],[0.349,0.291],[0.358,0.325],[0.325,0.279],[0.305,0.361],[0.246,0.376],[0.206,0.372],[0.174,0.363],[0.162,0.342],[0.175,0.306],[0.197,0.262],[0.191,0.178],[0.245,0.214],[0.275,0.191],[0.293,0.177],[0.314,0.145],[0.344,0.108],[0.372,0.066],[0.407,0.043],[0.445,0.037],[0.479,0.063],[0.501,0.106],[0.517,0.148],[0.53,0.198],[0.541,0.216],[0.555,0.223],[0.59,0.267],[0.575,0.235],[0.581,0.165],[0.623,0.131],[0.676,0.124],[0.715,0.151],[0.745,0.192],[0.771,0.235],[0.81,0.273],[0.818,0.316],[0.815,0.332],[0.808,0.318],[0.818,0.287],[0.845,0.246],[0.891,0.22],[0.938,0.231],[0.993,0.268],[0.989,0.256],[0.984,0.223],[0.947,0.202],[0.9,0.185],[0.853,0.195],[0.802,0.223],[0.763,0.248],[0.749,0.271],[0.735,0.293],[0.699,0.306],[0.645,0.367],[0.648,0.422],[0.664,0.469],[0.731,0.503],[0.759,0.457],[0.785,0.436],[0.829,0.423],[0.856,0.398],[0.874,0.376],[0.874,0.333],[0.852,0.286],[0.818,0.244],[0.836,0.231],[0.84,0.224],[0.821,0.188],[0.768,0.175],[0.744,0.178],[0.728,0.187],[0.734,0.17],[0.749,0.143],[0.774,0.104],[0.781,0.039],[0.836,0.002],[0.788,0.011],[0.835,0.048],[0.832,0.067],[0.847,0.109],[0.826,0.15],[0.796,0.194],[0.775,0.217],[0.773,0.232],[0.747,0.246],[0.739,0.266],[0.754,0.306],[0.786,0.345],[0.82,0.378],[0.851,0.404],[0.847,0.437],[0.829,0.482],[0.813,0.486],[0.773,0.505],[0.734,0.529],[0.713,0.564],[0.715,0.605],[0.741,0.647],[0.782,0.679],[0.816,0.724],[0.872,0.726],[0.838,0.718],[0.81,0.742],[0.764,0.772],[0.732,0.813],[0.741,0.86],[0.687,0.909],[0.756,0.908],[0.716,0.882],[0.716,0.843],[0.696,0.803],[0.708,0.759],[0.744,0.722],[0.774,0.686],[0.794,0.65],[0.853,0.636],[0.861,0.636],[0.84,0.633],[0.802,0.617],[0.763,0.585],[0.73,0.547],[0.72,0.51],[0.674,0.496],[0.625,0.496],[0.577,0.502],[0.564,0.481],[0.544,0.475],[0.539,0.449],[0.552,0.408],[0.561,0.359],[0.566,0.317],[0.552,0.294],[0.527,0.283],[0.494,0.292],[0.46,0.323],[0.413,0.348],[0.388,0.34],[0.392,0.39],[0.41,0.427],[0.448,0.423],[0.485,0.39],[0.523,0.35],[0.596,0.385],[0.581,0.431],[0.552,0.351],[0.589,0.329],[0.622,0.329],[0.63,0.355],[0.625,0.4],[0.604,0.452],[0.597,0.497],[0.588,0.532],[0.593,0.555],[0.612,0.558],[0.651,0.565],[0.698,0.559]]},"method":"X-ray","resolution":3.12,"rna_type":"Group II intron ribozyme","rna_group":"Catalytic (ribozyme)","num_chains":1,"total_rna_len":390,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":99,"pocket_motifs":["junction","internal loop","hairpin loop","bulge","stem","single strand"],"rmsd":0.75,"host_chain_rmsd":0.75,"pocket_rmsd":0.87,"lig_bsa":234.8,"ligand_burial":0.385,"tm_score":0.989,"rg_apo":36.32,"rg_holo":36.55,"rg_delta":0.23,"bp_rewire_src":"dssr","bp_formed":10,"bp_broken":13,"bp_conserved":176,"bp_formed_wc":1,"bp_broken_wc":1,"bp_conserved_wc":118,"maxd":3.2,"water":0,"hbonds":2,"mw":568.2,"logp":4.13,"thumb_img":true,"thumb_v":1785389628,"apo_alts":[{"pdb":"3BWP","rmsd":1.1,"host_chain_rmsd":1.1,"apo_chain":"A","apo_len":356,"identity":100,"global_identity":95,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.905,"rg_delta":0.02,"pocket_rmsd":1.28,"maxd":7.1,"bp_formed":38,"bp_broken":15,"bp_conserved":148},{"pdb":"4E8M","rmsd":0.39,"host_chain_rmsd":0.39,"apo_chain":"A","apo_len":394,"identity":100,"global_identity":99,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.998,"rg_delta":0.02,"pocket_rmsd":0.46,"maxd":1.2,"bp_formed":6,"bp_broken":16,"bp_conserved":180},{"pdb":"4E8N","rmsd":0.61,"host_chain_rmsd":0.61,"apo_chain":"A","apo_len":392,"identity":100,"global_identity":99,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.991,"rg_delta":0.17,"pocket_rmsd":0.54,"maxd":2.4,"bp_formed":8,"bp_broken":14,"bp_conserved":178},{"pdb":"4E8Q","rmsd":0.63,"host_chain_rmsd":0.63,"apo_chain":"A","apo_len":392,"identity":100,"global_identity":99,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.99,"rg_delta":0.15,"pocket_rmsd":0.61,"maxd":2.9,"bp_formed":8,"bp_broken":10,"bp_conserved":178},{"pdb":"4E8R","rmsd":0.74,"host_chain_rmsd":0.74,"apo_chain":"A","apo_len":392,"identity":100,"global_identity":99,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.989,"rg_delta":0.12,"pocket_rmsd":0.73,"maxd":3.3,"bp_formed":8,"bp_broken":17,"bp_conserved":178},{"pdb":"4E8V","rmsd":1.08,"host_chain_rmsd":1.08,"apo_chain":"A","apo_len":388,"identity":100,"global_identity":99,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.983,"rg_delta":-0.17,"pocket_rmsd":0.99,"maxd":9.0,"bp_formed":18,"bp_broken":14,"bp_conserved":168},{"pdb":"4FAQ","rmsd":0.87,"host_chain_rmsd":0.87,"apo_chain":"A","apo_len":395,"identity":100,"global_identity":99,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.991,"rg_delta":0.04,"pocket_rmsd":0.87,"maxd":7.9,"bp_formed":6,"bp_broken":15,"bp_conserved":180},{"pdb":"4FAU","rmsd":0.9,"host_chain_rmsd":0.9,"apo_chain":"A","apo_len":392,"identity":100,"global_identity":98,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.989,"rg_delta":0.03,"pocket_rmsd":3.12,"maxd":12.0,"bp_formed":7,"bp_broken":14,"bp_conserved":179},{"pdb":"4FAX","rmsd":1.01,"host_chain_rmsd":1.01,"apo_chain":"A","apo_len":391,"identity":100,"global_identity":99,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.983,"rg_delta":0.16,"pocket_rmsd":2.02,"maxd":6.3,"bp_formed":13,"bp_broken":10,"bp_conserved":173},{"pdb":"5J01","rmsd":3.17,"host_chain_rmsd":3.17,"apo_chain":"A","apo_len":414,"identity":98,"global_identity":91,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.93,"rg_delta":0.64,"pocket_rmsd":2.12,"maxd":21.9,"bp_formed":10,"bp_broken":29,"bp_conserved":176},{"pdb":"8OLW","rmsd":0.99,"host_chain_rmsd":0.99,"apo_chain":"A","apo_len":395,"identity":100,"global_identity":99,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.989,"rg_delta":0.17,"pocket_rmsd":1.25,"maxd":8.2,"bp_formed":10,"bp_broken":17,"bp_conserved":176}],"n_apo_copies":0},{"id":"8RUK_VTR_A_B_401_pocket","title":"8RUK (VTR) vs 8RUL (apo)","struct_title":"Structure of Oceanobacillus iheyensis group II intron in the presence of Na+, Mg2+, and ARN25850","holo_pdb":"8RUK","ligand":"VTR","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"401","apo_pdb":"8RUL","apo_chain":"A","holo_len":387,"apo_len":392,"pocket_size":15,"thumb":{"holo":[[0.571,0.379],[0.592,0.307],[0.603,0.296],[0.628,0.314],[0.696,0.291],[0.714,0.252],[0.708,0.205],[0.681,0.163],[0.635,0.134],[0.583,0.125],[0.522,0.142],[0.489,0.13],[0.484,0.197],[0.469,0.208],[0.463,0.194],[0.451,0.161],[0.431,0.114],[0.408,0.07],[0.377,0.04],[0.342,0.028],[0.303,0.045],[0.276,0.084],[0.245,0.128],[0.199,0.172],[0.157,0.145],[0.129,0.099],[0.105,0.091],[0.079,0.101],[0.068,0.119],[0.077,0.138],[0.105,0.124],[0.141,0.086],[0.174,0.104],[0.171,0.134],[0.227,0.151],[0.199,0.189],[0.129,0.196],[0.085,0.186],[0.064,0.17],[0.076,0.163],[0.064,0.132],[0.09,0.137],[0.132,0.152],[0.161,0.193],[0.168,0.246],[0.153,0.294],[0.108,0.321],[0.069,0.361],[0.041,0.43],[0.04,0.487],[0.084,0.478],[0.109,0.455],[0.116,0.405],[0.1,0.356],[0.072,0.312],[0.052,0.288],[0.069,0.268],[0.022,0.28],[0.034,0.303],[0.073,0.306],[0.126,0.294],[0.168,0.265],[0.195,0.219],[0.186,0.166],[0.227,0.16],[0.27,0.128],[0.305,0.156],[0.339,0.191],[0.362,0.222],[0.365,0.238],[0.358,0.268],[0.36,0.265],[0.38,0.226],[0.41,0.18],[0.451,0.15],[0.496,0.16],[0.554,0.146],[0.579,0.187],[0.6,0.237],[0.615,0.271],[0.633,0.284],[0.689,0.337],[0.645,0.285],[0.649,0.238],[0.665,0.181],[0.689,0.134],[0.727,0.12],[0.772,0.124],[0.81,0.158],[0.874,0.194],[0.842,0.223],[0.813,0.248],[0.774,0.215],[0.744,0.17],[0.708,0.146],[0.665,0.131],[0.628,0.151],[0.602,0.187],[0.578,0.236],[0.566,0.266],[0.558,0.287],[0.546,0.27],[0.529,0.235],[0.521,0.291],[0.493,0.321],[0.537,0.29],[0.552,0.2],[0.54,0.161],[0.522,0.182],[0.499,0.171],[0.455,0.141],[0.409,0.144],[0.367,0.174],[0.331,0.203],[0.291,0.25],[0.298,0.263],[0.308,0.273],[0.306,0.252],[0.289,0.223],[0.267,0.217],[0.281,0.237],[0.272,0.278],[0.239,0.326],[0.213,0.367],[0.198,0.408],[0.204,0.434],[0.236,0.435],[0.277,0.436],[0.332,0.438],[0.377,0.441],[0.41,0.456],[0.435,0.492],[0.504,0.499],[0.532,0.528],[0.529,0.576],[0.497,0.642],[0.479,0.6],[0.532,0.65],[0.576,0.635],[0.597,0.587],[0.571,0.547],[0.556,0.488],[0.52,0.507],[0.439,0.539],[0.419,0.589],[0.397,0.639],[0.388,0.658],[0.386,0.668],[0.419,0.664],[0.468,0.69],[0.425,0.763],[0.412,0.681],[0.383,0.661],[0.356,0.622],[0.343,0.584],[0.328,0.573],[0.302,0.584],[0.265,0.608],[0.238,0.645],[0.209,0.685],[0.169,0.705],[0.129,0.711],[0.117,0.676],[0.105,0.628],[0.103,0.576],[0.106,0.533],[0.092,0.496],[0.076,0.416],[0.1,0.374],[0.129,0.344],[0.167,0.347],[0.212,0.377],[0.265,0.395],[0.28,0.438],[0.287,0.481],[0.296,0.502],[0.309,0.498],[0.344,0.564],[0.391,0.558],[0.469,0.495],[0.436,0.452],[0.395,0.408],[0.364,0.37],[0.324,0.374],[0.291,0.407],[0.262,0.451],[0.232,0.48],[0.224,0.485],[0.219,0.462],[0.221,0.459],[0.196,0.436],[0.157,0.399],[0.124,0.368],[0.09,0.34],[0.055,0.342],[0.011,0.369],[0.005,0.324],[0.001,0.326],[0.004,0.339],[0.022,0.364],[0.046,0.403],[0.065,0.451],[0.068,0.499],[0.034,0.524],[0.025,0.604],[0.064,0.547],[0.109,0.526],[0.145,0.523],[0.163,0.526],[0.167,0.551],[0.176,0.594],[0.184,0.637],[0.194,0.696],[0.216,0.728],[0.245,0.752],[0.274,0.727],[0.302,0.692],[0.337,0.645],[0.373,0.618],[0.437,0.609],[0.487,0.548],[0.44,0.602],[0.42,0.592],[0.375,0.6],[0.345,0.61],[0.333,0.602],[0.342,0.582],[0.36,0.542],[0.382,0.488],[0.384,0.446],[0.381,0.407],[0.344,0.383],[0.348,0.297],[0.357,0.33],[0.325,0.283],[0.303,0.366],[0.242,0.383],[0.201,0.373],[0.165,0.37],[0.156,0.346],[0.171,0.309],[0.191,0.262],[0.182,0.181],[0.241,0.216],[0.273,0.193],[0.288,0.18],[0.31,0.148],[0.338,0.109],[0.371,0.066],[0.409,0.042],[0.445,0.034],[0.475,0.063],[0.498,0.11],[0.517,0.155],[0.531,0.202],[0.541,0.221],[0.553,0.226],[0.592,0.271],[0.575,0.237],[0.58,0.169],[0.622,0.128],[0.678,0.125],[0.72,0.153],[0.75,0.199],[0.772,0.24],[0.813,0.278],[0.824,0.325],[0.82,0.342],[0.812,0.326],[0.822,0.294],[0.849,0.255],[0.896,0.225],[0.943,0.239],[1.0,0.276],[0.994,0.265],[0.987,0.229],[0.951,0.205],[0.904,0.191],[0.855,0.2],[0.805,0.226],[0.765,0.252],[0.751,0.276],[0.738,0.3],[0.698,0.314],[0.645,0.372],[0.655,0.42],[0.702,0.47],[0.727,0.515],[0.754,0.463],[0.773,0.45],[0.824,0.429],[0.859,0.406],[0.879,0.385],[0.883,0.343],[0.858,0.294],[0.827,0.251],[0.839,0.234],[0.847,0.23],[0.825,0.19],[0.773,0.179],[0.748,0.178],[0.731,0.186],[0.732,0.171],[0.751,0.138],[0.783,0.09],[0.781,0.027],[0.846,0.008],[0.799,0.0],[0.838,0.031],[0.843,0.061],[0.856,0.11],[0.827,0.152],[0.799,0.199],[0.775,0.228],[0.775,0.237],[0.748,0.253],[0.741,0.274],[0.755,0.315],[0.788,0.353],[0.822,0.389],[0.856,0.416],[0.849,0.445],[0.831,0.488],[0.812,0.498],[0.774,0.521],[0.727,0.546],[0.703,0.581],[0.713,0.623],[0.74,0.665],[0.782,0.692],[0.814,0.742],[0.873,0.741],[0.835,0.742],[0.808,0.764],[0.76,0.795],[0.727,0.833],[0.731,0.884],[0.702,0.937],[0.756,0.925],[0.712,0.893],[0.723,0.844],[0.694,0.827],[0.705,0.78],[0.738,0.735],[0.766,0.701],[0.791,0.662],[0.848,0.646],[0.865,0.648],[0.844,0.647],[0.8,0.63],[0.764,0.598],[0.728,0.555],[0.717,0.524],[0.67,0.509],[0.622,0.504],[0.575,0.508],[0.559,0.489],[0.54,0.479],[0.536,0.456],[0.551,0.414],[0.563,0.363],[0.565,0.321],[0.549,0.303],[0.524,0.285],[0.494,0.3],[0.454,0.329],[0.407,0.354],[0.389,0.346],[0.389,0.399],[0.411,0.433],[0.445,0.429],[0.483,0.396],[0.52,0.357],[0.595,0.392],[0.585,0.437],[0.552,0.357],[0.588,0.339],[0.621,0.338],[0.635,0.365],[0.63,0.406],[0.604,0.461],[0.597,0.504],[0.589,0.546],[0.591,0.569],[0.599,0.578],[0.652,0.583],[0.709,0.606]],"apo":[[0.358,0.431],[0.395,0.41],[0.45,0.379],[0.492,0.374],[0.57,0.373],[0.587,0.307],[0.602,0.298],[0.629,0.313],[0.698,0.289],[0.713,0.251],[0.709,0.206],[0.683,0.164],[0.632,0.134],[0.582,0.126],[0.524,0.143],[0.49,0.135],[0.486,0.197],[0.474,0.207],[0.462,0.197],[0.45,0.16],[0.432,0.113],[0.409,0.07],[0.38,0.04],[0.344,0.03],[0.306,0.045],[0.275,0.084],[0.244,0.134],[0.201,0.168],[0.161,0.146],[0.135,0.101],[0.11,0.094],[0.081,0.099],[0.073,0.119],[0.078,0.14],[0.107,0.123],[0.139,0.088],[0.17,0.106],[0.17,0.139],[0.227,0.15],[0.2,0.189],[0.134,0.196],[0.087,0.187],[0.067,0.168],[0.079,0.16],[0.066,0.135],[0.094,0.138],[0.129,0.153],[0.162,0.196],[0.168,0.246],[0.15,0.295],[0.106,0.319],[0.071,0.362],[0.042,0.434],[0.045,0.488],[0.084,0.481],[0.108,0.451],[0.113,0.405],[0.095,0.358],[0.072,0.316],[0.05,0.288],[0.069,0.264],[0.023,0.28],[0.033,0.307],[0.073,0.307],[0.124,0.296],[0.17,0.267],[0.196,0.219],[0.187,0.172],[0.229,0.158],[0.271,0.131],[0.305,0.156],[0.343,0.194],[0.362,0.225],[0.359,0.234],[0.355,0.267],[0.359,0.264],[0.381,0.226],[0.411,0.179],[0.453,0.156],[0.5,0.163],[0.555,0.149],[0.581,0.189],[0.601,0.235],[0.614,0.269],[0.633,0.284],[0.689,0.335],[0.644,0.284],[0.649,0.236],[0.665,0.181],[0.689,0.137],[0.727,0.12],[0.777,0.127],[0.815,0.159],[0.872,0.195],[0.843,0.224],[0.814,0.246],[0.776,0.215],[0.745,0.172],[0.708,0.145],[0.665,0.131],[0.629,0.15],[0.602,0.189],[0.579,0.233],[0.564,0.263],[0.558,0.283],[0.547,0.273],[0.529,0.237],[0.521,0.297],[0.491,0.323],[0.539,0.292],[0.55,0.203],[0.541,0.162],[0.525,0.184],[0.499,0.172],[0.454,0.141],[0.41,0.146],[0.372,0.178],[0.33,0.204],[0.298,0.255],[0.297,0.264],[0.307,0.271],[0.305,0.253],[0.287,0.222],[0.268,0.217],[0.28,0.239],[0.264,0.28],[0.237,0.325],[0.212,0.369],[0.196,0.405],[0.204,0.429],[0.234,0.435],[0.276,0.437],[0.329,0.438],[0.376,0.44],[0.41,0.456],[0.434,0.491],[0.503,0.5],[0.531,0.53],[0.534,0.577],[0.498,0.644],[0.476,0.596],[0.535,0.647],[0.577,0.632],[0.593,0.587],[0.571,0.549],[0.555,0.489],[0.519,0.504],[0.441,0.541],[0.424,0.591],[0.395,0.637],[0.387,0.658],[0.387,0.665],[0.417,0.659],[0.458,0.68],[0.43,0.751],[0.41,0.678],[0.386,0.659],[0.359,0.622],[0.344,0.584],[0.325,0.575],[0.304,0.589],[0.267,0.615],[0.233,0.651],[0.202,0.69],[0.167,0.706],[0.14,0.704],[0.121,0.668],[0.105,0.628],[0.104,0.575],[0.103,0.534],[0.095,0.494],[0.075,0.416],[0.099,0.378],[0.128,0.347],[0.164,0.348],[0.21,0.377],[0.261,0.395],[0.277,0.437],[0.283,0.481],[0.294,0.5],[0.306,0.502],[0.338,0.567],[0.392,0.563],[0.461,0.527],[0.448,0.481],[0.413,0.439],[0.39,0.385],[0.364,0.373],[0.326,0.373],[0.294,0.41],[0.261,0.45],[0.235,0.478],[0.223,0.489],[0.217,0.462],[0.217,0.457],[0.196,0.432],[0.155,0.4],[0.122,0.366],[0.09,0.342],[0.052,0.343],[0.013,0.374],[0.004,0.324],[0.0,0.322],[0.005,0.335],[0.023,0.361],[0.043,0.4],[0.06,0.448],[0.061,0.495],[0.035,0.523],[0.001,0.58],[0.06,0.547],[0.104,0.53],[0.139,0.52],[0.159,0.528],[0.172,0.549],[0.176,0.587],[0.185,0.633],[0.191,0.683],[0.207,0.72],[0.241,0.744],[0.273,0.726],[0.301,0.696],[0.335,0.644],[0.364,0.62],[0.424,0.615],[0.479,0.562],[0.439,0.599],[0.423,0.589],[0.378,0.601],[0.342,0.612],[0.334,0.601],[0.347,0.579],[0.362,0.539],[0.383,0.493],[0.385,0.448],[0.38,0.412],[0.347,0.383],[0.345,0.296],[0.354,0.33],[0.321,0.284],[0.301,0.367],[0.241,0.382],[0.199,0.377],[0.167,0.369],[0.156,0.347],[0.168,0.311],[0.191,0.266],[0.186,0.181],[0.24,0.217],[0.271,0.194],[0.289,0.18],[0.31,0.147],[0.341,0.11],[0.369,0.067],[0.405,0.044],[0.444,0.039],[0.478,0.065],[0.501,0.109],[0.516,0.152],[0.53,0.202],[0.54,0.221],[0.555,0.228],[0.59,0.272],[0.575,0.24],[0.581,0.168],[0.624,0.134],[0.678,0.127],[0.718,0.155],[0.748,0.197],[0.774,0.24],[0.813,0.279],[0.822,0.323],[0.819,0.339],[0.811,0.325],[0.822,0.293],[0.849,0.252],[0.896,0.225],[0.943,0.236],[1.0,0.274],[0.995,0.262],[0.991,0.229],[0.952,0.208],[0.905,0.19],[0.857,0.2],[0.806,0.228],[0.765,0.254],[0.752,0.276],[0.738,0.299],[0.701,0.312],[0.646,0.374],[0.648,0.43],[0.664,0.478],[0.733,0.513],[0.761,0.466],[0.787,0.444],[0.832,0.431],[0.86,0.406],[0.878,0.384],[0.878,0.34],[0.856,0.293],[0.822,0.25],[0.84,0.237],[0.844,0.229],[0.825,0.193],[0.771,0.18],[0.747,0.183],[0.731,0.192],[0.737,0.175],[0.752,0.147],[0.777,0.107],[0.785,0.042],[0.841,0.004],[0.792,0.013],[0.84,0.051],[0.836,0.071],[0.852,0.113],[0.83,0.155],[0.799,0.199],[0.778,0.223],[0.776,0.238],[0.75,0.251],[0.742,0.272],[0.757,0.312],[0.789,0.352],[0.823,0.386],[0.854,0.412],[0.85,0.445],[0.832,0.492],[0.816,0.496],[0.775,0.515],[0.735,0.538],[0.714,0.574],[0.716,0.616],[0.742,0.659],[0.784,0.691],[0.818,0.738],[0.874,0.739],[0.841,0.732],[0.812,0.756],[0.765,0.786],[0.733,0.827],[0.741,0.875],[0.687,0.924],[0.757,0.924],[0.716,0.897],[0.716,0.857],[0.696,0.817],[0.708,0.773],[0.745,0.735],[0.776,0.699],[0.796,0.662],[0.856,0.648],[0.864,0.648],[0.843,0.644],[0.804,0.628],[0.765,0.596],[0.731,0.557],[0.721,0.519],[0.675,0.505],[0.625,0.505],[0.576,0.51],[0.562,0.489],[0.543,0.484],[0.538,0.457],[0.551,0.415],[0.56,0.365],[0.566,0.323],[0.552,0.3],[0.526,0.289],[0.493,0.297],[0.458,0.329],[0.41,0.354],[0.384,0.346],[0.389,0.397],[0.407,0.434],[0.445,0.43],[0.483,0.396],[0.521,0.356],[0.596,0.392],[0.581,0.438],[0.551,0.357],[0.589,0.336],[0.623,0.336],[0.631,0.362],[0.625,0.407],[0.603,0.46],[0.597,0.506],[0.588,0.542],[0.592,0.565],[0.611,0.568],[0.651,0.575],[0.699,0.569]]},"method":"X-ray","resolution":4.81,"rna_type":"Group II intron ribozyme","rna_group":"Catalytic (ribozyme)","num_chains":1,"total_rna_len":388,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["junction","internal loop","hairpin loop","bulge","stem","single strand"],"rmsd":0.87,"host_chain_rmsd":0.87,"pocket_rmsd":1.51,"lig_bsa":153.4,"ligand_burial":0.254,"tm_score":0.994,"rg_apo":36.36,"rg_holo":36.42,"rg_delta":0.06,"bp_rewire_src":"dssr","bp_formed":13,"bp_broken":23,"bp_conserved":166,"bp_formed_wc":0,"bp_broken_wc":2,"bp_conserved_wc":116,"maxd":6.0,"water":0,"hbonds":3,"mw":568.2,"logp":4.13,"thumb_img":true,"thumb_v":1785389626,"apo_alts":[{"pdb":"3BWP","rmsd":1.46,"host_chain_rmsd":1.46,"apo_chain":"A","apo_len":356,"identity":100,"global_identity":94,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.903,"rg_delta":-0.17,"pocket_rmsd":2.1,"maxd":6.5,"bp_formed":37,"bp_broken":21,"bp_conserved":142},{"pdb":"4E8M","rmsd":0.95,"host_chain_rmsd":0.95,"apo_chain":"A","apo_len":394,"identity":100,"global_identity":100,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.992,"rg_delta":-0.15,"pocket_rmsd":1.63,"maxd":5.7,"bp_formed":9,"bp_broken":26,"bp_conserved":170},{"pdb":"4E8N","rmsd":0.89,"host_chain_rmsd":0.89,"apo_chain":"A","apo_len":392,"identity":100,"global_identity":100,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.993,"rg_delta":0.0,"pocket_rmsd":1.78,"maxd":4.9,"bp_formed":11,"bp_broken":24,"bp_conserved":168},{"pdb":"4E8Q","rmsd":0.89,"host_chain_rmsd":0.89,"apo_chain":"A","apo_len":392,"identity":100,"global_identity":100,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.993,"rg_delta":-0.03,"pocket_rmsd":1.67,"maxd":4.9,"bp_formed":11,"bp_broken":20,"bp_conserved":168},{"pdb":"4E8R","rmsd":0.98,"host_chain_rmsd":0.98,"apo_chain":"A","apo_len":392,"identity":100,"global_identity":100,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.992,"rg_delta":-0.05,"pocket_rmsd":1.59,"maxd":5.7,"bp_formed":10,"bp_broken":26,"bp_conserved":169},{"pdb":"4E8V","rmsd":1.51,"host_chain_rmsd":1.51,"apo_chain":"A","apo_len":388,"identity":100,"global_identity":100,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.977,"rg_delta":-0.35,"pocket_rmsd":1.94,"maxd":5.9,"bp_formed":18,"bp_broken":21,"bp_conserved":161},{"pdb":"4FAQ","rmsd":1.27,"host_chain_rmsd":1.27,"apo_chain":"A","apo_len":395,"identity":100,"global_identity":99,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.984,"rg_delta":-0.12,"pocket_rmsd":2.06,"maxd":6.1,"bp_formed":11,"bp_broken":27,"bp_conserved":168},{"pdb":"4FAU","rmsd":1.18,"host_chain_rmsd":1.18,"apo_chain":"A","apo_len":392,"identity":100,"global_identity":98,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.989,"rg_delta":-0.14,"pocket_rmsd":3.8,"maxd":12.9,"bp_formed":10,"bp_broken":24,"bp_conserved":169},{"pdb":"4FAX","rmsd":0.39,"host_chain_rmsd":0.39,"apo_chain":"A","apo_len":391,"identity":100,"global_identity":99,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.998,"rg_delta":-0.01,"pocket_rmsd":0.57,"maxd":1.2,"bp_formed":8,"bp_broken":12,"bp_conserved":171},{"pdb":"5J01","rmsd":2.99,"host_chain_rmsd":2.99,"apo_chain":"A","apo_len":414,"identity":98,"global_identity":91,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.93,"rg_delta":0.43,"pocket_rmsd":2.1,"maxd":13.3,"bp_formed":19,"bp_broken":45,"bp_conserved":160},{"pdb":"8OLW","rmsd":1.33,"host_chain_rmsd":1.33,"apo_chain":"A","apo_len":395,"identity":100,"global_identity":99,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.983,"rg_delta":0.02,"pocket_rmsd":2.13,"maxd":6.7,"bp_formed":15,"bp_broken":29,"bp_conserved":164}],"n_apo_copies":0},{"id":"8RUM_VTE_A_B_401_pocket","title":"8RUM (VTE) vs 8RUL (apo)","struct_title":"Structure of Oceanobacillus iheyensis group II intron in the presence of Li+, Mg2+, and intronistat B","holo_pdb":"8RUM","ligand":"VTE","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"401","apo_pdb":"8RUL","apo_chain":"A","holo_len":392,"apo_len":392,"pocket_size":19,"thumb":{"holo":[[0.371,0.475],[0.375,0.417],[0.42,0.416],[0.479,0.357],[0.546,0.367],[0.586,0.317],[0.602,0.304],[0.629,0.32],[0.699,0.297],[0.714,0.26],[0.71,0.212],[0.684,0.17],[0.637,0.144],[0.585,0.137],[0.524,0.151],[0.49,0.14],[0.486,0.204],[0.474,0.213],[0.463,0.202],[0.453,0.166],[0.433,0.118],[0.411,0.077],[0.38,0.044],[0.342,0.036],[0.306,0.05],[0.275,0.09],[0.244,0.14],[0.201,0.177],[0.157,0.156],[0.138,0.11],[0.113,0.099],[0.084,0.105],[0.073,0.126],[0.081,0.142],[0.11,0.126],[0.143,0.091],[0.172,0.111],[0.172,0.143],[0.23,0.156],[0.2,0.195],[0.133,0.201],[0.09,0.191],[0.07,0.176],[0.079,0.166],[0.069,0.141],[0.094,0.145],[0.134,0.161],[0.162,0.204],[0.169,0.255],[0.152,0.304],[0.107,0.326],[0.074,0.368],[0.042,0.44],[0.048,0.495],[0.086,0.49],[0.108,0.461],[0.114,0.414],[0.099,0.366],[0.073,0.321],[0.052,0.298],[0.07,0.273],[0.024,0.289],[0.034,0.314],[0.073,0.314],[0.126,0.304],[0.17,0.276],[0.198,0.229],[0.185,0.179],[0.23,0.161],[0.269,0.137],[0.306,0.161],[0.343,0.196],[0.363,0.228],[0.366,0.244],[0.359,0.276],[0.357,0.27],[0.381,0.232],[0.411,0.187],[0.453,0.161],[0.499,0.17],[0.551,0.156],[0.579,0.196],[0.6,0.242],[0.614,0.277],[0.631,0.291],[0.684,0.342],[0.641,0.289],[0.646,0.242],[0.66,0.185],[0.684,0.141],[0.723,0.129],[0.772,0.132],[0.812,0.165],[0.869,0.199],[0.84,0.231],[0.813,0.253],[0.774,0.222],[0.744,0.181],[0.706,0.152],[0.661,0.139],[0.624,0.159],[0.599,0.196],[0.576,0.241],[0.561,0.273],[0.556,0.292],[0.549,0.276],[0.53,0.248],[0.519,0.302],[0.491,0.329],[0.537,0.299],[0.55,0.209],[0.542,0.17],[0.524,0.19],[0.499,0.179],[0.454,0.147],[0.412,0.152],[0.373,0.182],[0.341,0.209],[0.287,0.249],[0.295,0.265],[0.308,0.275],[0.306,0.257],[0.288,0.227],[0.272,0.223],[0.28,0.243],[0.27,0.288],[0.239,0.331],[0.213,0.374],[0.198,0.413],[0.205,0.436],[0.237,0.442],[0.279,0.441],[0.332,0.442],[0.377,0.446],[0.41,0.46],[0.436,0.494],[0.507,0.504],[0.534,0.532],[0.533,0.581],[0.502,0.645],[0.477,0.598],[0.534,0.652],[0.577,0.637],[0.597,0.594],[0.574,0.554],[0.558,0.497],[0.519,0.51],[0.44,0.545],[0.421,0.597],[0.4,0.639],[0.388,0.661],[0.39,0.67],[0.421,0.664],[0.463,0.683],[0.433,0.758],[0.415,0.683],[0.39,0.663],[0.362,0.628],[0.346,0.585],[0.329,0.573],[0.303,0.589],[0.271,0.614],[0.246,0.654],[0.209,0.69],[0.173,0.703],[0.149,0.709],[0.123,0.678],[0.109,0.635],[0.11,0.588],[0.11,0.54],[0.095,0.501],[0.077,0.425],[0.101,0.386],[0.13,0.353],[0.166,0.354],[0.212,0.38],[0.261,0.399],[0.278,0.439],[0.287,0.482],[0.298,0.5],[0.322,0.488],[0.344,0.569],[0.396,0.566],[0.466,0.519],[0.44,0.476],[0.406,0.438],[0.383,0.389],[0.361,0.365],[0.325,0.372],[0.295,0.409],[0.266,0.45],[0.237,0.48],[0.229,0.489],[0.223,0.466],[0.219,0.464],[0.198,0.438],[0.162,0.41],[0.123,0.371],[0.092,0.35],[0.054,0.35],[0.014,0.381],[0.005,0.334],[0.0,0.328],[0.006,0.345],[0.024,0.37],[0.044,0.409],[0.064,0.457],[0.068,0.506],[0.034,0.537],[0.007,0.606],[0.064,0.552],[0.106,0.533],[0.143,0.525],[0.165,0.532],[0.176,0.564],[0.187,0.593],[0.193,0.639],[0.195,0.695],[0.214,0.724],[0.246,0.746],[0.28,0.727],[0.308,0.692],[0.338,0.651],[0.373,0.616],[0.431,0.613],[0.486,0.557],[0.44,0.603],[0.425,0.592],[0.378,0.604],[0.346,0.618],[0.34,0.608],[0.349,0.587],[0.363,0.551],[0.381,0.505],[0.384,0.46],[0.382,0.417],[0.349,0.385],[0.346,0.301],[0.355,0.337],[0.323,0.288],[0.3,0.371],[0.244,0.386],[0.2,0.382],[0.164,0.375],[0.157,0.352],[0.168,0.317],[0.193,0.27],[0.185,0.188],[0.241,0.222],[0.272,0.199],[0.291,0.185],[0.313,0.151],[0.343,0.114],[0.373,0.075],[0.41,0.043],[0.445,0.045],[0.475,0.073],[0.502,0.116],[0.517,0.16],[0.532,0.207],[0.542,0.227],[0.555,0.237],[0.59,0.28],[0.577,0.246],[0.581,0.175],[0.623,0.14],[0.678,0.134],[0.719,0.161],[0.749,0.203],[0.772,0.248],[0.813,0.284],[0.823,0.331],[0.82,0.348],[0.811,0.332],[0.819,0.299],[0.848,0.26],[0.893,0.231],[0.941,0.242],[1.0,0.279],[0.994,0.268],[0.989,0.232],[0.947,0.214],[0.901,0.196],[0.853,0.208],[0.805,0.234],[0.764,0.26],[0.75,0.282],[0.737,0.306],[0.7,0.324],[0.646,0.378],[0.653,0.434],[0.663,0.483],[0.733,0.52],[0.763,0.476],[0.787,0.452],[0.833,0.439],[0.86,0.413],[0.875,0.39],[0.879,0.347],[0.856,0.3],[0.823,0.258],[0.841,0.243],[0.847,0.238],[0.825,0.2],[0.775,0.185],[0.75,0.186],[0.733,0.199],[0.74,0.177],[0.752,0.148],[0.782,0.111],[0.781,0.052],[0.838,0.0],[0.799,0.012],[0.84,0.056],[0.828,0.072],[0.854,0.117],[0.834,0.163],[0.805,0.202],[0.779,0.227],[0.778,0.243],[0.751,0.259],[0.743,0.279],[0.754,0.317],[0.788,0.358],[0.823,0.395],[0.852,0.42],[0.851,0.452],[0.834,0.498],[0.819,0.502],[0.775,0.522],[0.734,0.544],[0.709,0.579],[0.713,0.625],[0.743,0.666],[0.78,0.698],[0.82,0.742],[0.874,0.746],[0.84,0.738],[0.811,0.762],[0.767,0.79],[0.735,0.83],[0.732,0.876],[0.693,0.932],[0.755,0.926],[0.719,0.898],[0.72,0.862],[0.697,0.823],[0.705,0.778],[0.745,0.738],[0.778,0.703],[0.797,0.665],[0.856,0.654],[0.863,0.654],[0.84,0.653],[0.798,0.636],[0.763,0.604],[0.729,0.56],[0.717,0.527],[0.671,0.511],[0.622,0.509],[0.575,0.516],[0.559,0.494],[0.543,0.487],[0.538,0.462],[0.555,0.422],[0.565,0.369],[0.568,0.325],[0.552,0.306],[0.524,0.293],[0.494,0.303],[0.458,0.334],[0.41,0.36],[0.388,0.35],[0.391,0.403],[0.408,0.438],[0.445,0.437],[0.482,0.405],[0.519,0.363],[0.595,0.4],[0.58,0.444],[0.552,0.363],[0.59,0.342],[0.622,0.342],[0.634,0.369],[0.627,0.411],[0.604,0.465],[0.598,0.51],[0.587,0.549],[0.593,0.571],[0.606,0.575],[0.655,0.586],[0.717,0.585]],"apo":[[0.358,0.437],[0.395,0.416],[0.45,0.385],[0.492,0.38],[0.57,0.378],[0.587,0.313],[0.603,0.303],[0.63,0.318],[0.699,0.294],[0.714,0.256],[0.71,0.211],[0.684,0.169],[0.633,0.139],[0.582,0.131],[0.524,0.149],[0.49,0.14],[0.487,0.203],[0.474,0.213],[0.463,0.203],[0.45,0.166],[0.433,0.119],[0.41,0.075],[0.38,0.045],[0.345,0.035],[0.306,0.051],[0.276,0.09],[0.244,0.14],[0.202,0.174],[0.161,0.152],[0.135,0.107],[0.11,0.1],[0.081,0.105],[0.074,0.125],[0.079,0.146],[0.108,0.129],[0.14,0.094],[0.171,0.112],[0.171,0.145],[0.228,0.156],[0.2,0.194],[0.135,0.202],[0.087,0.193],[0.068,0.174],[0.079,0.166],[0.066,0.141],[0.094,0.144],[0.129,0.159],[0.162,0.202],[0.168,0.252],[0.15,0.301],[0.106,0.325],[0.071,0.368],[0.042,0.44],[0.045,0.495],[0.085,0.488],[0.108,0.457],[0.113,0.412],[0.095,0.364],[0.072,0.322],[0.05,0.295],[0.069,0.27],[0.023,0.287],[0.034,0.313],[0.073,0.314],[0.125,0.302],[0.17,0.273],[0.196,0.225],[0.187,0.178],[0.229,0.164],[0.271,0.137],[0.306,0.162],[0.344,0.2],[0.362,0.231],[0.36,0.24],[0.356,0.273],[0.359,0.27],[0.381,0.232],[0.411,0.185],[0.453,0.162],[0.5,0.169],[0.555,0.154],[0.581,0.195],[0.601,0.241],[0.614,0.275],[0.633,0.289],[0.689,0.34],[0.644,0.29],[0.649,0.241],[0.665,0.187],[0.689,0.142],[0.727,0.125],[0.777,0.132],[0.815,0.164],[0.872,0.2],[0.843,0.229],[0.814,0.252],[0.776,0.22],[0.745,0.177],[0.708,0.15],[0.665,0.137],[0.629,0.156],[0.601,0.195],[0.578,0.239],[0.564,0.268],[0.558,0.289],[0.547,0.279],[0.53,0.242],[0.521,0.303],[0.492,0.329],[0.54,0.297],[0.551,0.208],[0.542,0.168],[0.525,0.189],[0.499,0.178],[0.454,0.146],[0.41,0.152],[0.372,0.184],[0.33,0.21],[0.298,0.261],[0.298,0.27],[0.307,0.277],[0.305,0.259],[0.288,0.227],[0.269,0.223],[0.281,0.244],[0.265,0.285],[0.239,0.331],[0.213,0.374],[0.198,0.411],[0.205,0.435],[0.236,0.441],[0.277,0.443],[0.33,0.444],[0.377,0.446],[0.411,0.461],[0.436,0.497],[0.505,0.506],[0.533,0.536],[0.535,0.582],[0.499,0.649],[0.478,0.602],[0.536,0.653],[0.579,0.637],[0.595,0.592],[0.573,0.554],[0.557,0.494],[0.521,0.51],[0.443,0.546],[0.425,0.596],[0.397,0.643],[0.388,0.664],[0.389,0.671],[0.419,0.665],[0.459,0.686],[0.431,0.757],[0.411,0.684],[0.387,0.665],[0.36,0.628],[0.344,0.59],[0.326,0.582],[0.304,0.595],[0.268,0.622],[0.234,0.658],[0.203,0.697],[0.168,0.713],[0.141,0.71],[0.122,0.675],[0.106,0.634],[0.105,0.582],[0.104,0.54],[0.095,0.501],[0.076,0.423],[0.1,0.384],[0.129,0.353],[0.165,0.355],[0.211,0.383],[0.261,0.401],[0.277,0.443],[0.284,0.488],[0.295,0.506],[0.307,0.508],[0.339,0.574],[0.393,0.569],[0.462,0.533],[0.448,0.487],[0.414,0.445],[0.39,0.391],[0.365,0.379],[0.327,0.379],[0.294,0.417],[0.261,0.457],[0.235,0.485],[0.224,0.496],[0.218,0.468],[0.218,0.463],[0.197,0.438],[0.156,0.406],[0.123,0.373],[0.09,0.348],[0.053,0.349],[0.013,0.38],[0.004,0.331],[0.0,0.328],[0.005,0.342],[0.022,0.367],[0.043,0.407],[0.06,0.455],[0.062,0.502],[0.035,0.53],[0.002,0.587],[0.06,0.554],[0.105,0.536],[0.139,0.526],[0.16,0.535],[0.172,0.556],[0.177,0.593],[0.186,0.639],[0.192,0.69],[0.208,0.727],[0.242,0.751],[0.274,0.732],[0.302,0.702],[0.335,0.65],[0.365,0.626],[0.425,0.621],[0.48,0.568],[0.44,0.605],[0.425,0.595],[0.379,0.607],[0.343,0.618],[0.336,0.607],[0.348,0.585],[0.363,0.545],[0.384,0.499],[0.387,0.453],[0.381,0.418],[0.348,0.389],[0.346,0.301],[0.355,0.336],[0.322,0.29],[0.302,0.373],[0.242,0.388],[0.2,0.383],[0.168,0.375],[0.157,0.353],[0.169,0.317],[0.192,0.272],[0.187,0.187],[0.241,0.223],[0.272,0.2],[0.29,0.186],[0.311,0.153],[0.341,0.116],[0.37,0.073],[0.406,0.05],[0.444,0.044],[0.479,0.07],[0.502,0.114],[0.517,0.157],[0.531,0.207],[0.541,0.226],[0.555,0.233],[0.591,0.278],[0.575,0.245],[0.581,0.174],[0.625,0.139],[0.679,0.132],[0.718,0.16],[0.748,0.202],[0.775,0.245],[0.814,0.284],[0.823,0.328],[0.819,0.345],[0.811,0.33],[0.822,0.298],[0.85,0.257],[0.896,0.23],[0.943,0.241],[1.0,0.279],[0.996,0.267],[0.991,0.234],[0.953,0.213],[0.905,0.195],[0.857,0.205],[0.806,0.234],[0.766,0.259],[0.752,0.282],[0.738,0.304],[0.702,0.317],[0.646,0.379],[0.649,0.435],[0.666,0.483],[0.734,0.518],[0.762,0.471],[0.789,0.449],[0.833,0.436],[0.861,0.411],[0.879,0.389],[0.879,0.345],[0.857,0.298],[0.823,0.255],[0.841,0.241],[0.845,0.234],[0.826,0.198],[0.772,0.185],[0.748,0.188],[0.732,0.197],[0.738,0.18],[0.753,0.152],[0.779,0.112],[0.786,0.047],[0.842,0.009],[0.793,0.018],[0.841,0.056],[0.837,0.075],[0.853,0.117],[0.831,0.16],[0.801,0.204],[0.779,0.228],[0.777,0.243],[0.751,0.256],[0.743,0.277],[0.757,0.317],[0.79,0.357],[0.824,0.391],[0.855,0.417],[0.851,0.45],[0.833,0.497],[0.817,0.501],[0.776,0.52],[0.737,0.544],[0.715,0.579],[0.718,0.622],[0.744,0.664],[0.786,0.696],[0.82,0.743],[0.876,0.744],[0.843,0.737],[0.814,0.761],[0.767,0.791],[0.735,0.832],[0.744,0.88],[0.689,0.93],[0.759,0.93],[0.718,0.903],[0.718,0.863],[0.698,0.823],[0.71,0.778],[0.747,0.74],[0.778,0.704],[0.798,0.667],[0.858,0.653],[0.865,0.653],[0.844,0.65],[0.805,0.633],[0.766,0.601],[0.732,0.563],[0.722,0.525],[0.676,0.51],[0.626,0.51],[0.577,0.516],[0.564,0.495],[0.544,0.489],[0.539,0.463],[0.553,0.421],[0.562,0.371],[0.567,0.328],[0.553,0.305],[0.527,0.294],[0.494,0.303],[0.459,0.335],[0.411,0.36],[0.385,0.352],[0.39,0.403],[0.408,0.44],[0.446,0.436],[0.483,0.402],[0.522,0.361],[0.596,0.397],[0.582,0.444],[0.552,0.363],[0.59,0.341],[0.624,0.341],[0.632,0.368],[0.627,0.412],[0.605,0.466],[0.598,0.511],[0.589,0.547],[0.593,0.571],[0.612,0.574],[0.652,0.581],[0.7,0.575]]},"method":"X-ray","resolution":3.62,"rna_type":"Group II intron ribozyme","rna_group":"Catalytic (ribozyme)","num_chains":1,"total_rna_len":393,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["junction","internal loop","hairpin loop","bulge","stem","single strand"],"rmsd":0.73,"host_chain_rmsd":0.73,"pocket_rmsd":1.74,"lig_bsa":231.5,"ligand_burial":0.394,"tm_score":0.996,"rg_apo":36.17,"rg_holo":36.03,"rg_delta":-0.14,"bp_rewire_src":"dssr","bp_formed":14,"bp_broken":14,"bp_conserved":175,"bp_formed_wc":0,"bp_broken_wc":4,"bp_conserved_wc":117,"maxd":4.5,"water":0,"hbonds":2,"mw":410.4,"logp":2.61,"thumb_img":true,"thumb_v":1785389627,"apo_alts":[{"pdb":"4E8M","rmsd":1.02,"host_chain_rmsd":1.02,"apo_chain":"A","apo_len":394,"identity":100,"global_identity":100,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.991,"rg_delta":-0.35,"pocket_rmsd":1.82,"maxd":4.7,"bp_formed":11,"bp_broken":18,"bp_conserved":178},{"pdb":"4E8N","rmsd":0.86,"host_chain_rmsd":0.86,"apo_chain":"A","apo_len":392,"identity":100,"global_identity":100,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.994,"rg_delta":-0.21,"pocket_rmsd":1.89,"maxd":5.2,"bp_formed":12,"bp_broken":15,"bp_conserved":177},{"pdb":"4E8Q","rmsd":0.9,"host_chain_rmsd":0.9,"apo_chain":"A","apo_len":392,"identity":100,"global_identity":100,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.993,"rg_delta":-0.23,"pocket_rmsd":1.98,"maxd":4.8,"bp_formed":14,"bp_broken":13,"bp_conserved":175},{"pdb":"4E8R","rmsd":0.92,"host_chain_rmsd":0.92,"apo_chain":"A","apo_len":392,"identity":100,"global_identity":100,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.993,"rg_delta":-0.26,"pocket_rmsd":1.9,"maxd":4.6,"bp_formed":15,"bp_broken":21,"bp_conserved":174},{"pdb":"4E8V","rmsd":1.52,"host_chain_rmsd":1.52,"apo_chain":"A","apo_len":388,"identity":100,"global_identity":100,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.967,"rg_delta":-0.55,"pocket_rmsd":2.02,"maxd":7.5,"bp_formed":23,"bp_broken":16,"bp_conserved":166},{"pdb":"4FAU","rmsd":1.21,"host_chain_rmsd":1.21,"apo_chain":"A","apo_len":392,"identity":100,"global_identity":98,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.988,"rg_delta":-0.34,"pocket_rmsd":3.34,"maxd":12.4,"bp_formed":13,"bp_broken":17,"bp_conserved":176},{"pdb":"4FAX","rmsd":1.01,"host_chain_rmsd":1.01,"apo_chain":"A","apo_len":391,"identity":100,"global_identity":99,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.99,"rg_delta":-0.22,"pocket_rmsd":2.07,"maxd":5.2,"bp_formed":19,"bp_broken":13,"bp_conserved":170}],"n_apo_copies":0},{"id":"8RUN_VTR_A_D_403_pocket","title":"8RUN (VTR) vs 8RUL (apo)","struct_title":"Structure of Oceanobacillus iheyensis group II intron in the presence of Li+, Mg2+, and ARN25850","holo_pdb":"8RUN","ligand":"VTR","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"403","apo_pdb":"8RUL","apo_chain":"A","holo_len":392,"apo_len":392,"pocket_size":17,"thumb":{"holo":[[0.36,0.426],[0.396,0.405],[0.461,0.38],[0.49,0.372],[0.566,0.372],[0.588,0.303],[0.602,0.292],[0.63,0.31],[0.698,0.285],[0.713,0.249],[0.709,0.201],[0.681,0.161],[0.634,0.135],[0.583,0.125],[0.523,0.142],[0.49,0.13],[0.486,0.195],[0.474,0.204],[0.463,0.192],[0.451,0.156],[0.433,0.109],[0.41,0.067],[0.38,0.035],[0.344,0.024],[0.306,0.041],[0.277,0.08],[0.245,0.128],[0.2,0.166],[0.162,0.143],[0.136,0.094],[0.113,0.087],[0.086,0.094],[0.073,0.113],[0.079,0.132],[0.109,0.117],[0.141,0.083],[0.173,0.099],[0.171,0.133],[0.227,0.146],[0.198,0.184],[0.128,0.193],[0.088,0.182],[0.068,0.161],[0.081,0.153],[0.068,0.126],[0.095,0.131],[0.134,0.149],[0.163,0.19],[0.166,0.241],[0.149,0.291],[0.105,0.315],[0.069,0.357],[0.042,0.427],[0.045,0.482],[0.084,0.473],[0.106,0.447],[0.113,0.401],[0.097,0.353],[0.071,0.31],[0.05,0.283],[0.069,0.258],[0.021,0.276],[0.032,0.299],[0.075,0.302],[0.126,0.29],[0.17,0.26],[0.198,0.217],[0.188,0.165],[0.231,0.152],[0.271,0.125],[0.306,0.15],[0.343,0.188],[0.362,0.219],[0.363,0.227],[0.357,0.263],[0.358,0.26],[0.381,0.22],[0.409,0.175],[0.452,0.151],[0.499,0.158],[0.553,0.144],[0.58,0.187],[0.603,0.232],[0.614,0.266],[0.632,0.28],[0.688,0.33],[0.641,0.278],[0.645,0.23],[0.663,0.174],[0.688,0.129],[0.725,0.117],[0.774,0.122],[0.812,0.155],[0.87,0.19],[0.84,0.219],[0.812,0.243],[0.773,0.213],[0.744,0.169],[0.705,0.142],[0.663,0.127],[0.625,0.146],[0.601,0.184],[0.578,0.228],[0.565,0.259],[0.557,0.279],[0.546,0.266],[0.53,0.233],[0.52,0.293],[0.493,0.318],[0.538,0.288],[0.551,0.199],[0.541,0.159],[0.524,0.178],[0.498,0.166],[0.454,0.138],[0.41,0.141],[0.37,0.171],[0.331,0.199],[0.296,0.254],[0.297,0.255],[0.309,0.267],[0.307,0.249],[0.291,0.217],[0.268,0.211],[0.281,0.235],[0.265,0.275],[0.238,0.323],[0.21,0.364],[0.198,0.4],[0.204,0.424],[0.234,0.429],[0.274,0.433],[0.328,0.432],[0.376,0.436],[0.41,0.452],[0.437,0.488],[0.504,0.496],[0.532,0.523],[0.533,0.572],[0.49,0.634],[0.475,0.591],[0.532,0.643],[0.576,0.629],[0.593,0.586],[0.572,0.543],[0.559,0.488],[0.519,0.501],[0.442,0.535],[0.42,0.587],[0.395,0.631],[0.387,0.649],[0.386,0.658],[0.417,0.653],[0.459,0.671],[0.427,0.743],[0.408,0.672],[0.384,0.655],[0.357,0.615],[0.341,0.575],[0.325,0.568],[0.301,0.583],[0.263,0.611],[0.227,0.651],[0.195,0.686],[0.164,0.706],[0.139,0.695],[0.121,0.661],[0.104,0.619],[0.107,0.569],[0.108,0.528],[0.094,0.485],[0.075,0.411],[0.1,0.371],[0.128,0.343],[0.166,0.341],[0.213,0.373],[0.261,0.387],[0.275,0.427],[0.284,0.474],[0.295,0.496],[0.307,0.495],[0.337,0.56],[0.389,0.557],[0.459,0.528],[0.45,0.48],[0.423,0.44],[0.398,0.395],[0.362,0.369],[0.326,0.373],[0.293,0.405],[0.261,0.443],[0.234,0.469],[0.224,0.477],[0.217,0.455],[0.217,0.451],[0.196,0.428],[0.156,0.396],[0.125,0.362],[0.09,0.337],[0.052,0.338],[0.011,0.367],[0.005,0.319],[0.0,0.317],[0.005,0.33],[0.022,0.356],[0.042,0.395],[0.061,0.444],[0.062,0.491],[0.03,0.52],[0.01,0.584],[0.06,0.538],[0.106,0.522],[0.141,0.516],[0.159,0.523],[0.171,0.544],[0.175,0.585],[0.186,0.629],[0.188,0.685],[0.212,0.714],[0.239,0.74],[0.27,0.721],[0.297,0.688],[0.327,0.641],[0.361,0.615],[0.425,0.606],[0.484,0.56],[0.44,0.591],[0.421,0.585],[0.375,0.596],[0.343,0.606],[0.335,0.595],[0.344,0.573],[0.361,0.538],[0.383,0.49],[0.382,0.447],[0.378,0.406],[0.343,0.378],[0.342,0.294],[0.356,0.324],[0.323,0.278],[0.301,0.361],[0.242,0.376],[0.198,0.372],[0.166,0.362],[0.158,0.339],[0.169,0.304],[0.192,0.258],[0.184,0.175],[0.241,0.213],[0.269,0.188],[0.288,0.175],[0.31,0.142],[0.343,0.106],[0.372,0.062],[0.41,0.036],[0.445,0.035],[0.475,0.063],[0.501,0.106],[0.516,0.15],[0.528,0.198],[0.54,0.217],[0.554,0.227],[0.588,0.268],[0.577,0.236],[0.582,0.164],[0.626,0.13],[0.68,0.124],[0.718,0.152],[0.748,0.195],[0.772,0.238],[0.813,0.274],[0.821,0.318],[0.818,0.337],[0.809,0.321],[0.821,0.289],[0.849,0.249],[0.894,0.221],[0.941,0.232],[1.0,0.267],[0.994,0.258],[0.988,0.223],[0.948,0.202],[0.903,0.185],[0.856,0.196],[0.806,0.223],[0.765,0.251],[0.749,0.273],[0.736,0.295],[0.7,0.308],[0.644,0.37],[0.649,0.425],[0.662,0.473],[0.732,0.508],[0.76,0.462],[0.785,0.441],[0.83,0.426],[0.861,0.401],[0.878,0.379],[0.877,0.335],[0.857,0.291],[0.822,0.248],[0.838,0.233],[0.844,0.228],[0.825,0.189],[0.773,0.176],[0.75,0.177],[0.728,0.187],[0.728,0.17],[0.749,0.146],[0.776,0.105],[0.783,0.038],[0.836,0.0],[0.791,0.006],[0.833,0.033],[0.836,0.07],[0.846,0.109],[0.829,0.155],[0.802,0.196],[0.776,0.222],[0.774,0.235],[0.748,0.249],[0.742,0.27],[0.755,0.308],[0.785,0.348],[0.82,0.381],[0.852,0.408],[0.852,0.443],[0.832,0.487],[0.813,0.49],[0.776,0.512],[0.735,0.535],[0.709,0.571],[0.714,0.614],[0.742,0.654],[0.779,0.688],[0.815,0.732],[0.87,0.735],[0.838,0.726],[0.808,0.748],[0.762,0.781],[0.729,0.82],[0.739,0.862],[0.687,0.919],[0.753,0.918],[0.712,0.892],[0.721,0.851],[0.698,0.812],[0.707,0.767],[0.742,0.725],[0.775,0.693],[0.794,0.658],[0.853,0.64],[0.863,0.642],[0.837,0.638],[0.799,0.622],[0.763,0.592],[0.73,0.551],[0.717,0.513],[0.674,0.498],[0.623,0.5],[0.576,0.505],[0.559,0.483],[0.541,0.478],[0.538,0.454],[0.551,0.411],[0.564,0.365],[0.568,0.318],[0.55,0.292],[0.525,0.283],[0.493,0.293],[0.457,0.324],[0.408,0.35],[0.382,0.339],[0.386,0.392],[0.408,0.429],[0.445,0.426],[0.481,0.393],[0.521,0.352],[0.593,0.387],[0.577,0.432],[0.552,0.352],[0.592,0.331],[0.623,0.332],[0.633,0.361],[0.626,0.404],[0.601,0.458],[0.594,0.502],[0.585,0.54],[0.591,0.56],[0.607,0.562],[0.656,0.573],[0.692,0.563]],"apo":[[0.357,0.426],[0.394,0.405],[0.449,0.374],[0.491,0.369],[0.569,0.368],[0.586,0.303],[0.601,0.293],[0.628,0.308],[0.697,0.285],[0.712,0.247],[0.708,0.202],[0.682,0.16],[0.632,0.13],[0.582,0.122],[0.523,0.139],[0.49,0.131],[0.486,0.193],[0.473,0.203],[0.462,0.193],[0.45,0.156],[0.433,0.109],[0.41,0.066],[0.38,0.036],[0.345,0.026],[0.306,0.041],[0.276,0.08],[0.244,0.129],[0.202,0.163],[0.162,0.142],[0.136,0.097],[0.111,0.09],[0.082,0.094],[0.074,0.114],[0.079,0.136],[0.108,0.119],[0.14,0.084],[0.172,0.102],[0.171,0.135],[0.228,0.145],[0.2,0.184],[0.135,0.191],[0.088,0.182],[0.068,0.163],[0.08,0.155],[0.067,0.13],[0.094,0.133],[0.13,0.148],[0.163,0.191],[0.168,0.241],[0.151,0.289],[0.106,0.313],[0.071,0.356],[0.042,0.428],[0.045,0.482],[0.084,0.475],[0.108,0.445],[0.113,0.4],[0.095,0.352],[0.072,0.31],[0.05,0.283],[0.069,0.259],[0.023,0.275],[0.034,0.301],[0.073,0.302],[0.125,0.29],[0.17,0.262],[0.196,0.214],[0.187,0.168],[0.229,0.153],[0.272,0.126],[0.306,0.152],[0.344,0.189],[0.362,0.22],[0.359,0.229],[0.355,0.262],[0.359,0.26],[0.38,0.221],[0.411,0.175],[0.452,0.152],[0.499,0.159],[0.554,0.145],[0.58,0.185],[0.6,0.231],[0.613,0.265],[0.632,0.279],[0.688,0.33],[0.643,0.28],[0.648,0.231],[0.664,0.177],[0.688,0.133],[0.726,0.116],[0.776,0.123],[0.813,0.155],[0.871,0.191],[0.841,0.22],[0.812,0.243],[0.775,0.211],[0.744,0.168],[0.707,0.141],[0.664,0.127],[0.628,0.146],[0.601,0.185],[0.577,0.229],[0.563,0.258],[0.557,0.279],[0.546,0.269],[0.529,0.232],[0.52,0.293],[0.491,0.319],[0.538,0.287],[0.55,0.199],[0.541,0.158],[0.525,0.179],[0.498,0.168],[0.453,0.137],[0.41,0.142],[0.372,0.173],[0.33,0.2],[0.298,0.25],[0.297,0.259],[0.307,0.266],[0.305,0.248],[0.288,0.217],[0.269,0.212],[0.281,0.234],[0.264,0.275],[0.238,0.32],[0.213,0.363],[0.197,0.4],[0.204,0.424],[0.235,0.43],[0.275,0.432],[0.329,0.433],[0.376,0.435],[0.409,0.451],[0.434,0.486],[0.503,0.495],[0.531,0.525],[0.533,0.572],[0.497,0.638],[0.475,0.591],[0.534,0.642],[0.576,0.626],[0.592,0.582],[0.571,0.544],[0.555,0.484],[0.519,0.499],[0.441,0.536],[0.423,0.585],[0.395,0.631],[0.386,0.652],[0.387,0.66],[0.417,0.653],[0.457,0.674],[0.428,0.745],[0.409,0.673],[0.385,0.654],[0.358,0.616],[0.343,0.579],[0.324,0.57],[0.303,0.583],[0.266,0.609],[0.232,0.645],[0.202,0.684],[0.167,0.7],[0.14,0.698],[0.121,0.662],[0.105,0.622],[0.104,0.569],[0.103,0.528],[0.095,0.488],[0.076,0.411],[0.1,0.372],[0.128,0.341],[0.165,0.343],[0.21,0.372],[0.261,0.39],[0.276,0.432],[0.283,0.476],[0.294,0.494],[0.305,0.497],[0.337,0.562],[0.391,0.557],[0.46,0.521],[0.447,0.476],[0.412,0.434],[0.389,0.38],[0.364,0.369],[0.326,0.368],[0.293,0.405],[0.26,0.445],[0.234,0.473],[0.223,0.484],[0.217,0.456],[0.217,0.452],[0.197,0.427],[0.156,0.395],[0.122,0.361],[0.09,0.336],[0.053,0.337],[0.013,0.368],[0.004,0.319],[0.0,0.316],[0.005,0.329],[0.023,0.355],[0.043,0.394],[0.06,0.442],[0.061,0.489],[0.035,0.517],[0.001,0.574],[0.06,0.541],[0.104,0.524],[0.139,0.514],[0.159,0.523],[0.171,0.544],[0.176,0.581],[0.185,0.627],[0.191,0.677],[0.206,0.714],[0.24,0.738],[0.272,0.72],[0.3,0.69],[0.334,0.638],[0.363,0.614],[0.423,0.61],[0.478,0.557],[0.438,0.594],[0.423,0.584],[0.377,0.596],[0.342,0.607],[0.334,0.595],[0.347,0.574],[0.362,0.534],[0.382,0.488],[0.385,0.443],[0.379,0.407],[0.347,0.378],[0.345,0.291],[0.354,0.325],[0.321,0.279],[0.301,0.362],[0.241,0.376],[0.2,0.372],[0.168,0.363],[0.156,0.342],[0.169,0.306],[0.191,0.261],[0.187,0.176],[0.241,0.213],[0.272,0.19],[0.29,0.176],[0.311,0.143],[0.341,0.106],[0.37,0.063],[0.406,0.04],[0.444,0.035],[0.478,0.061],[0.501,0.105],[0.516,0.148],[0.529,0.198],[0.54,0.217],[0.554,0.224],[0.589,0.268],[0.574,0.236],[0.581,0.164],[0.624,0.13],[0.678,0.123],[0.717,0.152],[0.747,0.193],[0.773,0.236],[0.812,0.275],[0.82,0.319],[0.817,0.335],[0.809,0.321],[0.82,0.289],[0.848,0.248],[0.894,0.221],[0.941,0.233],[0.997,0.27],[0.993,0.259],[0.989,0.225],[0.951,0.204],[0.904,0.187],[0.856,0.197],[0.804,0.225],[0.764,0.25],[0.75,0.272],[0.736,0.295],[0.7,0.308],[0.645,0.369],[0.647,0.425],[0.663,0.473],[0.731,0.508],[0.76,0.461],[0.786,0.44],[0.83,0.427],[0.859,0.402],[0.876,0.38],[0.876,0.336],[0.855,0.289],[0.821,0.246],[0.839,0.233],[0.843,0.226],[0.824,0.19],[0.77,0.176],[0.746,0.179],[0.73,0.188],[0.737,0.171],[0.751,0.144],[0.777,0.104],[0.784,0.039],[0.841,0.001],[0.792,0.01],[0.839,0.048],[0.836,0.067],[0.851,0.109],[0.829,0.152],[0.799,0.195],[0.777,0.219],[0.775,0.234],[0.749,0.247],[0.741,0.268],[0.755,0.308],[0.787,0.348],[0.821,0.381],[0.853,0.408],[0.849,0.441],[0.83,0.487],[0.814,0.491],[0.773,0.511],[0.734,0.534],[0.712,0.569],[0.715,0.611],[0.74,0.654],[0.782,0.686],[0.816,0.733],[0.872,0.734],[0.839,0.727],[0.81,0.751],[0.763,0.781],[0.731,0.821],[0.739,0.869],[0.685,0.919],[0.754,0.919],[0.714,0.892],[0.714,0.852],[0.694,0.812],[0.706,0.767],[0.743,0.73],[0.774,0.694],[0.795,0.657],[0.855,0.643],[0.862,0.643],[0.841,0.64],[0.802,0.623],[0.763,0.591],[0.729,0.553],[0.72,0.514],[0.673,0.5],[0.624,0.5],[0.575,0.506],[0.562,0.484],[0.542,0.479],[0.537,0.452],[0.551,0.411],[0.56,0.361],[0.565,0.318],[0.551,0.296],[0.525,0.284],[0.492,0.293],[0.458,0.324],[0.41,0.349],[0.384,0.341],[0.389,0.392],[0.406,0.429],[0.445,0.426],[0.482,0.392],[0.521,0.351],[0.595,0.387],[0.58,0.434],[0.551,0.353],[0.588,0.331],[0.622,0.331],[0.63,0.358],[0.625,0.403],[0.602,0.456],[0.596,0.501],[0.587,0.537],[0.591,0.56],[0.61,0.563],[0.65,0.57],[0.697,0.564]]},"method":"X-ray","resolution":3.73,"rna_type":"Group II intron ribozyme","rna_group":"Catalytic (ribozyme)","num_chains":1,"total_rna_len":393,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["junction","internal loop","hairpin loop","bulge","stem","single strand"],"rmsd":0.42,"host_chain_rmsd":0.42,"pocket_rmsd":0.57,"lig_bsa":239.1,"ligand_burial":0.397,"tm_score":0.998,"rg_apo":36.17,"rg_holo":36.17,"rg_delta":0.0,"bp_rewire_src":"dssr","bp_formed":13,"bp_broken":14,"bp_conserved":175,"bp_formed_wc":1,"bp_broken_wc":0,"bp_conserved_wc":121,"maxd":2.0,"water":0,"hbonds":4,"mw":568.2,"logp":4.13,"thumb_img":true,"thumb_v":1785389627,"apo_alts":[{"pdb":"4E8M","rmsd":0.74,"host_chain_rmsd":0.74,"apo_chain":"A","apo_len":394,"identity":100,"global_identity":100,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.995,"rg_delta":-0.21,"pocket_rmsd":1.29,"maxd":2.8,"bp_formed":8,"bp_broken":16,"bp_conserved":180},{"pdb":"4E8N","rmsd":0.59,"host_chain_rmsd":0.59,"apo_chain":"A","apo_len":392,"identity":100,"global_identity":100,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.997,"rg_delta":-0.07,"pocket_rmsd":1.23,"maxd":3.0,"bp_formed":8,"bp_broken":12,"bp_conserved":180},{"pdb":"4E8Q","rmsd":0.6,"host_chain_rmsd":0.6,"apo_chain":"A","apo_len":392,"identity":100,"global_identity":100,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.996,"rg_delta":-0.09,"pocket_rmsd":1.21,"maxd":3.0,"bp_formed":10,"bp_broken":10,"bp_conserved":178},{"pdb":"4E8R","rmsd":0.73,"host_chain_rmsd":0.73,"apo_chain":"A","apo_len":392,"identity":100,"global_identity":100,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.995,"rg_delta":-0.12,"pocket_rmsd":1.23,"maxd":3.2,"bp_formed":14,"bp_broken":21,"bp_conserved":174},{"pdb":"4E8V","rmsd":1.35,"host_chain_rmsd":1.35,"apo_chain":"A","apo_len":388,"identity":100,"global_identity":100,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.971,"rg_delta":-0.41,"pocket_rmsd":1.4,"maxd":9.4,"bp_formed":23,"bp_broken":17,"bp_conserved":165},{"pdb":"4FAU","rmsd":0.94,"host_chain_rmsd":0.94,"apo_chain":"A","apo_len":392,"identity":100,"global_identity":98,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.993,"rg_delta":-0.21,"pocket_rmsd":3.53,"maxd":13.0,"bp_formed":12,"bp_broken":17,"bp_conserved":176},{"pdb":"4FAX","rmsd":0.92,"host_chain_rmsd":0.92,"apo_chain":"A","apo_len":391,"identity":100,"global_identity":99,"apo_n_prot":0,"apo_n_dna":0,"tm_score":0.99,"rg_delta":-0.08,"pocket_rmsd":2.12,"maxd":5.2,"bp_formed":19,"bp_broken":14,"bp_conserved":169}],"n_apo_copies":0},{"id":"8T5O_TAC_A_B_301_pocket","title":"8T5O (TAC) vs 8TKJ (apo)","struct_title":"Cryo-EM structure of RNA device 43, holo state","holo_pdb":"8T5O","ligand":"TAC","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"301","apo_pdb":"8TKJ","apo_chain":"A","holo_len":111,"apo_len":111,"pocket_size":19,"thumb":{"holo":[[0.011,0.103],[0.048,0.103],[0.084,0.081],[0.122,0.058],[0.137,0.027],[0.155,0.017],[0.18,0.04],[0.201,0.081],[0.232,0.12],[0.261,0.142],[0.308,0.149],[0.272,0.189],[0.249,0.233],[0.245,0.272],[0.267,0.31],[0.307,0.324],[0.358,0.322],[0.399,0.329],[0.431,0.299],[0.482,0.262],[0.444,0.255],[0.389,0.3],[0.386,0.251],[0.421,0.213],[0.414,0.171],[0.405,0.124],[0.389,0.085],[0.357,0.064],[0.323,0.069],[0.284,0.093],[0.218,0.111],[0.217,0.125],[0.265,0.119],[0.291,0.166],[0.337,0.126],[0.373,0.099],[0.415,0.088],[0.447,0.104],[0.461,0.146],[0.471,0.19],[0.48,0.234],[0.494,0.261],[0.514,0.268],[0.543,0.251],[0.577,0.222],[0.615,0.192],[0.655,0.18],[0.689,0.189],[0.739,0.223],[0.814,0.206],[0.824,0.214],[0.82,0.201],[0.795,0.181],[0.76,0.149],[0.713,0.147],[0.678,0.178],[0.67,0.221],[0.611,0.246],[0.658,0.246],[0.717,0.288],[0.701,0.249],[0.711,0.208],[0.69,0.146],[0.707,0.11],[0.746,0.101],[0.793,0.111],[0.833,0.132],[0.86,0.16],[0.875,0.188],[0.885,0.2],[0.886,0.191],[0.876,0.157],[0.871,0.109],[0.876,0.063],[0.898,0.015],[0.938,0.011],[1.0,0.007],[0.991,0.032],[0.961,0.027],[0.93,0.046],[0.884,0.035],[0.845,0.049],[0.823,0.084],[0.817,0.132],[0.817,0.181],[0.823,0.215],[0.773,0.287],[0.728,0.276],[0.69,0.315],[0.66,0.313],[0.64,0.288],[0.631,0.243],[0.629,0.195],[0.622,0.163],[0.599,0.153],[0.564,0.162],[0.524,0.185],[0.481,0.206],[0.444,0.194],[0.395,0.243],[0.374,0.258],[0.336,0.267],[0.292,0.266],[0.246,0.248],[0.22,0.225],[0.211,0.176],[0.197,0.161],[0.167,0.142],[0.142,0.088],[0.118,0.04],[0.089,0.027]],"apo":[[0.0,0.087],[0.038,0.107],[0.072,0.086],[0.108,0.056],[0.143,0.025],[0.158,0.017],[0.182,0.038],[0.204,0.075],[0.232,0.113],[0.262,0.142],[0.309,0.149],[0.275,0.187],[0.249,0.233],[0.243,0.273],[0.267,0.307],[0.308,0.324],[0.358,0.327],[0.397,0.336],[0.43,0.302],[0.482,0.267],[0.443,0.258],[0.387,0.303],[0.389,0.255],[0.419,0.214],[0.415,0.17],[0.405,0.123],[0.387,0.087],[0.362,0.065],[0.324,0.068],[0.287,0.095],[0.222,0.113],[0.227,0.119],[0.261,0.124],[0.295,0.163],[0.342,0.12],[0.38,0.103],[0.418,0.09],[0.449,0.107],[0.459,0.15],[0.477,0.187],[0.48,0.238],[0.498,0.265],[0.516,0.272],[0.545,0.259],[0.576,0.227],[0.616,0.192],[0.657,0.183],[0.692,0.191],[0.741,0.223],[0.814,0.206],[0.823,0.211],[0.819,0.201],[0.792,0.178],[0.758,0.15],[0.705,0.143],[0.671,0.18],[0.686,0.219],[0.627,0.233],[0.648,0.251],[0.721,0.285],[0.7,0.25],[0.71,0.209],[0.685,0.15],[0.704,0.116],[0.741,0.105],[0.786,0.108],[0.832,0.132],[0.859,0.157],[0.879,0.186],[0.886,0.199],[0.888,0.188],[0.879,0.157],[0.867,0.113],[0.87,0.069],[0.892,0.018],[0.928,0.006],[0.993,0.0],[0.986,0.026],[0.962,0.03],[0.924,0.042],[0.878,0.033],[0.84,0.049],[0.821,0.085],[0.812,0.133],[0.817,0.177],[0.825,0.216],[0.781,0.286],[0.73,0.278],[0.696,0.317],[0.669,0.316],[0.644,0.29],[0.633,0.245],[0.632,0.199],[0.624,0.167],[0.6,0.152],[0.563,0.163],[0.524,0.185],[0.483,0.207],[0.443,0.196],[0.396,0.244],[0.374,0.256],[0.337,0.266],[0.294,0.265],[0.244,0.247],[0.213,0.223],[0.213,0.176],[0.198,0.161],[0.167,0.139],[0.141,0.084],[0.118,0.034],[0.098,0.016]]},"method":"EM","resolution":2.98,"rna_type":"Riboswitch","rna_group":"Riboswitch","num_chains":1,"total_rna_len":111,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["junction","internal loop","hairpin loop","stem"],"rmsd":0.81,"host_chain_rmsd":0.81,"pocket_rmsd":0.99,"lig_bsa":392.4,"ligand_burial":0.699,"tm_score":0.958,"rg_apo":31.55,"rg_holo":31.56,"rg_delta":0.01,"bp_rewire_src":"dssr","bp_formed":2,"bp_broken":1,"bp_conserved":49,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":30,"maxd":2.5,"water":0,"hbonds":4,"mw":444.4,"logp":-0.21,"thumb_img":true,"thumb_v":1785389626,"apo_alts":[],"n_apo_copies":0},{"id":"8U5T_VLR_A_H_105_pocket","title":"8U5T (VLR) vs 8U5R (apo)","struct_title":"Structure of Mango II variant aptamer bound to T01-6A-B","holo_pdb":"8U5T","ligand":"VLR","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"105","apo_pdb":"8U5R","apo_chain":"A","holo_len":36,"apo_len":36,"pocket_size":16,"thumb":{"holo":[[0.689,0.553],[0.76,0.541],[0.84,0.47],[0.896,0.36],[0.911,0.218],[0.855,0.098],[0.729,0.051],[0.576,0.001],[0.557,0.093],[0.481,0.291],[0.442,0.411],[0.419,0.49],[0.359,0.493],[0.479,0.505],[0.284,0.469],[0.167,0.447],[0.124,0.521],[0.09,0.398],[0.001,0.464],[0.087,0.275],[0.116,0.18],[0.087,0.232],[0.181,0.142],[0.094,0.056],[0.288,0.082],[0.395,0.139],[0.363,0.159],[0.446,0.342],[0.448,0.229],[0.585,0.058],[0.697,0.097],[0.828,0.124],[0.933,0.197],[1.0,0.307],[0.999,0.443],[0.944,0.562]],"apo":[[0.688,0.552],[0.755,0.54],[0.84,0.471],[0.896,0.359],[0.91,0.218],[0.854,0.097],[0.725,0.05],[0.571,0.0],[0.557,0.093],[0.483,0.295],[0.443,0.416],[0.412,0.488],[0.362,0.493],[0.48,0.506],[0.286,0.471],[0.167,0.448],[0.13,0.523],[0.093,0.396],[0.0,0.461],[0.089,0.274],[0.118,0.179],[0.093,0.232],[0.182,0.142],[0.091,0.056],[0.288,0.081],[0.395,0.138],[0.363,0.158],[0.44,0.345],[0.45,0.23],[0.585,0.056],[0.698,0.096],[0.828,0.126],[0.933,0.196],[1.0,0.308],[0.996,0.443],[0.943,0.563]]},"method":"X-ray","resolution":2.2,"rna_type":"Fluorescing aptamer","rna_group":"Aptamer","num_chains":1,"total_rna_len":108,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["hairpin loop"],"rmsd":0.19,"host_chain_rmsd":0.19,"pocket_rmsd":0.24,"lig_bsa":602.7,"ligand_burial":0.783,"tm_score":0.982,"rg_apo":14.92,"rg_holo":14.97,"rg_delta":0.05,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":0,"bp_conserved":21,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":6,"maxd":0.6,"water":0,"hbonds":1,"mw":856.1,"logp":5.38,"thumb_img":true,"thumb_v":1785389626,"apo_alts":[],"n_apo_copies":3},{"id":"8U5T_VLR_B_L_104_pocket","title":"8U5T (VLR) vs 8U5R (apo)","struct_title":"Structure of Mango II variant aptamer bound to T01-6A-B","holo_pdb":"8U5T","ligand":"VLR","holo_chain":"B","holo_rna_chain":"B","lig_auth_chain":"B","nearest_rna_chain":"B","lig_resseq":"104","apo_pdb":"8U5R","apo_chain":"B","holo_len":36,"apo_len":36,"pocket_size":18,"thumb":{"holo":[[0.711,0.517],[0.775,0.504],[0.851,0.437],[0.898,0.327],[0.911,0.193],[0.851,0.081],[0.731,0.045],[0.58,0.002],[0.573,0.088],[0.5,0.277],[0.459,0.392],[0.447,0.463],[0.38,0.464],[0.499,0.481],[0.309,0.441],[0.196,0.42],[0.165,0.488],[0.128,0.371],[0.0,0.392],[0.126,0.25],[0.157,0.165],[0.126,0.212],[0.217,0.13],[0.125,0.028],[0.321,0.071],[0.419,0.132],[0.391,0.147],[0.471,0.32],[0.472,0.219],[0.602,0.056],[0.709,0.085],[0.832,0.105],[0.933,0.172],[0.998,0.273],[1.0,0.4],[0.952,0.514]],"apo":[[0.706,0.516],[0.771,0.501],[0.847,0.436],[0.9,0.327],[0.909,0.192],[0.852,0.082],[0.727,0.042],[0.578,0.0],[0.57,0.088],[0.503,0.278],[0.462,0.394],[0.443,0.459],[0.383,0.463],[0.498,0.483],[0.313,0.44],[0.197,0.418],[0.17,0.491],[0.129,0.37],[0.003,0.392],[0.128,0.253],[0.158,0.162],[0.137,0.219],[0.219,0.13],[0.121,0.03],[0.321,0.071],[0.422,0.132],[0.393,0.14],[0.464,0.322],[0.472,0.215],[0.601,0.054],[0.709,0.088],[0.832,0.106],[0.934,0.172],[0.997,0.277],[0.998,0.401],[0.947,0.515]]},"method":"X-ray","resolution":2.2,"rna_type":"Fluorescing aptamer","rna_group":"Aptamer","num_chains":1,"total_rna_len":108,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["hairpin loop"],"rmsd":0.37,"host_chain_rmsd":0.21,"pocket_rmsd":0.24,"lig_bsa":556.1,"ligand_burial":0.811,"tm_score":0.963,"rg_apo":15.04,"rg_holo":15.1,"rg_delta":0.06,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":0,"bp_conserved":21,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":6,"maxd":0.9,"water":0,"hbonds":1,"mw":856.1,"logp":5.38,"thumb_img":true,"thumb_v":1785389626,"apo_alts":[],"n_apo_copies":0},{"id":"8U5T_VLR_C_O_103_pocket","title":"8U5T (VLR) vs 8U5R (apo)","struct_title":"Structure of Mango II variant aptamer bound to T01-6A-B","holo_pdb":"8U5T","ligand":"VLR","holo_chain":"C","holo_rna_chain":"C","lig_auth_chain":"C","nearest_rna_chain":"C","lig_resseq":"103","apo_pdb":"8U5R","apo_chain":"C","holo_len":36,"apo_len":36,"pocket_size":16,"thumb":{"holo":[[0.743,0.507],[0.776,0.495],[0.829,0.424],[0.875,0.316],[0.884,0.186],[0.836,0.079],[0.722,0.046],[0.558,0.001],[0.566,0.083],[0.493,0.272],[0.445,0.389],[0.423,0.433],[0.363,0.455],[0.486,0.483],[0.304,0.44],[0.188,0.411],[0.13,0.462],[0.111,0.353],[0.012,0.415],[0.123,0.244],[0.149,0.153],[0.106,0.182],[0.2,0.109],[0.131,0.034],[0.323,0.065],[0.407,0.124],[0.366,0.129],[0.463,0.275],[0.451,0.208],[0.622,0.079],[0.735,0.078],[0.861,0.1],[0.959,0.16],[1.0,0.265],[0.998,0.388],[0.96,0.508]],"apo":[[0.746,0.504],[0.775,0.497],[0.827,0.429],[0.876,0.318],[0.888,0.19],[0.836,0.076],[0.717,0.042],[0.558,0.0],[0.566,0.084],[0.491,0.273],[0.446,0.39],[0.427,0.438],[0.366,0.454],[0.486,0.483],[0.303,0.44],[0.188,0.413],[0.134,0.457],[0.114,0.355],[0.0,0.404],[0.122,0.246],[0.148,0.15],[0.106,0.185],[0.201,0.11],[0.132,0.033],[0.322,0.063],[0.409,0.122],[0.373,0.132],[0.458,0.289],[0.447,0.206],[0.622,0.075],[0.735,0.081],[0.861,0.098],[0.957,0.158],[0.998,0.266],[0.996,0.388],[0.964,0.501]]},"method":"X-ray","resolution":2.2,"rna_type":"Fluorescing aptamer","rna_group":"Aptamer","num_chains":1,"total_rna_len":108,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["hairpin loop"],"rmsd":0.39,"host_chain_rmsd":0.29,"pocket_rmsd":0.31,"lig_bsa":606.8,"ligand_burial":0.839,"tm_score":0.949,"rg_apo":15.26,"rg_holo":15.27,"rg_delta":0.01,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":0,"bp_conserved":21,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":6,"maxd":1.0,"water":0,"hbonds":0,"mw":856.1,"logp":5.38,"thumb_img":true,"thumb_v":1785389627,"apo_alts":[],"n_apo_copies":0},{"id":"8U5Z_W6F_B_M_104_pocket","title":"8U5Z (W6F) vs 8U5R (apo)","struct_title":"Structure of Mango II variant aptamer bound to T01-7M-B","holo_pdb":"8U5Z","ligand":"W6F","holo_chain":"B","holo_rna_chain":"B","lig_auth_chain":"B","nearest_rna_chain":"B","lig_resseq":"104","apo_pdb":"8U5R","apo_chain":"B","holo_len":36,"apo_len":36,"pocket_size":16,"thumb":{"holo":[[0.705,0.522],[0.772,0.509],[0.847,0.444],[0.899,0.334],[0.909,0.201],[0.853,0.088],[0.727,0.047],[0.577,0.0],[0.569,0.09],[0.502,0.281],[0.46,0.401],[0.445,0.478],[0.384,0.471],[0.497,0.495],[0.315,0.448],[0.197,0.427],[0.166,0.499],[0.127,0.378],[0.001,0.4],[0.127,0.26],[0.156,0.168],[0.12,0.22],[0.215,0.135],[0.118,0.037],[0.318,0.075],[0.42,0.137],[0.391,0.141],[0.462,0.324],[0.472,0.22],[0.602,0.058],[0.71,0.092],[0.834,0.111],[0.936,0.177],[1.0,0.283],[0.998,0.409],[0.947,0.524]],"apo":[[0.705,0.523],[0.771,0.508],[0.848,0.443],[0.9,0.334],[0.91,0.198],[0.853,0.087],[0.727,0.047],[0.577,0.005],[0.569,0.094],[0.502,0.284],[0.461,0.401],[0.441,0.466],[0.381,0.47],[0.497,0.491],[0.312,0.448],[0.194,0.426],[0.167,0.498],[0.126,0.377],[0.0,0.4],[0.125,0.259],[0.155,0.167],[0.134,0.225],[0.216,0.136],[0.118,0.036],[0.319,0.076],[0.42,0.137],[0.391,0.146],[0.463,0.328],[0.471,0.221],[0.6,0.059],[0.709,0.093],[0.832,0.111],[0.935,0.177],[0.998,0.283],[0.999,0.408],[0.948,0.522]]},"method":"X-ray","resolution":2.5,"rna_type":"Fluorescing aptamer","rna_group":"Aptamer","num_chains":1,"total_rna_len":108,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["hairpin loop"],"rmsd":0.3,"host_chain_rmsd":0.23,"pocket_rmsd":0.3,"lig_bsa":539.6,"ligand_burial":0.816,"tm_score":0.958,"rg_apo":15.04,"rg_holo":15.08,"rg_delta":0.04,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":0,"bp_conserved":21,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":6,"maxd":0.9,"water":0,"hbonds":2,"mw":764.0,"logp":4.01,"thumb_img":true,"thumb_v":1785389628,"apo_alts":[],"n_apo_copies":0},{"id":"8U5Z_W6F_C_P_103_pocket","title":"8U5Z (W6F) vs 8U5R (apo)","struct_title":"Structure of Mango II variant aptamer bound to T01-7M-B","holo_pdb":"8U5Z","ligand":"W6F","holo_chain":"C","holo_rna_chain":"C","lig_auth_chain":"C","nearest_rna_chain":"C","lig_resseq":"103","apo_pdb":"8U5R","apo_chain":"C","holo_len":36,"apo_len":36,"pocket_size":16,"thumb":{"holo":[[0.755,0.51],[0.778,0.499],[0.833,0.43],[0.882,0.321],[0.892,0.194],[0.84,0.083],[0.72,0.045],[0.562,0.0],[0.57,0.085],[0.491,0.274],[0.446,0.392],[0.426,0.448],[0.363,0.456],[0.485,0.478],[0.301,0.442],[0.184,0.416],[0.129,0.465],[0.112,0.356],[0.021,0.411],[0.121,0.244],[0.146,0.154],[0.099,0.189],[0.199,0.112],[0.128,0.034],[0.319,0.065],[0.409,0.124],[0.367,0.126],[0.441,0.292],[0.449,0.208],[0.625,0.078],[0.742,0.081],[0.863,0.099],[0.959,0.157],[0.999,0.264],[1.0,0.387],[0.969,0.507]],"apo":[[0.748,0.507],[0.777,0.499],[0.829,0.431],[0.878,0.319],[0.89,0.191],[0.838,0.076],[0.718,0.043],[0.559,0.001],[0.567,0.085],[0.492,0.275],[0.447,0.392],[0.428,0.441],[0.367,0.457],[0.487,0.485],[0.304,0.442],[0.188,0.416],[0.134,0.461],[0.114,0.358],[0.0,0.406],[0.122,0.248],[0.148,0.153],[0.106,0.189],[0.2,0.112],[0.131,0.035],[0.322,0.065],[0.409,0.124],[0.373,0.135],[0.459,0.293],[0.447,0.209],[0.622,0.078],[0.736,0.083],[0.862,0.1],[0.958,0.16],[1.0,0.267],[0.998,0.389],[0.966,0.503]]},"method":"X-ray","resolution":2.5,"rna_type":"Fluorescing aptamer","rna_group":"Aptamer","num_chains":1,"total_rna_len":108,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["hairpin loop"],"rmsd":0.29,"host_chain_rmsd":0.31,"pocket_rmsd":0.32,"lig_bsa":672.2,"ligand_burial":0.824,"tm_score":0.943,"rg_apo":15.26,"rg_holo":15.32,"rg_delta":0.06,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":0,"bp_conserved":21,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":6,"maxd":0.9,"water":0,"hbonds":1,"mw":764.0,"logp":4.01,"thumb_img":true,"thumb_v":1785389627,"apo_alts":[],"n_apo_copies":0},{"id":"8YAM_A1LYK_A_B_101_pocket","title":"8YAM (A1LYK) vs 3Q51 (apo)","struct_title":"Crystal structure of a class I PreQ1 riboswitch complexed with a synthetic compound","holo_pdb":"8YAM","ligand":"A1LYK","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"101","apo_pdb":"3Q51","apo_chain":"A","holo_len":32,"apo_len":32,"pocket_size":17,"thumb":{"holo":[[0.292,0.006],[0.262,0.073],[0.27,0.185],[0.337,0.29],[0.439,0.388],[0.522,0.526],[0.65,0.501],[0.763,0.426],[0.905,0.379],[0.853,0.276],[0.684,0.222],[0.658,0.002],[0.573,0.022],[0.665,0.176],[0.595,0.337],[0.468,0.407],[0.336,0.404],[0.228,0.333],[0.135,0.217],[0.092,0.131],[0.0,0.288],[0.169,0.249],[0.171,0.471],[0.246,0.587],[0.361,0.584],[0.487,0.576],[0.635,0.563],[0.706,0.496],[0.772,0.377],[0.839,0.258],[0.929,0.133],[1.0,0.163]],"apo":[[0.286,0.0],[0.257,0.073],[0.272,0.185],[0.345,0.285],[0.448,0.38],[0.529,0.521],[0.649,0.502],[0.764,0.43],[0.905,0.379],[0.845,0.281],[0.673,0.228],[0.693,0.057],[0.627,0.201],[0.632,0.144],[0.591,0.329],[0.465,0.404],[0.335,0.405],[0.231,0.335],[0.136,0.221],[0.096,0.13],[0.009,0.283],[0.174,0.248],[0.178,0.472],[0.252,0.585],[0.368,0.587],[0.493,0.575],[0.623,0.56],[0.704,0.487],[0.763,0.362],[0.823,0.252],[0.914,0.13],[0.983,0.157]]},"method":"X-ray","resolution":2.15,"rna_type":"Purine-compound riboswitch","rna_group":"Riboswitch","num_chains":1,"total_rna_len":30,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":91,"global_identity":91,"pocket_motifs":["internal loop","stem","single strand"],"rmsd":0.75,"host_chain_rmsd":0.75,"pocket_rmsd":1.01,"lig_bsa":381.0,"ligand_burial":0.772,"tm_score":0.736,"rg_apo":13.12,"rg_holo":13.31,"rg_delta":0.19,"bp_rewire_src":"dssr","bp_formed":1,"bp_broken":2,"bp_conserved":16,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":7,"maxd":3.3,"water":0,"hbonds":1,"mw":283.3,"logp":2.89,"thumb_img":true,"thumb_v":1785444693,"apo_alts":[],"n_apo_copies":0},{"id":"8YAN_A1LYL_A_B_101_pocket","title":"8YAN (A1LYL) vs 3Q51 (apo)","struct_title":"Crystal structure of a class I PreQ1 riboswitch complexed with a synthetic compound","holo_pdb":"8YAN","ligand":"A1LYL","holo_chain":"A","holo_rna_chain":"A","lig_auth_chain":"A","nearest_rna_chain":"A","lig_resseq":"101","apo_pdb":"3Q51","apo_chain":"A","holo_len":32,"apo_len":32,"pocket_size":16,"thumb":{"holo":[[0.288,0.004],[0.259,0.074],[0.269,0.186],[0.335,0.293],[0.439,0.384],[0.522,0.526],[0.651,0.509],[0.766,0.432],[0.906,0.381],[0.85,0.279],[0.683,0.226],[0.648,0.006],[0.585,0.072],[0.658,0.17],[0.595,0.337],[0.469,0.406],[0.335,0.408],[0.228,0.339],[0.132,0.217],[0.09,0.132],[0.0,0.29],[0.17,0.249],[0.173,0.472],[0.244,0.59],[0.36,0.587],[0.482,0.58],[0.632,0.564],[0.702,0.496],[0.765,0.375],[0.84,0.256],[0.923,0.133],[1.0,0.16]],"apo":[[0.284,0.0],[0.254,0.074],[0.269,0.187],[0.343,0.288],[0.446,0.382],[0.527,0.524],[0.648,0.504],[0.764,0.432],[0.904,0.381],[0.845,0.282],[0.672,0.229],[0.692,0.057],[0.626,0.202],[0.631,0.143],[0.59,0.33],[0.464,0.405],[0.333,0.407],[0.228,0.336],[0.133,0.222],[0.092,0.132],[0.006,0.286],[0.171,0.25],[0.176,0.475],[0.25,0.588],[0.367,0.589],[0.492,0.577],[0.623,0.562],[0.704,0.487],[0.762,0.362],[0.822,0.253],[0.914,0.13],[0.983,0.158]]},"method":"X-ray","resolution":2.25,"rna_type":"Purine-compound riboswitch","rna_group":"Riboswitch","num_chains":1,"total_rna_len":30,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":91,"global_identity":91,"pocket_motifs":["internal loop","stem","single strand"],"rmsd":0.71,"host_chain_rmsd":0.71,"pocket_rmsd":0.98,"lig_bsa":338.2,"ligand_burial":0.704,"tm_score":0.791,"rg_apo":13.12,"rg_holo":13.29,"rg_delta":0.17,"bp_rewire_src":"dssr","bp_formed":2,"bp_broken":2,"bp_conserved":16,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":7,"maxd":3.3,"water":0,"hbonds":0,"mw":269.3,"logp":2.96,"thumb_img":true,"thumb_v":1785444693,"apo_alts":[],"n_apo_copies":0},{"id":"9CPD_MQC_B_C_101_pocket","title":"9CPD (MQC) vs 9CPJ (apo)","struct_title":"Structures of small molecules bound to RNA repeat expansions that cause Huntington's disease-like 2 and myotonic dystrophy type 1","holo_pdb":"9CPD","ligand":"MQC","holo_chain":"B","holo_rna_chain":"B","lig_auth_chain":"B","nearest_rna_chain":"B","lig_resseq":"101","apo_pdb":"9CPJ","apo_chain":"A","holo_len":13,"apo_len":13,"pocket_size":11,"thumb":{"holo":[[0.031,0.0],[0.056,0.041],[0.079,0.145],[0.126,0.286],[0.206,0.418],[0.331,0.481],[0.472,0.553],[0.561,0.473],[0.649,0.377],[0.741,0.25],[0.814,0.151],[0.865,0.082],[0.935,0.1]],"apo":[[0.0,0.01],[0.003,0.055],[0.028,0.162],[0.085,0.295],[0.181,0.419],[0.307,0.481],[0.436,0.516],[0.56,0.469],[0.676,0.368],[0.78,0.253],[0.865,0.144],[0.943,0.082],[1.0,0.102]]},"method":"NMR","resolution":null,"rna_type":"Double helix","rna_group":"Structural","num_chains":2,"total_rna_len":26,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["internal loop","stem"],"rmsd":2.19,"host_chain_rmsd":1.8,"pocket_rmsd":2.34,"lig_bsa":358.8,"ligand_burial":0.688,"tm_score":0.384,"rg_apo":14.93,"rg_holo":13.76,"rg_delta":-1.17,"bp_rewire_src":"dssr","bp_formed":1,"bp_broken":1,"bp_conserved":12,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":12,"maxd":5.0,"water":0,"hbonds":1,"mw":306.4,"logp":3.58,"thumb_img":true,"thumb_v":1785389627,"apo_alts":[],"n_apo_copies":0},{"id":"9CPG_A1AZM_B_C_101_pocket","title":"9CPG (A1AZM) vs 9CPJ (apo)","struct_title":"Structures of small molecules bound to RNA repeat expansions that cause Huntington's disease-like 2 and myotonic dystrophy type 1","holo_pdb":"9CPG","ligand":"A1AZM","holo_chain":"B","holo_rna_chain":"B","lig_auth_chain":"B","nearest_rna_chain":"A","lig_resseq":"101","apo_pdb":"9CPJ","apo_chain":"A","holo_len":13,"apo_len":13,"pocket_size":11,"thumb":{"holo":[[0.9,0.61],[0.911,0.54],[0.924,0.416],[0.909,0.261],[0.821,0.131],[0.716,0.027],[0.574,0.0],[0.442,0.041],[0.312,0.133],[0.225,0.259],[0.17,0.397],[0.145,0.499],[0.136,0.53]],"apo":[[0.998,0.548],[1.0,0.509],[0.981,0.406],[0.928,0.272],[0.833,0.145],[0.706,0.076],[0.573,0.034],[0.445,0.075],[0.323,0.173],[0.216,0.288],[0.129,0.4],[0.053,0.466],[0.0,0.451]]},"method":"NMR","resolution":null,"rna_type":"A-form double helix","rna_group":"Structural","num_chains":2,"total_rna_len":26,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["internal loop","stem"],"rmsd":3.47,"host_chain_rmsd":2.76,"pocket_rmsd":2.31,"lig_bsa":285.7,"ligand_burial":0.539,"tm_score":0.346,"rg_apo":14.93,"rg_holo":13.81,"rg_delta":-1.12,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":1,"bp_conserved":12,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":12,"maxd":6.8,"water":0,"hbonds":3,"mw":312.3,"logp":1.52,"thumb_img":true,"thumb_v":1785488734,"apo_alts":[],"n_apo_copies":0},{"id":"9CPI_A1AZL_B_C_101_pocket","title":"9CPI (A1AZL) vs 9CPJ (apo)","struct_title":"Structures of small molecules bound to RNA repeat expansions that cause Huntington's disease-like 2 and myotonic dystrophy type 1","holo_pdb":"9CPI","ligand":"A1AZL","holo_chain":"B","holo_rna_chain":"B","lig_auth_chain":"B","nearest_rna_chain":"A","lig_resseq":"101","apo_pdb":"9CPJ","apo_chain":"A","holo_len":13,"apo_len":13,"pocket_size":10,"thumb":{"holo":[[0.049,0.574],[0.058,0.511],[0.073,0.398],[0.099,0.248],[0.165,0.111],[0.268,0.042],[0.455,0.0],[0.619,0.037],[0.723,0.092],[0.791,0.224],[0.833,0.375],[0.858,0.488],[0.882,0.538]],"apo":[[0.001,0.514],[0.0,0.48],[0.022,0.381],[0.078,0.251],[0.177,0.127],[0.305,0.06],[0.438,0.018],[0.565,0.06],[0.683,0.159],[0.787,0.277],[0.871,0.392],[0.946,0.464],[1.0,0.455]]},"method":"NMR","resolution":null,"rna_type":"A-form double helix","rna_group":"Structural","num_chains":2,"total_rna_len":26,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["internal loop","stem"],"rmsd":3.78,"host_chain_rmsd":2.88,"pocket_rmsd":4.18,"lig_bsa":360.3,"ligand_burial":0.581,"tm_score":0.359,"rg_apo":14.93,"rg_holo":14.14,"rg_delta":-0.79,"bp_rewire_src":"dssr","bp_formed":0,"bp_broken":0,"bp_conserved":13,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":12,"maxd":6.7,"water":0,"hbonds":4,"mw":376.5,"logp":1.31,"thumb_img":true,"thumb_v":1785488734,"apo_alts":[],"n_apo_copies":0},{"id":"9DLL_A1AZM_B_C_101_pocket","title":"9DLL (A1AZM) vs 9DKG (apo)","struct_title":"NMR structures of small molecules bound to a model of an RNA CAG repeat expansion.","holo_pdb":"9DLL","ligand":"A1AZM","holo_chain":"B","holo_rna_chain":"B","lig_auth_chain":"B","nearest_rna_chain":"A","lig_resseq":"101","apo_pdb":"9DKG","apo_chain":"A","holo_len":13,"apo_len":13,"pocket_size":10,"thumb":{"holo":[[0.98,0.746],[0.975,0.67],[0.969,0.532],[0.947,0.357],[0.879,0.192],[0.725,0.083],[0.536,0.0],[0.394,0.104],[0.251,0.209],[0.151,0.355],[0.078,0.511],[0.038,0.632],[0.007,0.669]],"apo":[[1.0,0.708],[0.975,0.637],[0.955,0.521],[0.911,0.366],[0.828,0.206],[0.691,0.103],[0.544,0.074],[0.409,0.126],[0.288,0.238],[0.182,0.385],[0.099,0.523],[0.049,0.592],[0.0,0.58]]},"method":"NMR","resolution":null,"rna_type":"A-form double helix","rna_group":"Structural","num_chains":2,"total_rna_len":26,"has_protein":false,"has_dna":false,"apo_has_protein":false,"apo_has_dna":false,"apo_n_prot":0,"apo_n_dna":0,"n_prot_chains":0,"n_dna_chains":0,"identity":100,"global_identity":100,"pocket_motifs":["internal loop","stem"],"rmsd":1.97,"host_chain_rmsd":1.72,"pocket_rmsd":1.95,"lig_bsa":390.2,"ligand_burial":0.727,"tm_score":0.368,"rg_apo":13.86,"rg_holo":14.52,"rg_delta":0.66,"bp_rewire_src":"dssr","bp_formed":1,"bp_broken":0,"bp_conserved":13,"bp_formed_wc":0,"bp_broken_wc":0,"bp_conserved_wc":12,"maxd":3.9,"water":0,"hbonds":1,"mw":312.3,"logp":1.52,"thumb_img":true,"thumb_v":1785488734,"apo_alts":[],"n_apo_copies":0}]}